Wall clock time and date at job start Tue Mar 31 2020 23:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47351 * 2 1 4 4 C 1.42901 * 114.00457 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.30144 * 27.81859 * 4 3 2 6 6 C 1.54386 * 110.42761 * 265.59165 * 4 3 2 7 7 N 1.48148 * 104.61688 * 264.94273 * 6 4 3 8 8 C 1.34774 * 127.84094 * 140.43452 * 7 6 4 9 9 O 1.21281 * 120.00349 * 180.02562 * 8 7 6 10 10 C 1.50707 * 119.99519 * 0.03307 * 8 7 6 11 11 H 1.08999 * 110.21677 * 320.46740 * 10 8 7 12 12 C 1.54468 * 110.24709 * 82.49732 * 10 8 7 13 13 C 1.54631 * 101.76594 * 144.41471 * 12 10 8 14 14 C 1.51283 * 104.19388 * 335.19834 * 13 12 10 15 15 O 1.21276 * 124.93898 * 196.22842 * 14 13 12 16 16 N 1.34415 * 110.11261 * 16.25522 * 14 13 12 17 17 C 1.46503 * 124.34792 * 180.42974 * 16 14 13 18 18 C 1.48146 * 104.32188 * 320.41987 * 7 6 4 19 19 C 1.54284 * 110.34630 * 149.99604 * 4 3 2 20 20 H 1.09000 * 110.34238 * 0.02562 * 19 4 3 21 21 C 1.52996 * 110.34095 * 237.84557 * 19 4 3 22 22 N 1.46504 * 109.46681 * 174.99921 * 21 19 4 23 23 C 1.36943 * 119.99781 * 180.02562 * 22 21 19 24 24 H 1.08002 * 119.99788 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99622 * 180.27904 * 23 22 21 26 26 N 1.31622 * 119.99400 * 179.72313 * 25 23 22 27 27 Si 1.86800 * 120.00144 * 359.72086 * 25 23 22 28 28 H 1.48506 * 109.46719 * 90.00417 * 27 25 23 29 29 H 1.48501 * 109.46793 * 210.00071 * 27 25 23 30 30 H 1.48489 * 109.47333 * 330.00315 * 27 25 23 31 31 H 1.09003 * 109.46939 * 300.00139 * 1 2 3 32 32 H 1.08994 * 109.46906 * 59.99970 * 1 2 3 33 33 H 1.08996 * 109.47181 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46939 * 239.99861 * 2 1 3 35 35 H 1.09001 * 109.47222 * 119.99793 * 2 1 3 36 36 H 1.08993 * 110.41363 * 23.73010 * 6 4 3 37 37 H 1.09007 * 110.40418 * 146.16221 * 6 4 3 38 38 H 1.09003 * 110.96776 * 262.52799 * 12 10 8 39 39 H 1.08998 * 110.97473 * 26.29280 * 12 10 8 40 40 H 1.09000 * 110.48568 * 216.52296 * 13 12 10 41 41 H 1.09005 * 110.48745 * 93.87998 * 13 12 10 42 42 H 1.09006 * 109.47196 * 269.97443 * 17 16 14 43 43 H 1.09000 * 109.46815 * 29.96980 * 17 16 14 44 44 H 1.09002 * 109.47621 * 149.97287 * 17 16 14 45 45 H 1.09002 * 110.40557 * 280.79435 * 18 7 6 46 46 H 1.09001 * 110.40948 * 158.36653 * 18 7 6 47 47 H 1.09006 * 109.47179 * 55.00537 * 21 19 4 48 48 H 1.08997 * 109.47540 * 295.00000 * 21 19 4 49 49 H 0.97000 * 120.00410 * 0.02562 * 22 21 19 50 50 H 0.97009 * 119.99492 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8792 0.5887 -0.4780 6 6 3.9599 1.6133 1.4417 7 7 4.0938 3.0757 1.6374 8 6 3.8028 3.7922 2.7412 9 8 3.9678 4.9938 2.7453 10 6 3.2726 3.1002 3.9706 11 1 2.5678 2.3182 3.6881 12 6 4.4366 2.5026 4.7916 13 6 3.9375 2.7065 6.2408 14 6 2.9754 3.8698 6.1417 15 8 2.5785 4.5249 7.0819 16 7 2.6242 4.0711 4.8599 17 6 1.7118 5.1247 4.4086 18 6 4.6205 3.5718 0.3447 19 6 3.8664 2.7514 -0.7240 20 1 2.9937 3.2999 -1.0785 21 6 4.7959 2.4186 -1.8928 22 7 5.1016 3.6428 -2.6373 23 6 5.9208 3.5909 -3.7335 24 1 6.3417 2.6476 -4.0488 25 6 6.2151 4.7517 -4.4354 26 7 7.0068 4.7026 -5.4858 27 14 5.4876 6.3833 -3.8895 28 1 6.4041 7.0339 -2.9189 29 1 5.3097 7.2658 -5.0705 30 1 4.1708 6.1472 -3.2451 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2472 1.1982 2.1542 37 1 4.9294 1.1258 1.5447 38 1 4.5671 1.4435 4.5694 39 1 5.3608 3.0532 4.6161 40 1 4.7697 2.9549 6.8995 41 1 3.4219 1.8142 6.5959 42 1 0.6893 4.7469 4.4140 43 1 1.7861 5.9812 5.0786 44 1 1.9809 5.4300 3.3974 45 1 5.6931 3.3902 0.2764 46 1 4.4059 4.6343 0.2294 47 1 4.3063 1.7038 -2.5542 48 1 5.7201 1.9856 -1.5102 49 1 4.7239 4.4900 -2.3538 50 1 7.2122 5.5138 -5.9766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691763721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:28 Heat of formation + Delta-G solvation = -83.104226 kcal Electronic energy + Delta-G solvation = -30882.903478 eV Core-core repulsion = 26718.223117 eV Total energy + Delta-G solvation = -4164.680361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27588 -39.99036 -38.59396 -36.87310 -36.31837 -34.95320 -33.18394 -32.35051 -31.49425 -30.35106 -28.79957 -28.45288 -26.89398 -25.64834 -24.02729 -23.02248 -22.66536 -21.76004 -20.47555 -20.12647 -19.31549 -18.11037 -17.61229 -17.14347 -16.91559 -16.29071 -16.21513 -15.90057 -15.41461 -14.89175 -14.83773 -14.45572 -14.34159 -14.19377 -14.01439 -13.74331 -13.59263 -13.21242 -12.98760 -12.90609 -12.83459 -12.65276 -12.56096 -12.33919 -12.20068 -12.07975 -11.99297 -11.77227 -11.58395 -11.44117 -11.25809 -10.92151 -10.84690 -10.65468 -10.27395 -10.17011 -10.05780 -9.86252 -9.63834 -9.01193 -8.97418 -8.82042 -7.31527 -5.82188 -3.19041 2.18404 2.26671 2.51260 2.86875 3.36423 3.38615 3.40053 3.44984 3.83680 3.90883 4.07824 4.29645 4.42249 4.50200 4.55220 4.56598 4.77589 4.83020 4.89645 4.95981 5.09204 5.11489 5.12925 5.15842 5.17565 5.23046 5.34418 5.36719 5.42600 5.44070 5.47014 5.53714 5.55990 5.64322 5.66635 5.69893 5.87249 5.93228 5.97998 6.07622 6.11222 6.46222 6.53186 6.75850 7.06434 7.28969 7.80165 7.91214 7.91880 8.36243 9.14190 9.86745 10.05009 11.35840 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.003222 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.339138 B = 8687.029991 C =10224.298837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.374 6.374 4 C 0.082 3.918 5 H 0.087 0.913 6 C 0.078 3.922 7 N -0.613 5.613 8 C 0.528 3.472 9 O -0.526 6.526 10 C 0.117 3.883 11 H 0.104 0.896 12 C -0.120 4.120 13 C -0.152 4.152 14 C 0.519 3.481 15 O -0.530 6.530 16 N -0.600 5.600 17 C 0.092 3.908 18 C 0.113 3.887 19 C -0.110 4.110 20 H 0.096 0.904 21 C 0.169 3.831 22 N -0.755 5.755 23 C -0.248 4.248 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.882 3.118 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.032 0.968 48 H 0.032 0.968 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -13.408 20.443 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.293 6.293 4 C 0.023 3.977 5 H 0.105 0.895 6 C -0.046 4.046 7 N -0.347 5.347 8 C 0.315 3.685 9 O -0.402 6.402 10 C 0.009 3.991 11 H 0.121 0.879 12 C -0.158 4.158 13 C -0.193 4.193 14 C 0.307 3.693 15 O -0.406 6.406 16 N -0.334 5.334 17 C -0.049 4.049 18 C -0.009 4.009 19 C -0.130 4.130 20 H 0.114 0.886 21 C 0.042 3.958 22 N -0.401 5.401 23 C -0.378 4.378 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.209 1.209 29 H -0.216 1.216 30 H -0.203 1.203 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.457 -12.189 20.837 26.308 hybrid contribution -0.344 0.931 -0.008 0.993 sum -10.800 -11.258 20.828 26.023 Atomic orbital electron populations 1.21738 0.93837 1.02132 1.03178 1.22550 0.95619 0.83995 1.00121 1.88021 1.20281 1.26235 1.94739 1.23041 0.81630 0.99175 0.93882 0.89485 1.23047 1.01717 0.81646 0.98193 1.48928 1.64207 1.08521 1.13051 1.20148 0.78207 0.87132 0.83040 1.90749 1.52912 1.13976 1.82513 1.21599 0.96221 0.91528 0.89735 0.87857 1.22603 0.97215 1.02779 0.93229 1.22363 1.00171 0.98658 0.98062 1.20836 0.81318 0.85045 0.82144 1.90732 1.57979 1.51820 1.40113 1.47861 1.46154 1.32384 1.06955 1.21706 0.91334 0.89641 1.02237 1.22524 0.98427 1.00100 0.79817 1.22506 0.99963 0.94917 0.95617 0.88619 1.20663 0.94805 0.90366 0.89992 1.42693 1.59303 1.04432 1.33636 1.19007 1.20412 0.96046 1.02301 0.89142 1.24663 0.99372 0.97393 0.97413 1.69702 1.39934 1.27840 1.20495 0.86591 0.79159 0.85156 0.77899 1.20891 1.21618 1.20269 0.92083 0.91692 0.91191 0.92933 0.93545 0.89805 0.89442 0.88077 0.89158 0.87442 0.87309 0.92756 0.90550 0.89631 0.89664 0.89622 0.94978 0.95022 0.80525 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.42 6.50 37.16 0.24 0.66 16 3 O -0.37 -4.05 9.95 -35.23 -0.35 -4.40 16 4 C 0.08 0.82 3.19 -25.33 -0.08 0.74 16 5 H 0.09 0.75 7.38 -51.93 -0.38 0.37 16 6 C 0.08 0.61 6.66 -2.41 -0.02 0.60 16 7 N -0.61 -6.94 3.32 -169.30 -0.56 -7.51 16 8 C 0.53 6.52 6.61 -10.98 -0.07 6.44 16 9 O -0.53 -8.68 14.86 5.56 0.08 -8.60 16 10 C 0.12 1.04 3.13 -68.16 -0.21 0.83 16 11 H 0.10 0.70 6.99 -51.93 -0.36 0.34 16 12 C -0.12 -0.74 6.67 -25.10 -0.17 -0.90 16 13 C -0.15 -1.03 6.86 -26.74 -0.18 -1.22 16 14 C 0.52 6.05 8.02 -10.86 -0.09 5.97 16 15 O -0.53 -8.24 17.59 5.56 0.10 -8.14 16 16 N -0.60 -6.73 3.00 -174.02 -0.52 -7.26 16 17 C 0.09 1.05 10.43 59.85 0.62 1.68 16 18 C 0.11 1.56 6.41 -2.41 -0.02 1.54 16 19 C -0.11 -1.51 2.91 -89.22 -0.26 -1.77 16 20 H 0.10 1.49 7.98 -51.93 -0.41 1.08 16 21 C 0.17 2.88 5.38 -4.04 -0.02 2.86 16 22 N -0.75 -16.96 5.28 -59.91 -0.32 -17.28 16 23 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 26 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 27 Si 0.88 22.01 27.73 -169.99 -4.71 17.29 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.49 6.68 -51.93 -0.35 0.14 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 44 H 0.09 1.09 5.98 -51.93 -0.31 0.78 16 45 H 0.09 1.18 7.75 -51.93 -0.40 0.78 16 46 H 0.09 1.37 7.88 -51.93 -0.41 0.96 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 49 H 0.36 8.11 5.47 -40.82 -0.22 7.89 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -36.70 401.30 -7.92 -44.61 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.33 Total: 3.41 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.12 Total: 9.92 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.63 Total: -60.13 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.17 Total: -21.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.70 -7.92 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691763721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.494 kcal (2) G-P(sol) polarization free energy of solvation -36.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds