Wall clock time and date at job start Tue Mar 31 2020 23:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42891 * 109.47312 * 2 1 4 4 C 1.42899 * 114.00242 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.50701 * 115.54689 * 294.87975 * 5 4 3 7 7 O 1.21276 * 120.00153 * 124.22606 * 6 5 4 8 8 N 1.34776 * 120.00153 * 304.22268 * 6 5 4 9 9 C 1.46498 * 120.00473 * 175.03445 * 8 6 5 10 10 H 1.09004 * 112.84495 * 23.80684 * 9 8 6 11 11 C 1.53780 * 113.61684 * 154.99872 * 9 8 6 12 12 C 1.53778 * 87.07783 * 140.06837 * 11 9 8 13 13 H 1.08999 * 113.61158 * 89.20493 * 12 11 9 14 14 N 1.46904 * 113.61100 * 220.02051 * 12 11 9 15 15 C 1.46902 * 110.99854 * 205.00193 * 14 12 11 16 16 C 1.50697 * 109.47622 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99502 * 0.02562 * 16 15 14 18 18 N 1.34766 * 120.00710 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00360 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00100 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99987 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99872 * 179.72560 * 21 19 18 24 24 H 1.48505 * 109.46993 * 270.27344 * 23 21 19 25 25 H 1.48494 * 109.47196 * 30.27590 * 23 21 19 26 26 H 1.48500 * 109.47015 * 150.27584 * 23 21 19 27 27 C 1.53774 * 113.69267 * 252.54040 * 9 8 6 28 28 C 1.53000 * 117.50026 * 80.54520 * 5 4 3 29 29 C 1.52996 * 117.50225 * 149.20834 * 5 4 3 30 30 H 1.08998 * 109.47566 * 59.99968 * 1 2 3 31 31 H 1.09003 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47064 * 299.99596 * 1 2 3 33 33 H 1.09003 * 109.46451 * 239.99958 * 2 1 3 34 34 H 1.09001 * 109.47207 * 120.00899 * 2 1 3 35 35 H 1.08994 * 109.47349 * 59.99868 * 4 3 2 36 36 H 1.09003 * 109.47043 * 300.00428 * 4 3 2 37 37 H 0.97008 * 119.99960 * 355.03933 * 8 6 5 38 38 H 1.09004 * 113.61296 * 25.52330 * 11 9 8 39 39 H 1.09000 * 113.61840 * 254.61985 * 11 9 8 40 40 H 1.00898 * 111.00175 * 328.95061 * 14 12 11 41 41 H 1.09000 * 109.47224 * 59.99858 * 15 14 12 42 42 H 1.09004 * 109.47432 * 300.00293 * 15 14 12 43 43 H 0.97001 * 119.99768 * 0.02562 * 18 16 15 44 44 H 0.97001 * 119.99675 * 359.72908 * 22 21 19 45 45 H 1.09001 * 113.61809 * 105.45677 * 27 9 8 46 46 H 1.08999 * 113.61430 * 334.54855 * 27 9 8 47 47 H 1.09000 * 117.49921 * 215.00413 * 28 5 4 48 48 H 1.08998 * 117.49818 * 0.03077 * 28 5 4 49 49 H 1.09006 * 117.49585 * 359.97403 * 29 5 4 50 50 H 1.08994 * 117.50448 * 144.99442 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 3.4398 3.7144 -1.2327 7 8 2.7648 4.7169 -1.1317 8 7 3.8451 3.2946 -2.4476 9 6 3.3813 3.9850 -3.6536 10 1 3.0791 5.0146 -3.4621 11 6 4.3317 3.8349 -4.8533 12 6 3.0762 3.6854 -5.7286 13 1 2.6914 4.6330 -6.1056 14 7 3.2083 2.6655 -6.7776 15 6 2.3054 2.9465 -7.9018 16 6 2.4691 1.8821 -8.9559 17 8 3.2599 0.9780 -8.7871 18 7 1.7363 1.9341 -10.0858 19 6 1.8849 0.9654 -11.0445 20 1 2.5896 0.1609 -10.8946 21 6 1.1297 1.0194 -12.2096 22 7 0.2726 1.9987 -12.3923 23 14 1.3378 -0.2963 -13.5193 24 1 2.3963 0.1191 -14.4744 25 1 1.7259 -1.5774 -12.8766 26 1 0.0564 -0.4763 -14.2480 27 6 2.3531 3.1825 -4.4681 28 6 3.7929 3.6775 1.3393 29 6 5.1343 3.3198 0.6944 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.8333 0.9766 -0.8907 36 1 3.8340 0.9763 0.8891 37 1 4.4440 2.5352 -2.5235 38 1 4.9461 2.9354 -4.8138 39 1 4.9092 4.7341 -5.0680 40 1 4.1644 2.5914 -7.0916 41 1 2.5481 3.9199 -8.3282 42 1 1.2746 2.9519 -7.5474 43 1 1.1037 2.6570 -10.2206 44 1 0.1643 2.6817 -11.7121 45 1 1.3332 3.5550 -4.3719 46 1 2.4266 2.1047 -4.3234 47 1 3.4926 4.7253 1.3286 48 1 3.4908 3.1106 2.2199 49 1 5.7141 2.5177 1.1512 50 1 5.7165 4.1321 0.2596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731479801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:31 Heat of formation + Delta-G solvation = -100.765586 kcal Electronic energy + Delta-G solvation = -28999.606614 eV Core-core repulsion = 24834.160399 eV Total energy + Delta-G solvation = -4165.446215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49900 -40.47427 -39.83295 -38.86200 -37.24273 -36.50206 -35.55306 -33.68852 -33.06098 -32.23977 -28.58460 -28.00708 -26.74268 -26.16523 -25.09572 -23.80547 -23.32255 -22.89547 -21.59170 -21.17941 -20.24498 -19.97872 -18.37255 -18.20139 -17.63893 -17.38567 -16.99723 -16.85759 -16.61126 -16.46886 -16.16324 -15.79755 -15.55253 -15.44077 -15.15792 -14.70846 -14.47101 -14.34102 -14.27319 -13.49928 -13.44394 -13.39330 -13.31232 -13.20798 -13.08360 -12.77724 -12.51297 -12.48054 -12.26885 -12.18380 -12.04572 -11.94280 -11.89251 -11.64171 -11.59515 -11.52661 -11.23926 -10.85779 -10.53794 -10.41201 -10.12001 -10.06128 -9.40779 -8.93694 -6.07749 1.48274 1.51566 1.54601 1.82048 1.99546 2.08666 2.34604 2.40641 2.83832 3.01573 3.15813 3.37614 3.47858 3.57116 3.60357 3.71496 3.82871 3.88905 3.96244 4.03930 4.11208 4.13461 4.26542 4.32384 4.43299 4.44992 4.47170 4.49791 4.54106 4.69546 4.74228 4.78281 4.78742 4.84068 4.93938 4.96657 4.99076 5.01851 5.11447 5.16886 5.21922 5.52173 5.60001 5.93620 6.01631 6.23835 6.34839 6.51847 6.56879 6.73220 7.20045 7.43159 7.90673 8.53942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.001876 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.418883 B =14923.248770 C =15927.930735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.413 6.413 4 C 0.103 3.897 5 C -0.182 4.182 6 C 0.553 3.447 7 O -0.584 6.584 8 N -0.701 5.701 9 C 0.127 3.873 10 H 0.104 0.896 11 C -0.129 4.129 12 C 0.060 3.940 13 H 0.087 0.913 14 N -0.665 5.665 15 C 0.064 3.936 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.587 5.587 19 C -0.409 4.409 20 H 0.074 0.926 21 C -0.044 4.044 22 N -0.917 5.917 23 Si 1.137 2.863 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.273 1.273 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.118 4.118 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.349 0.651 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.384 0.616 44 H 0.259 0.741 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.137 0.863 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 1.931 28.299 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.333 6.333 4 C 0.027 3.973 5 C -0.185 4.185 6 C 0.341 3.659 7 O -0.464 6.464 8 N -0.351 5.351 9 C 0.021 3.979 10 H 0.122 0.878 11 C -0.167 4.167 12 C -0.051 4.051 13 H 0.105 0.895 14 N -0.298 5.298 15 C -0.069 4.069 16 C 0.230 3.770 17 O -0.502 6.502 18 N -0.227 5.227 19 C -0.538 4.538 20 H 0.092 0.908 21 C -0.242 4.242 22 N -0.557 5.557 23 Si 0.956 3.044 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.198 1.198 27 C -0.177 4.177 28 C -0.183 4.183 29 C -0.155 4.155 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.169 0.831 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.218 0.782 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.137 0.863 49 H 0.156 0.844 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.004 1.249 27.262 28.440 hybrid contribution 0.512 1.203 0.702 1.484 sum 8.516 2.452 27.964 29.335 Atomic orbital electron populations 1.21770 0.93852 1.03177 1.02201 1.22605 0.95769 0.82771 1.01114 1.87946 1.21782 1.27965 1.95622 1.21985 0.81355 0.91447 1.02496 1.21427 1.07761 0.96134 0.93201 1.19885 0.77905 0.83459 0.84643 1.90657 1.40529 1.28022 1.87207 1.45773 1.49808 1.34809 1.04729 1.22212 0.95937 0.97077 0.82636 0.87834 1.23512 0.96148 1.04094 0.92985 1.22908 0.98360 0.93449 0.90344 0.89517 1.60174 1.11160 1.47697 1.10766 1.21608 0.99785 0.95114 0.90389 1.20857 0.83404 0.88998 0.83746 1.90492 1.40655 1.39253 1.79820 1.42016 1.37829 1.25635 1.17179 1.20548 1.25783 1.07245 1.00272 0.90810 1.27866 0.92598 1.03147 1.00622 1.70946 1.34997 1.12994 1.36723 0.82584 0.77189 0.71988 0.72604 1.19479 1.20224 1.19836 1.23531 0.98439 1.00883 0.94815 1.23015 1.00535 1.00978 0.93790 1.23244 0.88696 1.03969 0.99607 0.93585 0.89178 0.92150 0.92979 0.91401 0.91610 0.89687 0.75013 0.87994 0.88977 0.83129 0.91222 0.88320 0.78165 0.92991 0.92294 0.89933 0.89544 0.86329 0.84450 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -8.33 10.27 -148.98 -1.53 -9.86 16 4 C 0.10 1.40 5.74 71.98 0.41 1.82 16 5 C -0.18 -2.89 2.18 -52.93 -0.12 -3.01 16 6 C 0.55 12.68 7.09 87.66 0.62 13.30 16 7 O -0.58 -18.69 16.06 -3.02 -0.05 -18.73 16 8 N -0.70 -12.93 5.33 -440.06 -2.34 -15.28 16 9 C 0.13 2.57 4.27 45.52 0.19 2.76 16 10 H 0.10 2.38 7.42 -2.38 -0.02 2.37 16 11 C -0.13 -2.21 7.40 31.12 0.23 -1.98 16 12 C 0.06 1.34 4.14 45.44 0.19 1.53 16 13 H 0.09 1.80 7.87 -2.39 -0.02 1.78 16 14 N -0.67 -20.03 6.18 -492.85 -3.05 -23.08 16 15 C 0.06 2.15 6.01 85.56 0.51 2.66 16 16 C 0.44 20.97 7.82 87.66 0.69 21.66 16 17 O -0.62 -34.08 15.78 -3.09 -0.05 -34.13 16 18 N -0.59 -30.03 5.28 -307.00 -1.62 -31.66 16 19 C -0.41 -23.50 9.68 84.04 0.81 -22.69 16 20 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 21 C -0.04 -2.42 5.50 84.93 0.47 -1.95 16 22 N -0.92 -51.51 13.68 21.66 0.30 -51.22 16 23 Si 1.14 48.68 29.92 68.60 2.05 50.74 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C -0.14 -3.22 7.68 31.12 0.24 -2.98 16 28 C -0.15 -2.11 9.76 30.62 0.30 -1.81 16 29 C -0.12 -1.08 9.93 30.62 0.30 -0.78 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.74 7.91 -2.39 -0.02 0.72 16 36 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 37 H 0.41 5.49 8.50 -92.70 -0.79 4.70 16 38 H 0.10 1.65 8.12 -2.38 -0.02 1.63 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.35 10.72 8.24 -89.70 -0.74 9.98 16 41 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 42 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.38 18.08 6.73 -92.71 -0.62 17.45 16 44 H 0.26 14.09 6.78 -92.71 -0.63 13.46 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.09 1.62 7.83 -2.39 -0.02 1.60 16 48 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.49 418.45 -1.26 -80.76 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -1.04 Total: 44.26 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.07 Total: 8.21 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.72 Total: -121.23 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -1.63 Total: -62.73 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.74 kcal Total: -79.49 -1.26 -80.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731479801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.009 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds