Wall clock time and date at job start Tue Mar 31 2020 23:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00646 * 2 1 4 4 N 1.34786 * 119.99917 * 179.97438 * 2 1 3 5 5 C 1.47021 * 125.64581 * 0.03212 * 4 2 1 6 6 C 1.54322 * 107.26896 * 181.01738 * 5 4 2 7 7 C 1.55149 * 102.94333 * 22.19327 * 6 5 4 8 8 C 1.52999 * 111.00774 * 206.42026 * 7 6 5 9 9 C 1.50701 * 111.00389 * 82.57159 * 7 6 5 10 10 O 1.21275 * 120.00063 * 359.97438 * 9 7 6 11 11 N 1.34784 * 120.00062 * 180.02562 * 9 7 6 12 12 C 1.46495 * 119.99953 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47165 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.67644 * 59.68015 * 13 12 11 15 15 C 1.53297 * 109.68550 * 180.23544 * 13 12 11 16 16 O 1.42961 * 109.22290 * 172.02483 * 15 13 12 17 17 C 1.42960 * 114.16711 * 297.41945 * 16 15 13 18 18 C 1.53295 * 109.22009 * 62.58469 * 17 16 15 19 19 N 1.47147 * 108.38732 * 307.69341 * 18 17 16 20 20 C 1.36936 * 120.98627 * 230.56093 * 19 18 17 21 21 H 1.07997 * 120.00421 * 149.00309 * 20 19 18 22 22 C 1.38811 * 119.99776 * 329.00891 * 20 19 18 23 23 N 1.31621 * 120.00026 * 348.74354 * 22 20 19 24 24 Si 1.86799 * 120.00077 * 168.75265 * 22 20 19 25 25 H 1.48503 * 109.47190 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47436 * 119.99505 * 24 22 20 27 27 H 1.48502 * 109.47104 * 239.99915 * 24 22 20 28 28 C 1.47426 * 125.64653 * 179.71693 * 4 2 1 29 29 H 1.09001 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46240 * 60.00425 * 1 2 3 31 31 H 1.09001 * 109.47096 * 300.01039 * 1 2 3 32 32 H 1.08994 * 109.88635 * 300.43750 * 5 4 2 33 33 H 1.09001 * 109.88012 * 61.44723 * 5 4 2 34 34 H 1.09001 * 110.71634 * 140.55594 * 6 5 4 35 35 H 1.09004 * 110.72230 * 263.82780 * 6 5 4 36 36 H 1.09003 * 109.46917 * 59.99841 * 8 7 6 37 37 H 1.08995 * 109.47831 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47396 * 300.00569 * 8 7 6 39 39 H 0.96999 * 119.99921 * 359.97438 * 11 9 7 40 40 H 1.08996 * 109.47006 * 299.99607 * 12 11 9 41 41 H 1.08997 * 109.47588 * 59.99486 * 12 11 9 42 42 H 1.08995 * 109.51450 * 291.95170 * 15 13 12 43 43 H 1.09007 * 109.50987 * 52.10175 * 15 13 12 44 44 H 1.09002 * 109.51547 * 302.65675 * 17 16 15 45 45 H 1.09001 * 109.55225 * 182.52846 * 17 16 15 46 46 H 1.09003 * 109.68124 * 187.97473 * 18 17 16 47 47 H 1.09000 * 109.71624 * 67.44086 * 18 17 16 48 48 H 0.97001 * 120.00040 * 179.97438 * 23 22 20 49 49 H 1.08996 * 110.36768 * 274.74869 * 28 4 2 50 50 H 1.08998 * 110.36863 * 37.07547 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.5746 -2.5067 0.0005 6 6 2.7280 -3.5316 0.0273 7 6 3.9081 -2.7116 0.6121 8 6 5.2518 -3.2737 0.1439 9 6 3.8397 -2.6643 2.1168 10 8 2.9379 -3.2268 2.7009 11 7 4.7802 -1.9959 2.8135 12 6 4.7141 -1.9504 4.2763 13 6 5.8913 -1.1349 4.8149 14 1 5.8496 -0.1219 4.4148 15 6 5.8301 -1.0891 6.3460 16 8 7.0266 -0.4882 6.8471 17 6 8.2190 -1.2154 6.5416 18 6 8.4025 -1.2676 5.0205 19 7 7.1575 -1.7720 4.4198 20 6 7.1766 -2.8043 3.5202 21 1 6.3399 -3.4845 3.4609 22 6 8.2715 -2.9763 2.6845 23 7 9.1860 -2.0339 2.5955 24 14 8.4470 -4.5453 1.6860 25 1 7.2945 -5.4399 1.9631 26 1 8.4778 -4.2107 0.2396 27 1 9.7084 -5.2329 2.0621 28 6 3.6480 -1.3124 -0.0053 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 0.5140 0.8899 32 1 0.9482 -2.6301 0.8839 33 1 0.9758 -2.6424 -0.9002 34 1 2.4824 -4.3714 0.6774 35 1 2.9603 -3.8773 -0.9800 36 1 5.3033 -3.2331 -0.9442 37 1 6.0617 -2.6802 0.5680 38 1 5.3477 -4.3082 0.4737 39 1 5.5013 -1.5456 2.3464 40 1 3.7780 -1.4840 4.5833 41 1 4.7625 -2.9640 4.6739 42 1 4.9682 -0.4996 6.6584 43 1 5.7401 -2.1025 6.7372 44 1 8.1377 -2.2292 6.9335 45 1 9.0761 -0.7174 6.9948 46 1 9.2268 -1.9364 4.7730 47 1 8.6144 -0.2679 4.6412 48 1 9.9513 -2.1543 2.0117 49 1 4.0294 -1.2685 -1.0254 50 1 4.1084 -0.5366 0.6065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754972732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:52 Heat of formation + Delta-G solvation = -105.908026 kcal Electronic energy + Delta-G solvation = -32295.383114 eV Core-core repulsion = 28129.713906 eV Total energy + Delta-G solvation = -4165.669208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84152 -40.51383 -39.91689 -38.19319 -36.92117 -35.33139 -34.45091 -33.17652 -32.14513 -30.87037 -30.59243 -29.00560 -27.36558 -27.00133 -25.25308 -24.42679 -23.77825 -22.84275 -21.44043 -20.43414 -20.33552 -18.74748 -18.17188 -17.82232 -17.59403 -17.32352 -16.92749 -16.50425 -16.26554 -16.14876 -16.08106 -15.56625 -15.48603 -15.23137 -14.94567 -14.65921 -14.38460 -14.25780 -13.95688 -13.90633 -13.63181 -13.40990 -13.32867 -13.28600 -13.11988 -12.99729 -12.82278 -12.72923 -12.52294 -12.24306 -12.15479 -12.06372 -11.99393 -11.86363 -11.76700 -11.32135 -11.03380 -10.86551 -10.59436 -10.54024 -9.87337 -9.72818 -8.63193 -7.85403 -5.36971 1.40427 1.47916 1.54018 1.54769 1.66148 1.97334 2.28834 2.46608 3.00348 3.22153 3.30958 3.41211 3.51576 3.67724 3.82256 3.97893 4.02562 4.18146 4.26823 4.28930 4.30694 4.43277 4.44890 4.47822 4.54556 4.59691 4.60452 4.63013 4.66729 4.68387 4.70883 4.78118 4.85113 4.95454 4.97269 5.01700 5.08207 5.16586 5.21042 5.26280 5.27922 5.54488 5.61649 5.70275 6.27573 6.36782 6.47069 6.66431 7.07173 7.10892 7.28834 7.76302 8.33733 9.19730 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.004433 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.416357 B = 6314.725026 C = 7671.006322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.514 3.486 3 O -0.603 6.603 4 N -0.619 5.619 5 C 0.102 3.898 6 C -0.104 4.104 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.522 3.478 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.144 3.856 13 C 0.125 3.875 14 H 0.028 0.972 15 C 0.059 3.941 16 O -0.399 6.399 17 C 0.046 3.954 18 C 0.150 3.850 19 N -0.604 5.604 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.029 4.029 23 N -0.928 5.928 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.303 1.303 28 C 0.119 3.881 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.114 0.886 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.003 0.997 48 H 0.249 0.751 49 H 0.097 0.903 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -2.622 -5.129 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.306 3.694 3 O -0.485 6.485 4 N -0.352 5.352 5 C -0.019 4.019 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.195 4.195 9 C 0.308 3.692 10 O -0.461 6.461 11 N -0.346 5.346 12 C 0.020 3.980 13 C 0.019 3.981 14 H 0.045 0.955 15 C -0.020 4.020 16 O -0.317 6.317 17 C -0.032 4.032 18 C 0.024 3.976 19 N -0.330 5.330 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.225 4.225 23 N -0.574 5.574 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.230 1.230 28 C -0.004 4.004 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.245 0.755 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.086 0.914 47 H 0.021 0.979 48 H 0.059 0.941 49 H 0.115 0.885 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.513 -2.226 -4.693 15.414 hybrid contribution 1.392 -0.615 -0.644 1.653 sum -13.120 -2.841 -5.336 14.446 Atomic orbital electron populations 1.21893 0.87536 1.06298 1.06095 1.21428 0.92261 0.81303 0.74431 1.90707 1.72140 1.32563 1.53069 1.48740 1.06972 1.07089 1.72436 1.22261 0.96555 0.79588 1.03532 1.22678 0.91195 0.97391 1.02918 1.21933 0.99385 0.97326 0.90755 1.21782 0.93353 1.01097 1.03305 1.20520 0.80907 0.77729 0.89994 1.90586 1.36144 1.47237 1.72086 1.46056 1.28083 1.53124 1.07355 1.21062 0.96809 0.99727 0.80418 1.21523 0.86856 0.94696 0.95042 0.95464 1.22962 0.87778 0.98613 0.92606 1.87805 1.15405 1.51441 1.77062 1.23224 0.87347 0.95857 0.96752 1.21230 0.89869 0.96769 0.89706 1.44308 1.00820 1.38573 1.49320 1.19308 1.03966 1.03144 1.10576 0.91207 1.25596 0.98959 0.99217 0.98750 1.70121 1.13198 1.33087 1.40963 0.85717 0.77189 0.81011 0.79570 1.19446 1.20231 1.23046 1.22260 0.81903 0.94652 1.01585 0.87994 0.87098 0.88343 0.91039 0.87361 0.89282 0.86773 0.88402 0.92922 0.92144 0.75459 0.90984 0.92724 0.86822 0.92955 0.93628 0.87814 0.91418 0.97853 0.94107 0.88485 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.21 71.23 0.73 -1.78 16 2 C 0.51 13.89 7.96 87.65 0.70 14.59 16 3 O -0.60 -22.42 17.35 -3.03 -0.05 -22.47 16 4 N -0.62 -15.33 3.31 -811.36 -2.68 -18.01 16 5 C 0.10 1.85 5.51 86.73 0.48 2.33 16 6 C -0.10 -2.07 5.61 31.78 0.18 -1.89 16 7 C -0.09 -2.45 0.81 -51.46 -0.04 -2.49 16 8 C -0.14 -3.81 8.39 71.98 0.60 -3.20 16 9 C 0.52 18.16 6.44 87.66 0.56 18.72 16 10 O -0.58 -22.20 15.58 -3.02 -0.05 -22.25 16 11 N -0.70 -26.06 3.63 -463.08 -1.68 -27.74 16 12 C 0.14 5.30 4.44 86.38 0.38 5.68 16 13 C 0.13 4.90 3.21 44.96 0.14 5.04 16 14 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 15 C 0.06 2.00 6.29 72.08 0.45 2.46 16 16 O -0.40 -14.98 10.74 -148.98 -1.60 -16.58 16 17 C 0.05 1.72 6.98 72.08 0.50 2.23 16 18 C 0.15 6.87 5.38 86.35 0.46 7.34 16 19 N -0.60 -27.69 3.03 -673.74 -2.04 -29.74 16 20 C -0.24 -11.58 7.08 84.03 0.59 -10.99 16 21 H 0.07 3.41 5.80 -2.91 -0.02 3.40 16 22 C -0.03 -1.44 5.05 84.86 0.43 -1.01 16 23 N -0.93 -49.99 11.15 21.65 0.24 -49.75 16 24 Si 0.94 40.84 29.04 68.60 1.99 42.83 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.12 3.27 5.84 86.93 0.51 3.78 16 29 H 0.10 1.08 6.60 -2.39 -0.02 1.06 16 30 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.40 8.02 -2.39 -0.02 1.38 16 33 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 34 H 0.09 1.97 7.41 -2.39 -0.02 1.95 16 35 H 0.11 1.58 8.04 -2.39 -0.02 1.56 16 36 H 0.10 2.06 8.07 -2.39 -0.02 2.04 16 37 H 0.05 1.77 7.02 -2.39 -0.02 1.75 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 16.53 6.57 -92.71 -0.61 15.92 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.15 7.55 -2.39 -0.02 2.13 16 42 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.07 3.43 6.33 -2.39 -0.02 3.42 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 49 H 0.10 2.30 7.99 -2.39 -0.02 2.28 16 50 H 0.05 1.80 7.91 -2.39 -0.02 1.78 16 Total: -1.00 -68.31 389.48 1.15 -67.16 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.33 Total: 35.75 kcal Atomic # 6 Polarization: 34.11 SS G_CDS: 6.69 Total: 40.80 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -6.16 Total: -125.23 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -1.70 Total: -61.30 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.99 Total: 42.83 kcal Total: -68.31 1.15 -67.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754972732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.746 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds