Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47107 * 111.05840 * 2 1 4 4 C 1.53104 * 109.27905 * 177.62654 * 3 2 1 5 5 O 1.43016 * 109.25493 * 56.85076 * 4 3 2 6 6 C 1.43013 * 113.74201 * 301.32706 * 5 4 3 7 7 H 1.09008 * 109.50640 * 298.73963 * 6 5 4 8 8 C 1.50699 * 109.54516 * 178.63172 * 6 5 4 9 9 O 1.21282 * 119.99761 * 355.19318 * 8 6 5 10 10 N 1.34776 * 120.00168 * 175.19543 * 8 6 5 11 11 C 1.46496 * 119.99841 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47192 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.26815 * 60.61442 * 12 11 10 14 14 C 1.54998 * 110.30512 * 182.79664 * 12 11 10 15 15 C 1.55454 * 101.02927 * 155.00934 * 14 12 11 16 16 C 1.53764 * 102.01667 * 326.41101 * 15 14 12 17 17 C 1.53263 * 114.73125 * 151.74097 * 16 15 14 18 18 N 1.47713 * 85.91975 * 92.61633 * 17 16 15 19 19 C 1.36930 * 134.44032 * 204.11551 * 18 17 16 20 20 H 1.08004 * 120.00275 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99985 * 0.05885 * 19 18 17 22 22 N 1.31620 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46807 * 60.00308 * 23 21 19 25 25 H 1.48504 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47331 * 300.00259 * 23 21 19 27 27 C 1.47712 * 91.12118 * 24.15447 * 18 17 16 28 28 O 1.42526 * 108.38352 * 20.94915 * 16 15 14 29 29 C 1.47018 * 111.00176 * 236.38733 * 2 1 3 30 30 H 1.09005 * 109.46633 * 183.61100 * 1 2 3 31 31 H 1.08992 * 109.47255 * 303.61332 * 1 2 3 32 32 H 1.08999 * 109.46978 * 63.61634 * 1 2 3 33 33 H 1.08997 * 109.49376 * 57.68557 * 3 2 1 34 34 H 1.08996 * 109.53153 * 297.58944 * 3 2 1 35 35 H 1.08995 * 109.50506 * 296.91474 * 4 3 2 36 36 H 1.09001 * 109.54090 * 176.80257 * 4 3 2 37 37 H 0.96994 * 119.99934 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.47364 * 299.99991 * 11 10 8 39 39 H 1.09001 * 109.47310 * 60.00252 * 11 10 8 40 40 H 1.09004 * 111.10881 * 272.95042 * 14 12 11 41 41 H 1.09004 * 111.11029 * 37.06945 * 14 12 11 42 42 H 1.09007 * 110.92228 * 208.22937 * 15 14 12 43 43 H 1.08997 * 110.95564 * 84.60462 * 15 14 12 44 44 H 1.08997 * 113.80558 * 206.86586 * 17 16 15 45 45 H 1.08996 * 113.79989 * 338.36787 * 17 16 15 46 46 H 0.96993 * 119.99773 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.80517 * 221.59723 * 27 18 17 48 48 H 1.09007 * 113.79684 * 90.09615 * 27 18 17 49 49 H 1.09002 * 109.50864 * 62.45469 * 29 2 1 50 50 H 1.09003 * 109.50425 * 302.37108 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3728 0.0000 4 6 3.5267 1.3257 0.0598 5 8 4.0183 0.5565 -1.0411 6 6 3.5250 -0.7854 -1.0718 7 1 3.8385 -1.3093 -0.1686 8 6 4.0733 -1.4966 -2.2819 9 8 4.7428 -0.8893 -3.0905 10 7 3.8196 -2.8075 -2.4657 11 6 4.3522 -3.4986 -3.6425 12 6 3.9208 -4.9663 -3.6107 13 1 2.8335 -5.0407 -3.6269 14 6 4.5325 -5.7328 -4.8110 15 6 4.5498 -7.1857 -4.2583 16 6 4.8149 -6.9556 -2.7613 17 6 4.2454 -8.0364 -1.8358 18 7 5.5677 -8.6843 -1.9528 19 6 6.0220 -9.9683 -1.8116 20 1 7.0696 -10.1892 -1.9539 21 6 5.1360 -10.9863 -1.4863 22 7 3.8591 -10.7173 -1.3141 23 14 5.7557 -12.7381 -1.2945 24 1 6.7721 -12.7878 -0.2129 25 1 4.6200 -13.6296 -0.9472 26 1 6.3678 -13.1891 -2.5700 27 6 6.2038 -7.3925 -2.2821 28 8 4.4482 -5.6162 -2.4405 29 6 1.9959 -0.7598 -1.1430 30 1 -0.3633 -1.0257 0.0647 31 1 -0.3633 0.5689 0.8558 32 1 -0.3633 0.4567 -0.9206 33 1 1.6157 1.9096 0.8684 34 1 1.6845 1.8838 -0.9104 35 1 3.8402 0.8634 0.9958 36 1 3.9252 2.3387 0.0028 37 1 3.2844 -3.2932 -1.8189 38 1 3.9671 -3.0267 -4.5464 39 1 5.4406 -3.4393 -3.6371 40 1 3.8953 -5.6555 -5.6920 41 1 5.5420 -5.3829 -5.0269 42 1 5.3542 -7.7650 -4.7116 43 1 3.5871 -7.6730 -4.4127 44 1 4.0176 -7.6800 -0.8312 45 1 3.4328 -8.6118 -2.2793 46 1 3.2402 -11.4285 -1.0864 47 1 6.9441 -7.4573 -3.0795 48 1 6.5614 -6.8436 -1.4109 49 1 1.6828 -0.2835 -2.0722 50 1 1.6128 -1.7797 -1.1098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053586310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = -52.970839 kcal Electronic energy + Delta-G solvation = -30163.141879 eV Core-core repulsion = 25999.768200 eV Total energy + Delta-G solvation = -4163.373679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.60549 -39.87822 -38.82746 -36.60035 -36.03819 -34.52479 -32.26542 -32.04369 -31.67291 -29.57707 -28.79094 -26.99151 -25.37492 -24.93659 -24.52368 -23.58178 -21.86954 -21.24499 -21.16384 -20.36620 -18.76423 -17.73569 -17.06454 -16.86162 -16.53370 -16.32832 -15.87591 -15.51553 -15.33038 -15.16163 -14.99697 -14.73848 -14.34180 -14.15788 -13.89910 -13.68049 -13.44023 -13.13640 -12.85302 -12.77991 -12.49613 -12.36390 -12.18192 -12.09831 -11.81123 -11.76241 -11.41932 -11.24400 -11.11720 -10.96187 -10.85361 -10.68526 -10.52443 -10.35583 -10.08066 -10.05581 -9.81832 -9.58136 -9.16797 -8.90919 -8.82172 -8.73794 -6.91786 -5.79770 -3.12077 2.42936 2.63492 3.31959 3.38157 3.42208 3.43443 3.71620 4.00665 4.35305 4.45625 4.48492 4.50969 4.64748 4.72332 4.78039 4.82031 4.89088 5.03589 5.07166 5.08149 5.12164 5.16501 5.27091 5.29475 5.31739 5.34692 5.44620 5.46993 5.50060 5.54464 5.66592 5.70064 5.90792 6.05718 6.27174 6.34584 6.38086 6.38286 6.42305 6.48925 6.59110 6.69586 6.71899 7.01469 7.20976 7.37849 7.49719 7.68853 7.94506 8.08778 9.01770 9.67537 10.56332 11.37606 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002174 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.046585 B =12877.299169 C =13541.339107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.356 6.356 6 C 0.078 3.922 7 H 0.096 0.904 8 C 0.521 3.479 9 O -0.523 6.523 10 N -0.717 5.717 11 C 0.126 3.874 12 C 0.067 3.933 13 H 0.075 0.925 14 C -0.148 4.148 15 C -0.112 4.112 16 C 0.056 3.944 17 C 0.165 3.835 18 N -0.605 5.605 19 C -0.221 4.221 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.118 3.882 28 O -0.365 6.365 29 C 0.029 3.971 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.076 0.924 46 H 0.255 0.745 47 H 0.045 0.955 48 H 0.040 0.960 49 H 0.050 0.950 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 22.465 -1.186 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.114 4.114 4 C -0.015 4.015 5 O -0.274 6.274 6 C 0.016 3.984 7 H 0.114 0.886 8 C 0.305 3.695 9 O -0.398 6.398 10 N -0.370 5.370 11 C 0.002 3.998 12 C 0.008 3.992 13 H 0.093 0.907 14 C -0.186 4.186 15 C -0.150 4.150 16 C 0.016 3.984 17 C 0.040 3.960 18 N -0.333 5.333 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C -0.009 4.009 28 O -0.283 6.283 29 C -0.100 4.100 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.242 0.758 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.626 22.508 -1.230 23.495 hybrid contribution -0.490 -1.012 -0.030 1.125 sum -7.117 21.496 -1.260 22.678 Atomic orbital electron populations 1.22405 0.86214 1.02927 1.00837 1.62228 1.08706 1.13671 1.41870 1.22882 0.96701 0.89815 1.02048 1.22761 0.92072 0.96666 0.90028 1.88121 1.69290 1.21714 1.48260 1.21935 0.92954 0.85724 0.97797 0.88624 1.19994 0.80791 0.82131 0.86617 1.90724 1.38129 1.66109 1.44813 1.45794 1.55055 1.09207 1.26945 1.21602 1.00059 0.90301 0.87820 1.23171 0.98061 0.90987 0.86960 0.90740 1.23267 1.01845 0.96014 0.97505 1.22611 1.03473 0.95280 0.93613 1.24304 0.97807 0.80981 0.95293 1.22502 0.90887 0.87482 0.95163 1.45650 1.04607 1.01167 1.81879 1.18925 0.93438 0.81205 1.41241 0.90178 1.24791 0.95621 0.98088 1.01904 1.69806 1.01670 1.31695 1.53630 0.86181 0.77425 0.84044 0.77998 1.21147 1.21537 1.21055 1.22817 0.93605 0.87297 0.97140 1.88350 1.82172 1.25910 1.31874 1.22691 0.94006 1.00399 0.92877 0.90695 0.90907 0.95327 0.89247 0.93647 0.91816 0.87771 0.75776 0.90418 0.90620 0.90131 0.90288 0.89722 0.90347 0.94987 0.90628 0.93547 0.93654 0.94237 0.93198 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.61 60.06 0.58 0.73 16 2 N -0.54 -4.35 4.99 -242.51 -1.21 -5.56 16 3 C 0.01 0.10 5.67 -3.66 -0.02 0.08 16 4 C 0.06 0.50 7.01 37.21 0.26 0.76 16 5 O -0.36 -4.34 10.01 -55.04 -0.55 -4.89 16 6 C 0.08 0.84 3.21 -27.83 -0.09 0.75 16 7 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 8 C 0.52 6.77 7.18 -10.99 -0.08 6.69 16 9 O -0.52 -8.93 16.51 -14.26 -0.24 -9.16 16 10 N -0.72 -8.07 5.44 -60.29 -0.33 -8.40 16 11 C 0.13 1.47 5.40 -4.04 -0.02 1.45 16 12 C 0.07 0.83 3.52 -25.67 -0.09 0.74 16 13 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.15 -1.79 6.58 -24.37 -0.16 -1.95 16 15 C -0.11 -1.79 6.32 -25.03 -0.16 -1.95 16 16 C 0.06 1.06 1.68 -90.05 -0.15 0.91 16 17 C 0.17 3.89 7.01 -3.25 -0.02 3.87 16 18 N -0.60 -15.48 3.67 -181.26 -0.67 -16.15 16 19 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 20 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -26.94 11.39 55.49 0.63 -26.31 16 23 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.12 2.48 8.37 -3.24 -0.03 2.45 16 28 O -0.36 -6.01 10.67 -35.23 -0.38 -6.38 16 29 C 0.03 0.25 4.90 -3.71 -0.02 0.24 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 3.97 8.28 -40.82 -0.34 3.63 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.08 1.42 7.83 -51.92 -0.41 1.01 16 43 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.93 7.05 -51.93 -0.37 1.56 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.05 0.89 7.98 -51.93 -0.41 0.48 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.69 8.01 -51.93 -0.42 0.28 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -34.30 399.70 -10.65 -44.95 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.66 Total: 0.82 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.26 Total: 8.15 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -1.57 Total: -56.42 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.16 Total: -20.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.30 -10.65 -44.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.018 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds