Wall clock time and date at job start Tue Mar 31 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47107 * 111.05840 * 2 1 4 4 C 1.53104 * 109.27905 * 177.62654 * 3 2 1 5 5 O 1.43016 * 109.25493 * 56.85076 * 4 3 2 6 6 C 1.43013 * 113.74201 * 301.32706 * 5 4 3 7 7 H 1.09008 * 109.50640 * 298.73963 * 6 5 4 8 8 C 1.50699 * 109.54516 * 178.63172 * 6 5 4 9 9 O 1.21282 * 119.99761 * 355.19318 * 8 6 5 10 10 N 1.34776 * 120.00168 * 175.19543 * 8 6 5 11 11 C 1.46496 * 119.99841 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47192 * 180.02562 * 11 10 8 13 13 H 1.08994 * 110.26815 * 60.61442 * 12 11 10 14 14 C 1.54998 * 110.30512 * 182.79664 * 12 11 10 15 15 C 1.55454 * 101.02927 * 155.00934 * 14 12 11 16 16 C 1.53764 * 102.01667 * 326.41101 * 15 14 12 17 17 C 1.53263 * 114.73125 * 151.74097 * 16 15 14 18 18 N 1.47713 * 85.91975 * 92.61633 * 17 16 15 19 19 C 1.36930 * 134.44032 * 204.11551 * 18 17 16 20 20 H 1.08004 * 120.00275 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99985 * 0.05885 * 19 18 17 22 22 N 1.31620 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46807 * 60.00308 * 23 21 19 25 25 H 1.48504 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47331 * 300.00259 * 23 21 19 27 27 C 1.47712 * 91.12118 * 24.15447 * 18 17 16 28 28 O 1.42526 * 108.38352 * 20.94915 * 16 15 14 29 29 C 1.47018 * 111.00176 * 236.38733 * 2 1 3 30 30 H 1.09005 * 109.46633 * 183.61100 * 1 2 3 31 31 H 1.08992 * 109.47255 * 303.61332 * 1 2 3 32 32 H 1.08999 * 109.46978 * 63.61634 * 1 2 3 33 33 H 1.08997 * 109.49376 * 57.68557 * 3 2 1 34 34 H 1.08996 * 109.53153 * 297.58944 * 3 2 1 35 35 H 1.08995 * 109.50506 * 296.91474 * 4 3 2 36 36 H 1.09001 * 109.54090 * 176.80257 * 4 3 2 37 37 H 0.96994 * 119.99934 * 359.97438 * 10 8 6 38 38 H 1.09001 * 109.47364 * 299.99991 * 11 10 8 39 39 H 1.09001 * 109.47310 * 60.00252 * 11 10 8 40 40 H 1.09004 * 111.10881 * 272.95042 * 14 12 11 41 41 H 1.09004 * 111.11029 * 37.06945 * 14 12 11 42 42 H 1.09007 * 110.92228 * 208.22937 * 15 14 12 43 43 H 1.08997 * 110.95564 * 84.60462 * 15 14 12 44 44 H 1.08997 * 113.80558 * 206.86586 * 17 16 15 45 45 H 1.08996 * 113.79989 * 338.36787 * 17 16 15 46 46 H 0.96993 * 119.99773 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.80517 * 221.59723 * 27 18 17 48 48 H 1.09007 * 113.79684 * 90.09615 * 27 18 17 49 49 H 1.09002 * 109.50864 * 62.45469 * 29 2 1 50 50 H 1.09003 * 109.50425 * 302.37108 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3728 0.0000 4 6 3.5267 1.3257 0.0598 5 8 4.0183 0.5565 -1.0411 6 6 3.5250 -0.7854 -1.0718 7 1 3.8385 -1.3093 -0.1686 8 6 4.0733 -1.4966 -2.2819 9 8 4.7428 -0.8893 -3.0905 10 7 3.8196 -2.8075 -2.4657 11 6 4.3522 -3.4986 -3.6425 12 6 3.9208 -4.9663 -3.6107 13 1 2.8335 -5.0407 -3.6269 14 6 4.5325 -5.7328 -4.8110 15 6 4.5498 -7.1857 -4.2583 16 6 4.8149 -6.9556 -2.7613 17 6 4.2454 -8.0364 -1.8358 18 7 5.5677 -8.6843 -1.9528 19 6 6.0220 -9.9683 -1.8116 20 1 7.0696 -10.1892 -1.9539 21 6 5.1360 -10.9863 -1.4863 22 7 3.8591 -10.7173 -1.3141 23 14 5.7557 -12.7381 -1.2945 24 1 6.7721 -12.7878 -0.2129 25 1 4.6200 -13.6296 -0.9472 26 1 6.3678 -13.1891 -2.5700 27 6 6.2038 -7.3925 -2.2821 28 8 4.4482 -5.6162 -2.4405 29 6 1.9959 -0.7598 -1.1430 30 1 -0.3633 -1.0257 0.0647 31 1 -0.3633 0.5689 0.8558 32 1 -0.3633 0.4567 -0.9206 33 1 1.6157 1.9096 0.8684 34 1 1.6845 1.8838 -0.9104 35 1 3.8402 0.8634 0.9958 36 1 3.9252 2.3387 0.0028 37 1 3.2844 -3.2932 -1.8189 38 1 3.9671 -3.0267 -4.5464 39 1 5.4406 -3.4393 -3.6371 40 1 3.8953 -5.6555 -5.6920 41 1 5.5420 -5.3829 -5.0269 42 1 5.3542 -7.7650 -4.7116 43 1 3.5871 -7.6730 -4.4127 44 1 4.0176 -7.6800 -0.8312 45 1 3.4328 -8.6118 -2.2793 46 1 3.2402 -11.4285 -1.0864 47 1 6.9441 -7.4573 -3.0795 48 1 6.5614 -6.8436 -1.4109 49 1 1.6828 -0.2835 -2.0722 50 1 1.6128 -1.7797 -1.1098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053586310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:35 Heat of formation + Delta-G solvation = -78.988146 kcal Electronic energy + Delta-G solvation = -30164.270074 eV Core-core repulsion = 25999.768200 eV Total energy + Delta-G solvation = -4164.501874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55910 -41.17718 -39.76158 -38.10743 -36.75829 -35.67433 -34.11295 -33.20007 -32.64854 -30.66238 -29.74387 -28.60166 -26.73745 -26.28838 -25.14847 -24.84724 -23.44014 -22.37262 -21.91005 -21.26699 -20.34012 -18.78353 -18.63023 -17.96077 -17.68169 -17.10288 -17.02578 -16.62931 -16.40896 -16.27499 -16.01883 -15.81301 -15.63183 -15.47660 -15.05990 -14.85939 -14.52980 -14.33386 -14.07017 -13.97166 -13.47079 -13.37488 -13.31342 -12.96731 -12.93021 -12.81525 -12.79334 -12.61593 -12.46751 -12.43804 -12.27464 -12.05130 -11.84868 -11.78337 -11.64155 -11.50193 -10.89429 -10.84989 -10.77556 -10.24754 -10.16564 -9.50858 -8.96290 -7.91974 -5.26217 1.44061 1.46034 1.49497 1.55571 1.76012 2.43203 2.68882 2.74758 3.04501 3.26769 3.44192 3.60520 3.60894 3.70344 3.71637 3.80694 3.88787 3.92933 3.96305 4.13616 4.17457 4.28997 4.43709 4.48195 4.55244 4.57445 4.60738 4.62869 4.64832 4.74330 4.77840 4.83681 4.89864 4.93437 4.97403 5.00743 5.01611 5.11891 5.18912 5.24045 5.33851 5.36794 5.50247 5.78337 5.88199 5.88847 5.97388 6.26294 6.45717 6.89889 7.11794 7.57869 8.53155 9.25036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002174 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.046585 B =12877.299169 C =13541.339107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.015 3.985 4 C 0.056 3.944 5 O -0.388 6.388 6 C 0.080 3.920 7 H 0.104 0.896 8 C 0.521 3.479 9 O -0.568 6.568 10 N -0.707 5.707 11 C 0.130 3.870 12 C 0.066 3.934 13 H 0.094 0.906 14 C -0.133 4.133 15 C -0.112 4.112 16 C 0.084 3.916 17 C 0.161 3.839 18 N -0.631 5.631 19 C -0.236 4.236 20 H 0.084 0.916 21 C -0.064 4.064 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.115 3.885 28 O -0.374 6.374 29 C 0.036 3.964 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.416 0.584 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.039 0.961 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 23.321 -1.746 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.112 4.112 4 C -0.020 4.020 5 O -0.307 6.307 6 C 0.018 3.982 7 H 0.122 0.878 8 C 0.306 3.694 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.006 3.994 12 C 0.008 3.992 13 H 0.112 0.888 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.043 3.957 17 C 0.035 3.965 18 N -0.359 5.359 19 C -0.364 4.364 20 H 0.102 0.898 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.199 1.199 27 C -0.011 4.011 28 O -0.293 6.293 29 C -0.093 4.093 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.129 0.871 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.027 0.973 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.048 23.379 -1.782 24.483 hybrid contribution -0.357 -1.191 0.197 1.259 sum -7.405 22.188 -1.586 23.445 Atomic orbital electron populations 1.22463 0.85015 1.03496 1.01424 1.62267 1.09809 1.14030 1.41253 1.22910 0.95991 0.89628 1.02713 1.22998 0.92882 0.97022 0.89124 1.88077 1.70242 1.22407 1.49940 1.21942 0.94150 0.85350 0.96732 0.87840 1.20414 0.79957 0.82320 0.86716 1.90697 1.40314 1.67116 1.46561 1.45760 1.54471 1.08819 1.26978 1.21566 0.99352 0.89801 0.88643 1.23410 0.99069 0.90932 0.85751 0.88784 1.23258 1.03220 0.92493 0.98152 1.22573 1.02928 0.97945 0.91534 1.23721 0.94951 0.81122 0.95910 1.22404 0.89868 0.89158 0.95062 1.45978 1.06105 1.01889 1.81956 1.19328 0.93809 0.82650 1.40585 0.89775 1.25647 0.95860 1.02062 1.02197 1.69997 1.02699 1.32489 1.54815 0.85122 0.76706 0.79052 0.78256 1.20581 1.21901 1.19901 1.22945 0.95250 0.85419 0.97461 1.88326 1.82277 1.24575 1.34114 1.22621 0.92525 1.01333 0.92836 0.90282 0.89648 0.95291 0.87077 0.94284 0.91323 0.86208 0.74760 0.88672 0.91988 0.86817 0.89410 0.90501 0.90686 0.97263 0.93117 0.94112 0.91997 0.94549 0.94240 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.61 127.69 1.23 1.47 16 2 N -0.55 -7.91 4.99 -921.17 -4.60 -12.50 16 3 C 0.02 0.20 5.67 86.30 0.49 0.69 16 4 C 0.06 0.85 7.01 72.02 0.50 1.35 16 5 O -0.39 -9.32 10.01 -130.04 -1.30 -10.62 16 6 C 0.08 1.66 3.21 29.88 0.10 1.75 16 7 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 8 C 0.52 13.21 7.18 87.66 0.63 13.84 16 9 O -0.57 -19.40 16.51 15.91 0.26 -19.13 16 10 N -0.71 -14.91 5.44 -463.06 -2.52 -17.43 16 11 C 0.13 2.76 5.40 86.38 0.47 3.23 16 12 C 0.07 1.47 3.52 31.28 0.11 1.58 16 13 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.13 -2.79 6.58 32.12 0.21 -2.58 16 15 C -0.11 -3.41 6.32 31.70 0.20 -3.21 16 16 C 0.08 3.10 1.68 -10.31 -0.02 3.09 16 17 C 0.16 7.79 7.01 86.23 0.60 8.40 16 18 N -0.63 -32.84 3.67 -732.66 -2.69 -35.53 16 19 C -0.24 -13.28 10.70 84.04 0.90 -12.38 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 22 N -0.95 -57.03 11.39 21.65 0.25 -56.79 16 23 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.11 4.80 8.37 86.24 0.72 5.52 16 28 O -0.37 -11.84 10.67 -148.98 -1.59 -13.43 16 29 C 0.04 0.58 4.90 86.31 0.42 1.00 16 30 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 0.55 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 7.39 8.28 -92.71 -0.77 6.62 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.09 1.74 8.05 -2.38 -0.02 1.72 16 42 H 0.08 2.48 7.83 -2.38 -0.02 2.46 16 43 H 0.07 2.35 8.01 -2.39 -0.02 2.33 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 2.68 7.05 -2.39 -0.02 2.67 16 46 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 47 H 0.06 2.38 7.98 -2.39 -0.02 2.36 16 48 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.11 1.40 8.01 -2.39 -0.02 1.38 16 Total: -1.00 -76.01 399.70 -2.97 -78.98 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.16 Total: 18.44 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.03 Total: 20.57 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -9.56 Total: -122.25 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -2.63 Total: -43.18 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.01 -2.97 -78.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.009 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds