Wall clock time and date at job start Tue Mar 31 2020 23:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99758 * 2 1 4 4 C 1.53780 * 113.61323 * 210.00217 * 3 2 1 5 5 C 1.53781 * 87.08320 * 220.01858 * 4 3 2 6 6 C 1.50702 * 113.61545 * 139.97629 * 5 4 3 7 7 O 1.21276 * 120.00004 * 1.53817 * 6 5 4 8 8 N 1.34783 * 119.99849 * 181.52699 * 6 5 4 9 9 C 1.47737 * 121.63252 * 0.02562 * 8 6 5 10 10 C 1.52990 * 108.95999 * 271.67121 * 9 8 6 11 11 C 1.50710 * 109.42427 * 305.26706 * 10 9 8 12 12 O 1.21276 * 120.12284 * 295.13356 * 11 10 9 13 13 N 1.35491 * 119.64333 * 115.17358 * 11 10 9 14 14 C 1.47124 * 118.09984 * 180.26704 * 13 11 10 15 15 C 1.53009 * 109.07687 * 100.16801 * 14 13 11 16 16 N 1.47767 * 108.79815 * 301.39987 * 15 14 13 17 17 C 1.36940 * 121.63510 * 277.41303 * 16 15 14 18 18 H 1.07993 * 120.00101 * 147.85376 * 17 16 15 19 19 C 1.38818 * 119.99733 * 327.84820 * 17 16 15 20 20 N 1.31620 * 119.99961 * 154.69802 * 19 17 16 21 21 Si 1.86796 * 120.00077 * 334.69446 * 19 17 16 22 22 H 1.48502 * 109.46982 * 95.23883 * 21 19 17 23 23 H 1.48502 * 109.47433 * 215.23488 * 21 19 17 24 24 H 1.48495 * 109.47489 * 335.23551 * 21 19 17 25 25 C 1.47750 * 116.73039 * 97.43735 * 16 15 14 26 26 C 1.47766 * 121.63049 * 179.97438 * 8 6 5 27 27 C 1.53782 * 87.17263 * 25.39144 * 5 4 3 28 28 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46978 * 299.99414 * 1 2 3 30 30 H 1.08998 * 109.47444 * 60.00036 * 1 2 3 31 31 H 1.08996 * 112.85401 * 341.19454 * 3 2 1 32 32 H 1.09002 * 113.61870 * 105.47231 * 4 3 2 33 33 H 1.09003 * 113.61904 * 334.56667 * 4 3 2 34 34 H 1.08997 * 113.61562 * 270.80118 * 5 4 3 35 35 H 1.09006 * 109.57231 * 31.54447 * 9 8 6 36 36 H 1.08999 * 109.57491 * 151.79238 * 9 8 6 37 37 H 1.09004 * 109.47429 * 65.12568 * 10 9 8 38 38 H 1.09001 * 109.47875 * 185.14758 * 10 9 8 39 39 H 0.97001 * 120.94739 * 0.29216 * 13 11 10 40 40 H 1.09001 * 109.53868 * 340.28837 * 14 13 11 41 41 H 1.09005 * 109.59919 * 220.08541 * 14 13 11 42 42 H 1.09000 * 109.58245 * 181.60125 * 15 14 13 43 43 H 1.09003 * 109.69585 * 61.26552 * 15 14 13 44 44 H 0.96994 * 120.00105 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58047 * 105.89438 * 25 16 15 46 46 H 1.08995 * 109.57677 * 345.49483 * 25 16 15 47 47 H 1.09002 * 109.58378 * 169.83330 * 26 8 6 48 48 H 1.09001 * 109.58544 * 290.23561 * 26 8 6 49 49 H 1.08994 * 113.61743 * 89.15840 * 27 5 4 50 50 H 1.09000 * 113.61419 * 220.06580 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3754 1.3719 -0.7046 5 6 3.8227 2.3182 0.4221 6 6 5.2327 2.0718 0.8934 7 8 5.9060 1.2107 0.3678 8 7 5.7457 2.8084 1.8988 9 6 4.9578 3.8660 2.5646 10 6 5.1485 5.1805 1.8055 11 6 6.6200 5.4880 1.6976 12 8 7.2687 5.7172 2.6963 13 7 7.2129 5.5076 0.4795 14 6 8.6522 5.8057 0.4141 15 6 9.4276 4.4960 0.2580 16 7 9.1164 3.6187 1.4056 17 6 9.7598 3.7523 2.6071 18 1 9.2397 3.5265 3.5262 19 6 11.0806 4.1780 2.6435 20 7 11.5499 4.7761 3.7179 21 14 12.1919 3.9018 1.1677 22 1 12.1991 5.1201 0.3186 23 1 13.5724 3.6155 1.6341 24 1 11.6879 2.7504 0.3770 25 6 8.0775 2.5899 1.1932 26 6 7.1233 2.5970 2.3897 27 6 2.7533 1.6511 1.3033 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.3137 2.0789 -0.3238 32 1 3.3383 1.8472 -1.6848 33 1 3.9088 0.4214 -0.7139 34 1 3.6235 3.3695 0.2142 35 1 3.9027 3.5921 2.5613 36 1 5.3009 3.9847 3.5924 37 1 4.7242 5.0876 0.8057 38 1 4.6452 5.9857 2.3407 39 1 6.7030 5.3306 -0.3264 40 1 8.9628 6.3061 1.3313 41 1 8.8532 6.4524 -0.4400 42 1 10.4972 4.7049 0.2372 43 1 9.1336 4.0033 -0.6688 44 1 12.4728 5.0732 3.7435 45 1 8.5464 1.6097 1.1060 46 1 7.5227 2.8138 0.2821 47 1 7.3967 3.4039 3.0698 48 1 7.1829 1.6415 2.9109 49 1 3.1162 0.7771 1.8440 50 1 2.2146 2.3514 1.9416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070973005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:38 Heat of formation + Delta-G solvation = -39.415927 kcal Electronic energy + Delta-G solvation = -32480.681027 eV Core-core repulsion = 28317.895133 eV Total energy + Delta-G solvation = -4162.785894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.68145 -39.34165 -38.35747 -36.27713 -35.85078 -35.56295 -33.63740 -31.77235 -30.60441 -29.81194 -27.72993 -26.82389 -25.99013 -25.57715 -24.25779 -23.78322 -22.26821 -20.48080 -20.17659 -19.79849 -18.86707 -17.56885 -16.82918 -16.74551 -16.20385 -16.01034 -15.75486 -15.51293 -15.28465 -15.07759 -14.75323 -14.49793 -14.03933 -13.84456 -13.58964 -13.37106 -13.01541 -12.77156 -12.71359 -12.68654 -12.43143 -12.26200 -12.08793 -12.04867 -11.90817 -11.52904 -11.35053 -11.20709 -11.06405 -10.96816 -10.87144 -10.59565 -10.48784 -10.26392 -9.87868 -9.78833 -9.45170 -9.36032 -9.08990 -8.71024 -8.34623 -8.20937 -6.71464 -5.83555 -3.15513 2.76706 3.06589 3.28615 3.36702 3.55053 3.57654 3.61159 3.81016 4.20202 4.30611 4.49441 4.52932 4.64823 4.66573 4.84964 4.90365 5.01545 5.04819 5.06506 5.14998 5.23878 5.31748 5.36343 5.49232 5.51073 5.54842 5.63689 5.69569 5.77271 5.80983 5.86285 6.00097 6.02346 6.04861 6.13873 6.21523 6.40371 6.44019 6.51084 6.83231 6.93017 6.94656 7.01824 7.11364 7.70280 8.04712 8.12906 8.38646 8.49748 8.92088 9.05220 9.84721 10.28365 11.32768 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.003418 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.909799 B = 8190.856771 C = 8620.845068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.526 3.474 7 O -0.532 6.532 8 N -0.610 5.610 9 C 0.119 3.881 10 C -0.160 4.160 11 C 0.512 3.488 12 O -0.503 6.503 13 N -0.724 5.724 14 C 0.092 3.908 15 C 0.117 3.883 16 N -0.600 5.600 17 C -0.235 4.235 18 H 0.081 0.919 19 C 0.030 3.970 20 N -0.898 5.898 21 Si 0.871 3.129 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.274 1.274 25 C 0.148 3.852 26 C 0.094 3.906 27 C -0.138 4.138 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.388 0.612 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.259 0.741 45 H 0.029 0.971 46 H 0.054 0.946 47 H 0.115 0.885 48 H 0.053 0.947 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.707 -1.018 -8.665 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.003 3.997 4 C -0.150 4.150 5 C -0.158 4.158 6 C 0.313 3.687 7 O -0.408 6.408 8 N -0.344 5.344 9 C -0.005 4.005 10 C -0.202 4.202 11 C 0.297 3.703 12 O -0.376 6.376 13 N -0.376 5.376 14 C -0.034 4.034 15 C -0.010 4.010 16 N -0.324 5.324 17 C -0.364 4.364 18 H 0.098 0.902 19 C -0.169 4.169 20 N -0.540 5.540 21 Si 0.703 3.297 22 H -0.218 1.218 23 H -0.234 1.234 24 H -0.199 1.199 25 C 0.022 3.978 26 C -0.028 4.028 27 C -0.176 4.176 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.221 0.779 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.133 0.867 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.591 -1.453 -8.083 24.038 hybrid contribution 0.289 0.190 -1.216 1.264 sum -22.302 -1.263 -9.299 24.196 Atomic orbital electron populations 1.22792 0.81364 1.02760 0.99825 1.87997 1.19467 1.27293 1.94505 1.23754 0.94066 0.85293 0.96568 1.23101 0.94189 1.00857 0.96886 1.22522 0.92925 1.01037 0.99330 1.20077 0.87891 0.81159 0.79534 1.90714 1.61136 1.32954 1.56027 1.48862 1.15383 1.35184 1.34928 1.21720 0.96158 0.85300 0.97338 1.22223 0.95699 0.99900 1.02336 1.20314 0.88676 0.77350 0.83968 1.90841 1.65127 1.46539 1.35090 1.46055 1.10566 1.73259 1.07756 1.22176 0.80028 0.98589 1.02592 1.21844 0.97767 0.91017 0.90364 1.44709 1.43781 1.33242 1.10704 1.18533 0.92371 1.41621 0.83840 0.90161 1.25259 0.96783 0.99080 0.95792 1.69931 1.15690 1.38859 1.29568 0.87033 0.80355 0.78326 0.83960 1.21812 1.23390 1.19939 1.21344 0.89490 0.92028 0.94965 1.22762 0.78530 1.02523 0.98995 1.23468 0.95911 1.01063 0.97110 0.89752 0.94051 0.94067 0.89288 0.90580 0.87649 0.87071 0.89986 0.88963 0.90837 0.88009 0.77895 0.88376 0.92865 0.92990 0.93881 0.93095 0.95349 0.92722 0.86689 0.92830 0.88656 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.28 16 2 O -0.37 -3.76 10.72 -35.23 -0.38 -4.14 16 3 C 0.06 0.51 4.31 -25.83 -0.11 0.40 16 4 C -0.11 -1.12 7.23 -25.92 -0.19 -1.31 16 5 C -0.14 -1.32 2.88 -90.96 -0.26 -1.58 16 6 C 0.53 7.50 6.58 -10.98 -0.07 7.43 16 7 O -0.53 -9.77 14.28 5.56 0.08 -9.69 16 8 N -0.61 -8.82 2.44 -171.63 -0.42 -9.24 16 9 C 0.12 1.33 5.40 -3.37 -0.02 1.31 16 10 C -0.16 -1.73 6.18 -27.88 -0.17 -1.91 16 11 C 0.51 8.40 4.74 -10.66 -0.05 8.35 16 12 O -0.50 -11.02 14.91 5.56 0.08 -10.94 16 13 N -0.72 -11.15 4.77 -59.67 -0.28 -11.43 16 14 C 0.09 1.72 6.57 -3.70 -0.02 1.69 16 15 C 0.12 2.49 5.18 -3.34 -0.02 2.47 16 16 N -0.60 -14.18 1.92 -171.17 -0.33 -14.51 16 17 C -0.24 -6.56 9.07 -15.06 -0.14 -6.70 16 18 H 0.08 2.44 6.72 -52.49 -0.35 2.09 16 19 C 0.03 0.88 5.33 -17.43 -0.09 0.78 16 20 N -0.90 -27.97 13.97 55.49 0.78 -27.20 16 21 Si 0.87 22.69 25.04 -169.99 -4.26 18.43 16 22 H -0.29 -7.23 6.66 56.52 0.38 -6.86 16 23 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 24 H -0.27 -7.14 7.11 56.52 0.40 -6.73 16 25 C 0.15 3.13 4.56 -3.33 -0.02 3.11 16 26 C 0.09 1.79 4.86 -3.32 -0.02 1.77 16 27 C -0.14 -1.18 6.75 -25.82 -0.17 -1.35 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 1.35 7.45 -51.93 -0.39 0.96 16 34 H 0.11 0.80 6.94 -51.93 -0.36 0.44 16 35 H 0.08 0.64 6.04 -51.93 -0.31 0.33 16 36 H 0.09 1.16 7.83 -51.93 -0.41 0.75 16 37 H 0.07 0.60 6.91 -51.93 -0.36 0.25 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.39 4.72 8.71 -40.82 -0.36 4.36 16 40 H 0.10 2.25 7.02 -51.93 -0.36 1.88 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 1.23 2.77 -51.93 -0.14 1.08 16 43 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 1.10 5.96 -51.93 -0.31 0.79 16 47 H 0.12 2.51 4.15 -51.93 -0.22 2.29 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 50 H 0.08 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -36.12 374.74 -7.08 -43.20 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.74 Total: 4.10 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -0.25 Total: 15.76 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.26 Total: -62.38 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.22 Total: -24.76 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.26 Total: 18.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.12 -7.08 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070973005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.783 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds