Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.45750 * 117.94597 * 2 1 4 4 C 1.52920 * 110.48998 * 161.20883 * 3 2 1 5 5 H 1.08997 * 109.59997 * 290.99500 * 4 3 2 6 6 C 1.50700 * 109.73861 * 170.58320 * 4 3 2 7 7 O 1.21279 * 119.99885 * 240.72820 * 6 4 3 8 8 N 1.34771 * 119.99727 * 60.73478 * 6 4 3 9 9 C 1.46501 * 119.99998 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47566 * 180.02562 * 9 8 6 11 11 H 1.09003 * 109.39919 * 305.00220 * 10 9 8 12 12 C 1.54290 * 109.40382 * 185.16437 * 10 9 8 13 13 N 1.48191 * 110.68686 * 200.48640 * 12 10 9 14 14 C 1.36938 * 118.50629 * 138.77479 * 13 12 10 15 15 H 1.08001 * 119.99455 * 206.12283 * 14 13 12 16 16 C 1.38812 * 120.00627 * 26.11860 * 14 13 12 17 17 N 1.31616 * 119.99435 * 15.51510 * 16 14 13 18 18 Si 1.86792 * 120.00375 * 195.50581 * 16 14 13 19 19 H 1.48509 * 109.46961 * 90.00445 * 18 16 14 20 20 H 1.48496 * 109.47709 * 210.00054 * 18 16 14 21 21 H 1.48504 * 109.47329 * 330.00450 * 18 16 14 22 22 C 1.44452 * 122.97476 * 318.79576 * 13 12 10 23 23 C 1.54875 * 109.32925 * 88.91572 * 22 13 12 24 24 C 1.47685 * 109.67825 * 290.09940 * 23 22 13 25 25 O 1.40516 * 109.40509 * 64.83277 * 10 9 8 26 26 C 1.53349 * 108.67213 * 50.74928 * 4 3 2 27 27 C 1.53070 * 108.42398 * 292.47137 * 26 4 3 28 28 C 1.33353 * 117.94487 * 180.26307 * 2 1 3 29 29 O 1.21276 * 118.24325 * 1.95986 * 28 2 1 30 30 H 1.08992 * 109.47365 * 179.73904 * 1 2 3 31 31 H 1.09007 * 109.46988 * 299.74178 * 1 2 3 32 32 H 1.09005 * 109.46742 * 59.73642 * 1 2 3 33 33 H 1.09005 * 109.30141 * 281.52138 * 3 2 1 34 34 H 1.08999 * 109.30701 * 40.89581 * 3 2 1 35 35 H 0.97002 * 120.00558 * 0.02562 * 8 6 4 36 36 H 1.09002 * 109.46912 * 300.00316 * 9 8 6 37 37 H 1.08998 * 109.47018 * 59.99690 * 9 8 6 38 38 H 1.08998 * 109.23585 * 320.79468 * 12 10 9 39 39 H 1.08996 * 109.23419 * 80.22038 * 12 10 9 40 40 H 0.97003 * 120.00198 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.49292 * 208.86974 * 22 13 12 42 42 H 1.09003 * 109.49766 * 328.92596 * 22 13 12 43 43 H 1.08995 * 109.43515 * 50.16137 * 23 22 13 44 44 H 1.09001 * 109.43574 * 170.03710 * 23 22 13 45 45 H 1.08998 * 108.64920 * 181.88321 * 24 23 22 46 46 H 1.08998 * 108.64685 * 299.85798 * 24 23 22 47 47 H 1.09001 * 109.67424 * 172.73945 * 26 4 3 48 48 H 1.08998 * 109.67511 * 52.20578 * 26 4 3 49 49 H 1.09003 * 109.40379 * 288.77034 * 27 26 4 50 50 H 1.09002 * 109.40184 * 169.03128 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5969 1.1249 0.4614 5 1 3.6167 0.8691 1.5208 6 6 4.3498 2.4110 0.2375 7 8 5.3129 2.4294 -0.4994 8 7 3.9529 3.5406 0.8562 9 6 4.6851 4.7908 0.6390 10 6 4.0337 5.9113 1.4520 11 1 2.9761 5.9763 1.1964 12 6 4.7240 7.2514 1.1228 13 7 4.4851 8.2416 2.1991 14 6 5.5233 9.0439 2.5912 15 1 5.5425 9.4519 3.5910 16 6 6.5509 9.3327 1.7038 17 7 6.3931 9.1038 0.4173 18 14 8.1574 10.0465 2.3353 19 1 9.0918 8.9420 2.6706 20 1 8.7632 10.9062 1.2870 21 1 7.8945 10.8586 3.5505 22 6 3.2070 8.3985 2.8536 23 6 3.1328 7.4419 4.0694 24 6 3.0437 6.0450 3.5984 25 8 4.1664 5.6315 2.8226 26 6 4.2478 -0.0005 -0.3518 27 6 3.5840 -1.3241 0.0363 28 6 2.0900 -1.1780 -0.0054 29 8 1.4157 -2.1852 -0.0466 30 1 -0.3633 -1.0276 -0.0047 31 1 -0.3633 0.5099 0.8924 32 1 -0.3633 0.5180 -0.8877 33 1 2.1354 1.7021 -1.0081 34 1 1.6301 1.9703 0.6735 35 1 3.1829 3.5258 1.4459 36 1 5.7201 4.6657 0.9575 37 1 4.6595 5.0476 -0.4200 38 1 5.7963 7.0867 1.0180 39 1 4.3268 7.6389 0.1846 40 1 7.1113 9.3052 -0.2029 41 1 3.0964 9.4282 3.1936 42 1 2.4074 8.1591 2.1525 43 1 4.0271 7.5623 4.6806 44 1 2.2519 7.6806 4.6654 45 1 2.9586 5.3897 4.4652 46 1 2.1441 5.9383 2.9923 47 1 5.3138 -0.0453 -0.1287 48 1 4.1026 0.1845 -1.4161 49 1 3.8926 -1.6021 1.0441 50 1 3.8914 -2.1020 -0.6626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073902184.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = -113.466980 kcal Electronic energy + Delta-G solvation = -30714.950123 eV Core-core repulsion = 26548.953135 eV Total energy + Delta-G solvation = -4165.996989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.84566 -40.78597 -40.08807 -37.40694 -36.86901 -36.02839 -34.99403 -34.12811 -32.94916 -31.35279 -30.05978 -28.13450 -27.18948 -27.02354 -25.59247 -24.51891 -23.41368 -22.34944 -21.62155 -21.14851 -19.76208 -18.87822 -18.48697 -17.76066 -17.65373 -17.37739 -17.11621 -16.67938 -16.65058 -16.16611 -16.10619 -15.65637 -15.34606 -15.23535 -14.99704 -14.59451 -14.44576 -14.30911 -14.16354 -13.86524 -13.73692 -13.61988 -13.27668 -13.15971 -13.00963 -12.86618 -12.77944 -12.72427 -12.42665 -12.28789 -12.25544 -11.97509 -11.95819 -11.76898 -11.42954 -11.33266 -10.96518 -10.77219 -10.54715 -10.23488 -10.12501 -9.80105 -8.65912 -7.85335 -5.29796 1.44109 1.47343 1.52173 1.54003 1.56319 1.94139 2.15047 2.51852 2.95992 3.28008 3.42980 3.52408 3.60938 3.63432 3.69377 4.08094 4.14078 4.18715 4.22139 4.28083 4.30396 4.34661 4.44162 4.49524 4.53855 4.61642 4.63794 4.66601 4.73015 4.81929 4.86565 4.91127 4.93188 4.98573 5.01566 5.17435 5.17653 5.24734 5.29313 5.34733 5.42233 5.54322 5.63416 5.73705 6.33944 6.40698 6.53713 6.61575 7.06888 7.18501 7.22721 7.95335 8.31751 9.19078 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.002505 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.225355 B =11174.532489 C =12097.217061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.125 3.875 4 C -0.113 4.113 5 H 0.131 0.869 6 C 0.522 3.478 7 O -0.578 6.578 8 N -0.704 5.704 9 C 0.136 3.864 10 C 0.077 3.923 11 H 0.078 0.922 12 C 0.171 3.829 13 N -0.603 5.603 14 C -0.258 4.258 15 H 0.060 0.940 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.957 3.043 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.270 1.270 22 C 0.147 3.853 23 C -0.171 4.171 24 C 0.068 3.932 25 O -0.378 6.378 26 C -0.100 4.100 27 C -0.125 4.125 28 C 0.510 3.490 29 O -0.600 6.600 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.415 0.585 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.012 0.988 40 H 0.248 0.752 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.120 0.880 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 -16.676 2.537 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.334 5.334 3 C 0.002 3.998 4 C -0.135 4.135 5 H 0.149 0.851 6 C 0.308 3.692 7 O -0.457 6.457 8 N -0.356 5.356 9 C 0.011 3.989 10 C 0.017 3.983 11 H 0.096 0.904 12 C 0.045 3.955 13 N -0.325 5.325 14 C -0.389 4.389 15 H 0.078 0.922 16 C -0.244 4.244 17 N -0.579 5.579 18 Si 0.787 3.213 19 H -0.218 1.218 20 H -0.221 1.221 21 H -0.195 1.195 22 C 0.021 3.979 23 C -0.211 4.211 24 C -0.008 4.008 25 O -0.296 6.296 26 C -0.139 4.139 27 C -0.165 4.165 28 C 0.300 3.700 29 O -0.482 6.482 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.138 0.862 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.017 -17.182 1.948 21.644 hybrid contribution 0.888 1.081 0.140 1.406 sum -12.128 -16.101 2.088 20.266 Atomic orbital electron populations 1.21918 0.78402 1.04049 1.03365 1.47218 1.08333 1.05795 1.72072 1.21411 0.90322 0.84593 1.03448 1.21602 0.94898 0.92372 1.04596 0.85119 1.20698 0.84157 0.85237 0.79064 1.90737 1.29747 1.86145 1.39068 1.45798 1.33404 1.07912 1.48494 1.21202 0.95717 0.82868 0.99140 1.22747 0.99444 0.93558 0.82553 0.90387 1.21396 0.98797 0.86201 0.89065 1.43828 1.07588 1.38682 1.42447 1.19429 1.00772 1.23461 0.95231 0.92205 1.25653 1.02569 1.00976 0.95152 1.70165 1.32427 1.53852 1.01467 0.85411 0.80768 0.77712 0.77440 1.21813 1.22135 1.19451 1.20914 0.86615 0.97235 0.93165 1.22155 1.01795 0.97575 0.99624 1.21583 0.87796 0.95385 0.96002 1.87458 1.44276 1.80090 1.17791 1.21444 1.00917 0.91420 1.00073 1.21662 0.88919 0.99511 1.06372 1.20683 0.91956 0.82595 0.74778 1.90688 1.67402 1.37207 1.52884 0.90935 0.89667 0.90711 0.90791 0.86918 0.74769 0.93395 0.90722 0.94069 0.97047 0.94286 0.94322 0.93418 0.94108 0.88625 0.88577 0.91518 0.89689 0.91314 0.86246 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.48 127.77 1.34 2.10 16 2 N -0.60 -8.53 3.21 -851.61 -2.73 -11.27 16 3 C 0.13 1.31 5.57 86.49 0.48 1.80 16 4 C -0.11 -1.52 2.59 -11.45 -0.03 -1.55 16 5 H 0.13 1.24 8.12 -2.39 -0.02 1.22 16 6 C 0.52 11.43 7.14 87.66 0.63 12.06 16 7 O -0.58 -18.42 15.89 -3.03 -0.05 -18.46 16 8 N -0.70 -14.64 5.41 -463.06 -2.50 -17.14 16 9 C 0.14 4.09 5.24 86.38 0.45 4.54 16 10 C 0.08 2.47 2.35 31.03 0.07 2.55 16 11 H 0.08 2.05 7.20 -2.39 -0.02 2.03 16 12 C 0.17 7.78 4.50 86.49 0.39 8.17 16 13 N -0.60 -28.69 2.59 -696.45 -1.80 -30.49 16 14 C -0.26 -13.99 9.43 84.03 0.79 -13.20 16 15 H 0.06 3.22 7.88 -2.91 -0.02 3.20 16 16 C -0.05 -2.68 4.88 84.86 0.41 -2.27 16 17 N -0.93 -54.43 10.98 21.65 0.24 -54.20 16 18 Si 0.96 45.45 29.58 68.60 2.03 47.48 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 C 0.15 5.48 5.68 87.40 0.50 5.98 16 23 C -0.17 -5.03 6.03 29.57 0.18 -4.85 16 24 C 0.07 1.68 6.05 70.32 0.43 2.11 16 25 O -0.38 -12.19 9.77 -144.85 -1.42 -13.60 16 26 C -0.10 -1.50 4.71 30.73 0.14 -1.36 16 27 C -0.13 -1.70 6.03 29.71 0.18 -1.52 16 28 C 0.51 9.60 7.47 87.71 0.66 10.26 16 29 O -0.60 -16.18 15.95 -3.02 -0.05 -16.23 16 30 H 0.07 1.20 6.59 -2.39 -0.02 1.18 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.85 8.11 -2.38 -0.02 0.83 16 34 H 0.11 0.58 7.85 -2.39 -0.02 0.56 16 35 H 0.42 5.81 8.14 -92.71 -0.75 5.05 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 2.20 6.24 -2.39 -0.01 2.19 16 39 H 0.01 0.57 8.02 -2.39 -0.02 0.55 16 40 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.04 1.50 7.97 -2.38 -0.02 1.48 16 42 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 1.26 7.26 -2.39 -0.02 1.24 16 47 H 0.08 1.40 7.90 -2.39 -0.02 1.39 16 48 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 49 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -77.21 391.94 0.51 -76.70 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.18 Total: 12.41 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 6.62 Total: 24.81 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -6.80 Total: -113.09 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.51 Total: -48.30 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.21 0.51 -76.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073902184.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.768 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds