Wall clock time and date at job start Tue Mar 31 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00221 * 2 1 4 4 C 1.34775 * 120.00132 * 179.97438 * 2 1 3 5 5 O 1.21286 * 119.99862 * 0.02562 * 4 2 1 6 6 C 1.50705 * 120.00192 * 179.97438 * 4 2 1 7 7 H 1.09001 * 110.54799 * 57.88424 * 6 4 2 8 8 C 1.54997 * 110.61908 * 295.00216 * 6 4 2 9 9 C 1.54810 * 102.09119 * 204.47484 * 8 6 4 10 10 C 1.54100 * 104.18973 * 20.88049 * 9 8 6 11 11 H 1.09000 * 109.87727 * 242.46044 * 10 9 8 12 12 C 1.50695 * 109.87969 * 121.45416 * 10 9 8 13 13 O 1.21279 * 120.00022 * 245.30720 * 12 10 9 14 14 N 1.34773 * 120.00151 * 65.58067 * 12 10 9 15 15 C 1.46508 * 119.99830 * 355.11215 * 14 12 10 16 16 C 1.46498 * 120.00318 * 175.11196 * 14 12 10 17 17 C 1.52999 * 109.47187 * 93.96199 * 16 14 12 18 18 H 1.08997 * 112.96130 * 294.40074 * 17 16 14 19 19 C 1.53937 * 113.76889 * 66.08325 * 17 16 14 20 20 C 1.53945 * 86.29188 * 137.90884 * 19 17 16 21 21 N 1.47583 * 86.11509 * 336.38859 * 20 19 17 22 22 C 1.36933 * 134.49542 * 204.63137 * 21 20 19 23 23 H 1.07999 * 119.99876 * 174.77602 * 22 21 20 24 24 C 1.38815 * 119.99709 * 354.78872 * 22 21 20 25 25 N 1.31611 * 120.00288 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99451 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47532 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46940 * 119.99714 * 26 24 22 29 29 H 1.48500 * 109.46694 * 239.99343 * 26 24 22 30 30 O 1.43748 * 107.41904 * 1.95123 * 10 9 8 31 31 H 1.09000 * 109.46672 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47112 * 300.00181 * 1 2 3 33 33 H 1.08994 * 109.46740 * 60.00084 * 1 2 3 34 34 H 1.09000 * 109.46757 * 270.00367 * 3 2 1 35 35 H 1.09005 * 109.46636 * 29.99709 * 3 2 1 36 36 H 1.08992 * 109.47268 * 149.99569 * 3 2 1 37 37 H 1.09007 * 110.90432 * 86.27335 * 8 6 4 38 38 H 1.08998 * 110.93495 * 322.68689 * 8 6 4 39 39 H 1.09001 * 110.48617 * 262.20518 * 9 8 6 40 40 H 1.08996 * 110.59842 * 139.61617 * 9 8 6 41 41 H 1.08998 * 109.47065 * 89.99654 * 15 14 12 42 42 H 1.08993 * 109.47104 * 209.99814 * 15 14 12 43 43 H 1.09000 * 109.47016 * 330.00215 * 15 14 12 44 44 H 1.09002 * 109.46827 * 213.96381 * 16 14 12 45 45 H 1.08997 * 109.46832 * 333.95715 * 16 14 12 46 46 H 1.09003 * 113.74028 * 252.25321 * 19 17 16 47 47 H 1.09002 * 113.74638 * 23.56133 * 19 17 16 48 48 H 1.09001 * 113.76944 * 90.69131 * 20 19 17 49 49 H 1.08998 * 113.76992 * 222.09425 * 20 19 17 50 50 H 0.97005 * 120.00247 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6460 -1.1672 -0.0001 7 1 4.0289 -0.6240 0.8639 8 6 4.1913 -0.5549 -1.3154 9 6 5.5949 -1.2002 -1.4160 10 6 5.4997 -2.4527 -0.5233 11 1 6.2033 -2.3717 0.3052 12 6 5.8043 -3.6850 -1.3354 13 8 4.9408 -4.5154 -1.5244 14 7 7.0378 -3.8671 -1.8470 15 6 8.0515 -2.8188 -1.7055 16 6 7.3650 -5.1131 -2.5446 17 6 7.1417 -4.9301 -4.0471 18 1 6.0952 -4.7677 -4.3048 19 6 8.1051 -3.9221 -4.6993 20 6 8.2135 -4.9282 -5.8594 21 7 7.8094 -5.9522 -4.8764 22 6 7.9838 -7.3066 -4.7747 23 1 7.6511 -7.8289 -3.8899 24 6 8.5885 -8.0080 -5.8087 25 7 8.9937 -7.3715 -6.8871 26 14 8.8270 -9.8556 -5.6696 27 1 8.2897 -10.3275 -4.3682 28 1 8.1065 -10.5325 -6.7778 29 1 10.2748 -10.1753 -5.7523 30 8 4.1556 -2.5200 -0.0182 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.3792 1.5834 -1.0277 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5139 37 1 4.2663 0.5298 -1.2377 38 1 3.5703 -0.8402 -2.1646 39 1 6.3562 -0.5184 -1.0367 40 1 5.8148 -1.4814 -2.4458 41 1 8.6097 -2.9754 -0.7825 42 1 8.7345 -2.8570 -2.5541 43 1 7.5645 -1.8442 -1.6747 44 1 8.4084 -5.3691 -2.3608 45 1 6.7241 -5.9144 -2.1769 46 1 7.6323 -2.9803 -4.9779 47 1 9.0359 -3.7851 -4.1488 48 1 7.4819 -4.7664 -6.6511 49 1 9.2282 -5.0570 -6.2359 50 1 9.4166 -7.8616 -7.6095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085817556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:01 Heat of formation + Delta-G solvation = -60.109524 kcal Electronic energy + Delta-G solvation = -30694.184519 eV Core-core repulsion = 26530.501284 eV Total energy + Delta-G solvation = -4163.683236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.91201 -40.93848 -39.80893 -38.90886 -36.68531 -36.53229 -34.28300 -33.30030 -32.01059 -29.88880 -29.81170 -28.64356 -27.69119 -27.08451 -25.34987 -24.95060 -23.66470 -22.90566 -21.05042 -20.68518 -20.24090 -18.79845 -18.59158 -17.88235 -17.74103 -17.36434 -17.15327 -16.94333 -16.50983 -16.30607 -15.89695 -15.80891 -15.38023 -15.02831 -14.73161 -14.61396 -14.27332 -14.12256 -13.94312 -13.85895 -13.64248 -13.39233 -13.35665 -13.28184 -13.12423 -13.01902 -12.94184 -12.69689 -12.57883 -12.39029 -12.25704 -12.17350 -11.95554 -11.84891 -11.55571 -11.39309 -11.28814 -10.89035 -10.83118 -10.46450 -9.73062 -9.65555 -8.92255 -7.94094 -5.26645 1.40940 1.42915 1.44235 1.52806 1.53781 1.61078 1.97957 2.45539 2.91264 3.21911 3.26606 3.36638 3.48382 3.68813 3.76469 3.85333 3.95420 4.02715 4.17030 4.23582 4.29120 4.33216 4.40937 4.45772 4.53011 4.53363 4.58112 4.71295 4.77100 4.78963 4.84025 4.88841 4.91028 4.94500 4.96556 5.01919 5.04491 5.06230 5.09761 5.20513 5.40177 5.46572 5.55104 5.65783 5.72345 5.93164 6.25790 6.43720 6.91578 7.07549 7.18117 7.58271 8.54692 9.23410 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002346 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.117942 B =11932.780661 C =12314.065320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.062 3.938 4 C 0.503 3.497 5 O -0.586 6.586 6 C 0.054 3.946 7 H 0.145 0.855 8 C -0.135 4.135 9 C -0.141 4.141 10 C 0.063 3.937 11 H 0.137 0.863 12 C 0.494 3.506 13 O -0.588 6.588 14 N -0.598 5.598 15 C 0.051 3.949 16 C 0.134 3.866 17 C 0.128 3.872 18 H 0.016 0.984 19 C -0.117 4.117 20 C 0.155 3.845 21 N -0.631 5.631 22 C -0.232 4.232 23 H 0.074 0.926 24 C -0.065 4.065 25 N -0.951 5.951 26 Si 0.974 3.026 27 H -0.271 1.271 28 H -0.294 1.294 29 H -0.284 1.284 30 O -0.372 6.372 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.154 0.846 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.007 0.993 49 H 0.045 0.955 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 30.821 17.360 35.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.079 4.079 4 C 0.291 3.709 5 O -0.465 6.465 6 C -0.006 4.006 7 H 0.162 0.838 8 C -0.172 4.172 9 C -0.178 4.178 10 C 0.002 3.998 11 H 0.154 0.846 12 C 0.283 3.717 13 O -0.467 6.467 14 N -0.332 5.332 15 C -0.089 4.089 16 C 0.009 3.991 17 C 0.021 3.979 18 H 0.034 0.966 19 C -0.154 4.154 20 C 0.030 3.970 21 N -0.358 5.358 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.802 3.198 27 H -0.196 1.196 28 H -0.221 1.221 29 H -0.210 1.210 30 O -0.290 6.290 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.165 0.835 38 H 0.073 0.927 39 H 0.171 0.829 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.120 0.880 48 H 0.025 0.975 49 H 0.063 0.937 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.841 29.368 17.244 34.553 hybrid contribution -0.510 -2.113 -0.727 2.292 sum -6.350 27.254 16.517 32.495 Atomic orbital electron populations 1.21800 0.78632 1.02866 1.03438 1.47799 1.07721 1.06603 1.72780 1.22349 0.98275 0.83311 1.03992 1.20952 0.90589 0.83669 0.75699 1.90742 1.71068 1.33688 1.51046 1.23413 0.90151 0.84548 1.02478 0.83770 1.23256 0.95467 1.03965 0.94525 1.23193 0.99425 0.94400 1.00762 1.22956 0.86158 0.93030 0.97635 0.84573 1.21485 0.81793 0.88563 0.79883 1.90741 1.47593 1.47448 1.60963 1.47778 1.12078 1.18548 1.54775 1.22585 0.91597 0.90606 1.04134 1.21290 1.00625 0.85818 0.91334 1.22578 0.94447 0.89122 0.91777 0.96602 1.23567 0.99232 0.96022 0.96623 1.22130 0.97544 0.85647 0.91723 1.46548 1.62039 1.02628 1.24543 1.19365 1.32401 0.83028 1.01242 0.90828 1.25589 1.02089 1.02195 0.95891 1.69999 1.46444 1.35587 1.07983 0.85077 0.77322 0.80054 0.77306 1.19580 1.22120 1.21019 1.89182 1.28116 1.26903 1.84801 0.92965 0.89534 0.90189 0.90456 0.88531 0.88577 0.83474 0.92741 0.82852 0.90091 0.90183 0.89644 0.87115 0.89157 0.94318 0.89551 0.88047 0.97487 0.93671 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.69 127.77 1.37 2.36 16 2 N -0.61 -8.71 3.27 -871.89 -2.85 -11.56 16 3 C 0.06 0.13 9.03 127.77 1.15 1.29 16 4 C 0.50 12.19 7.12 87.66 0.62 12.81 16 5 O -0.59 -22.47 15.90 15.15 0.24 -22.23 16 6 C 0.05 0.94 2.81 30.53 0.09 1.02 16 7 H 0.15 1.09 7.32 -2.39 -0.02 1.08 16 8 C -0.13 -1.43 5.78 31.90 0.18 -1.24 16 9 C -0.14 -1.42 4.64 31.58 0.15 -1.28 16 10 C 0.06 1.30 3.11 30.22 0.09 1.40 16 11 H 0.14 1.72 8.07 -2.39 -0.02 1.70 16 12 C 0.49 16.26 6.88 87.66 0.60 16.86 16 13 O -0.59 -28.09 16.09 15.68 0.25 -27.84 16 14 N -0.60 -16.77 2.84 -846.77 -2.40 -19.17 16 15 C 0.05 0.73 9.75 127.77 1.25 1.98 16 16 C 0.13 5.11 5.40 86.38 0.47 5.58 16 17 C 0.13 5.55 4.58 45.09 0.21 5.75 16 18 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 19 C -0.12 -4.05 6.69 31.25 0.21 -3.84 16 20 C 0.15 7.51 7.39 86.48 0.64 8.15 16 21 N -0.63 -33.95 3.57 -694.16 -2.48 -36.43 16 22 C -0.23 -13.75 10.51 84.03 0.88 -12.87 16 23 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.95 -59.08 11.52 21.65 0.25 -58.83 16 26 Si 0.97 48.08 29.55 68.60 2.03 50.11 16 27 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 30 O -0.37 -11.03 10.04 -121.20 -1.22 -12.24 16 31 H 0.05 1.09 6.90 -2.39 -0.02 1.08 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 -0.01 7.70 -2.39 -0.02 -0.03 16 35 H 0.10 -0.14 8.07 -2.38 -0.02 -0.16 16 36 H 0.10 -0.20 6.02 -2.39 -0.01 -0.21 16 37 H 0.15 -0.03 6.53 -2.38 -0.02 -0.04 16 38 H 0.05 0.94 8.05 -2.39 -0.02 0.93 16 39 H 0.15 -0.19 7.58 -2.39 -0.02 -0.21 16 40 H 0.08 1.09 7.16 -2.39 -0.02 1.07 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 1.25 5.59 -2.39 -0.01 1.23 16 43 H 0.11 0.76 4.18 -2.39 -0.01 0.75 16 44 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 45 H 0.04 1.77 7.37 -2.39 -0.02 1.75 16 46 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.10 3.01 6.64 -2.39 -0.02 2.99 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.04 2.37 7.40 -2.39 -0.02 2.35 16 50 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -103.92 391.65 3.13 -100.79 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 0.94 Total: 2.81 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: 8.37 Total: 34.60 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -7.49 Total: -126.00 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -0.72 Total: -62.31 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -103.92 3.13 -100.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085817556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.676 kcal (2) G-P(sol) polarization free energy of solvation -103.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds