Wall clock time and date at job start Tue Mar 31 2020 23:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99803 * 2 1 4 4 C 1.53004 * 112.84861 * 303.44497 * 3 2 1 5 5 C 1.50703 * 109.46854 * 300.13061 * 4 3 2 6 6 O 1.21284 * 119.99918 * 354.78873 * 5 4 3 7 7 N 1.34774 * 119.99776 * 174.78081 * 5 4 3 8 8 C 1.47079 * 120.88243 * 359.72882 * 7 5 4 9 9 C 1.53698 * 108.27706 * 128.74975 * 8 7 5 10 10 N 1.46897 * 109.25584 * 54.08371 * 9 8 7 11 11 C 1.46903 * 110.99860 * 172.60512 * 10 9 8 12 12 C 1.50702 * 109.47082 * 59.08871 * 11 10 9 13 13 O 1.21293 * 119.99699 * 5.60708 * 12 11 10 14 14 N 1.34775 * 120.00046 * 185.60125 * 12 11 10 15 15 C 1.37092 * 120.00377 * 179.97438 * 14 12 11 16 16 H 1.08009 * 119.99480 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00787 * 180.02562 * 15 14 12 18 18 N 1.31403 * 120.00509 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99375 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46913 * 90.00373 * 19 17 15 21 21 H 1.48496 * 109.47251 * 210.00052 * 19 17 15 22 22 H 1.48501 * 109.47498 * 330.00533 * 19 17 15 23 23 C 1.46901 * 111.27047 * 296.75354 * 10 9 8 24 24 C 1.47081 * 120.88061 * 180.02562 * 7 5 4 25 25 C 1.53777 * 113.61162 * 172.25087 * 3 2 1 26 26 C 1.53960 * 87.01911 * 220.04705 * 25 3 2 27 27 C 1.53777 * 113.61600 * 74.64005 * 3 2 1 28 28 H 1.09003 * 109.47434 * 55.56748 * 1 2 3 29 29 H 1.09005 * 109.47158 * 175.56895 * 1 2 3 30 30 H 1.09001 * 109.47188 * 295.56705 * 1 2 3 31 31 H 1.08991 * 109.47238 * 60.13346 * 4 3 2 32 32 H 1.08997 * 109.46925 * 180.13432 * 4 3 2 33 33 H 1.08994 * 109.62830 * 248.51670 * 8 7 5 34 34 H 1.09006 * 109.62584 * 9.09990 * 8 7 5 35 35 H 1.09002 * 109.64882 * 294.07777 * 9 8 7 36 36 H 1.09003 * 109.42233 * 173.94622 * 9 8 7 37 37 H 1.09004 * 109.46907 * 179.08644 * 11 10 9 38 38 H 1.09002 * 109.47357 * 299.08671 * 11 10 9 39 39 H 0.97005 * 120.00079 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00577 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.49252 * 303.14908 * 23 10 9 42 42 H 1.08995 * 109.49274 * 183.06156 * 23 10 9 43 43 H 1.09000 * 109.62729 * 350.90274 * 24 7 5 44 44 H 1.09002 * 109.62879 * 111.48109 * 24 7 5 45 45 H 1.08997 * 113.61468 * 334.56006 * 25 3 2 46 46 H 1.08997 * 113.61725 * 105.46780 * 25 3 2 47 47 H 1.09006 * 113.53552 * 270.81400 * 26 25 3 48 48 H 1.08996 * 113.74458 * 139.94543 * 26 25 3 49 49 H 1.08998 * 113.61403 * 254.52991 * 27 3 2 50 50 H 1.09001 * 113.61842 * 25.34880 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5419 2.1643 -1.1765 5 6 1.9182 1.4908 -2.4711 6 8 2.5850 0.4778 -2.4562 7 7 1.5135 2.0140 -3.6453 8 6 0.6991 3.2381 -3.6857 9 6 1.3627 4.2267 -4.6576 10 7 1.5605 3.5700 -5.9566 11 6 2.0302 4.5292 -6.9653 12 6 3.3298 5.1412 -6.5097 13 8 3.8688 4.7386 -5.5005 14 7 3.8932 6.1358 -7.2238 15 6 5.0752 6.6929 -6.8092 16 1 5.5551 6.3345 -5.9104 17 6 5.6558 7.7187 -7.5450 18 7 6.7889 8.2524 -7.1478 19 14 4.8260 8.3380 -9.0998 20 1 3.8967 9.4447 -8.7577 21 1 5.8566 8.8323 -10.0477 22 1 4.0648 7.2295 -9.7299 23 6 2.4821 2.4316 -5.8433 24 6 1.8691 1.3725 -4.9202 25 6 3.5362 1.3003 0.1900 26 6 3.3467 2.5301 1.0968 27 6 1.9198 2.0200 1.3587 28 1 -0.3634 0.5811 -0.8476 29 1 -0.3634 -1.0246 -0.0794 30 1 -0.3633 0.4435 0.9270 31 1 0.4596 2.2844 -1.1306 32 1 2.0186 3.1431 -1.1242 33 1 -0.3059 2.9980 -4.0323 34 1 0.6506 3.6786 -2.6897 35 1 2.3269 4.5417 -4.2586 36 1 0.7192 5.0974 -4.7845 37 1 2.1841 4.0134 -7.9132 38 1 1.2849 5.3139 -7.0954 39 1 3.4619 6.4579 -8.0308 40 1 7.1944 8.9682 -7.6617 41 1 3.4306 2.7715 -5.4278 42 1 2.6504 2.0003 -6.8301 43 1 2.5944 0.5789 -4.7409 44 1 0.9741 0.9568 -5.3831 45 1 3.9075 0.4219 0.7177 46 1 4.0907 1.5120 -0.7242 47 1 3.3799 3.4772 0.5582 48 1 3.9820 2.5243 1.9825 49 1 1.1713 2.8119 1.3866 50 1 1.8469 1.3388 2.2064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112812344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:19 Heat of formation + Delta-G solvation = -66.667577 kcal Electronic energy + Delta-G solvation = -31095.189407 eV Core-core repulsion = 26931.221793 eV Total energy + Delta-G solvation = -4163.967614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.78088 -39.67576 -38.62888 -36.95333 -35.95126 -34.54396 -33.73095 -31.82023 -31.46470 -29.98428 -28.60784 -27.23369 -25.80743 -25.64564 -23.93465 -23.70530 -23.11348 -21.19447 -19.62022 -19.30732 -18.71135 -18.23428 -17.19842 -17.02531 -16.11685 -15.99407 -15.55037 -15.32572 -15.13662 -15.05240 -14.91059 -14.63721 -14.50419 -14.19793 -13.98510 -13.54791 -13.30056 -13.23646 -13.02963 -12.51136 -12.42283 -12.31934 -12.26428 -12.03636 -11.77321 -11.60125 -11.47623 -11.37759 -11.10540 -11.09455 -10.90825 -10.85323 -10.78281 -10.66952 -10.36391 -10.09819 -9.74519 -9.61088 -9.45720 -9.42363 -8.59504 -8.28042 -7.60484 -6.41717 -3.93341 2.73332 2.95243 2.98576 2.99471 3.08650 3.57017 3.69274 4.01034 4.13234 4.23821 4.39225 4.41435 4.56479 4.64242 4.72180 4.98144 5.06510 5.07434 5.14130 5.17785 5.18787 5.25747 5.30809 5.32202 5.41962 5.49885 5.55484 5.56173 5.59627 5.62712 5.73553 5.74723 5.79323 5.82492 5.83804 5.97683 6.02690 6.05496 6.19487 6.38595 6.52056 6.59100 7.07174 7.16782 7.21805 7.45167 7.50431 8.03918 8.28937 8.46560 8.83583 9.31073 9.68842 10.70990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002656 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.243043 B =10539.418701 C =11461.404054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.108 3.892 4 C -0.151 4.151 5 C 0.518 3.482 6 O -0.524 6.524 7 N -0.612 5.612 8 C 0.115 3.885 9 C 0.021 3.979 10 N -0.512 5.512 11 C 0.039 3.961 12 C 0.413 3.587 13 O -0.576 6.576 14 N -0.582 5.582 15 C -0.309 4.309 16 H 0.119 0.881 17 C 0.043 3.957 18 N -0.877 5.877 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.268 1.268 23 C 0.024 3.976 24 C 0.123 3.877 25 C -0.112 4.112 26 C -0.144 4.144 27 C -0.159 4.159 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.371 0.629 40 H 0.275 0.725 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -9.887 9.787 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.274 6.274 3 C 0.068 3.932 4 C -0.191 4.191 5 C 0.305 3.695 6 O -0.400 6.400 7 N -0.346 5.346 8 C -0.008 4.008 9 C -0.108 4.108 10 N -0.235 5.235 11 C -0.093 4.093 12 C 0.199 3.801 13 O -0.461 6.461 14 N -0.220 5.220 15 C -0.438 4.438 16 H 0.136 0.864 17 C -0.161 4.161 18 N -0.516 5.516 19 Si 0.707 3.293 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.104 4.104 24 C 0.000 4.000 25 C -0.149 4.149 26 C -0.182 4.182 27 C -0.197 4.197 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.204 0.796 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.720 -10.905 10.284 21.721 hybrid contribution -0.073 1.455 -1.256 1.924 sum -15.793 -9.450 9.028 20.499 Atomic orbital electron populations 1.22679 0.82289 1.02408 0.99489 1.88065 1.18608 1.26280 1.94474 1.22629 0.95385 0.83196 0.92022 1.22035 1.03250 1.00985 0.92855 1.20299 0.79783 0.84719 0.84654 1.90716 1.38091 1.24380 1.86811 1.48131 1.53279 1.27183 1.06026 1.21925 0.94337 0.84691 0.99843 1.22791 1.02402 0.95763 0.89806 1.62447 1.45527 1.08240 1.07314 1.22110 0.94728 0.96094 0.96371 1.21028 0.88625 0.83693 0.86786 1.90466 1.65250 1.63659 1.26742 1.42403 1.22509 1.32925 1.24139 1.19442 0.97344 1.15495 1.11486 0.86376 1.25083 0.96008 0.96701 0.98289 1.69618 1.17094 1.25504 1.39406 0.86661 0.79860 0.79639 0.83188 1.19536 1.20079 1.19377 1.22702 0.96905 0.91193 0.99641 1.21661 1.00318 0.95503 0.82525 1.22992 0.93324 0.98167 1.00407 1.22801 0.96650 0.98276 1.00424 1.23580 0.97992 1.00292 0.97844 0.94409 0.89982 0.94304 0.88765 0.87415 0.91123 0.90041 0.89921 0.90509 0.89011 0.89162 0.79577 0.91469 0.90134 0.90542 0.89049 0.91593 0.89189 0.90268 0.89765 0.90651 0.91264 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.58 101.05 1.07 1.34 16 2 O -0.36 -4.67 9.85 -49.63 -0.49 -5.16 16 3 C 0.11 1.24 0.51 -89.81 -0.05 1.19 16 4 C -0.15 -1.66 2.97 -27.88 -0.08 -1.75 16 5 C 0.52 7.52 7.36 -10.99 -0.08 7.44 16 6 O -0.52 -9.42 14.06 -8.84 -0.12 -9.54 16 7 N -0.61 -8.37 3.00 -172.15 -0.52 -8.89 16 8 C 0.12 1.31 6.49 -3.36 -0.02 1.29 16 9 C 0.02 0.30 5.13 -3.46 -0.02 0.28 16 10 N -0.51 -7.53 4.83 -235.43 -1.14 -8.66 16 11 C 0.04 0.60 5.84 -4.97 -0.03 0.57 16 12 C 0.41 8.66 7.18 -10.99 -0.08 8.58 16 13 O -0.58 -14.09 11.25 5.55 0.06 -14.03 16 14 N -0.58 -13.17 5.09 -10.96 -0.06 -13.23 16 15 C -0.31 -8.44 10.16 -14.94 -0.15 -8.59 16 16 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.10 13.96 55.50 0.77 -24.32 16 19 Si 0.88 18.77 27.74 -169.99 -4.71 14.06 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 23 C 0.02 0.37 5.21 -3.68 -0.02 0.35 16 24 C 0.12 1.72 6.60 -3.58 -0.02 1.69 16 25 C -0.11 -1.35 6.93 -25.83 -0.18 -1.53 16 26 C -0.14 -1.37 7.74 -25.82 -0.20 -1.57 16 27 C -0.16 -1.43 7.12 -25.92 -0.18 -1.61 16 28 H 0.04 0.35 6.42 -51.93 -0.33 0.01 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.30 7.95 -51.93 -0.41 -0.11 16 31 H 0.09 0.82 6.32 -51.93 -0.33 0.49 16 32 H 0.11 1.10 7.07 -51.93 -0.37 0.73 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.75 6.04 -51.93 -0.31 0.44 16 35 H 0.08 1.52 5.69 -51.93 -0.30 1.22 16 36 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.08 1.59 5.78 -51.93 -0.30 1.29 16 42 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 43 H 0.09 1.38 7.06 -51.93 -0.37 1.02 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 1.12 7.43 -51.93 -0.39 0.74 16 47 H 0.08 0.78 7.60 -51.93 -0.39 0.39 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -33.61 383.97 -8.48 -42.09 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.93 Total: 13.14 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.14 Total: 8.74 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.93 Total: -55.10 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.55 Total: -28.72 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.61 -8.48 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds