Wall clock time and date at job start Tue Mar 31 2020 23:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99803 * 2 1 4 4 C 1.53004 * 112.84861 * 303.44497 * 3 2 1 5 5 C 1.50703 * 109.46854 * 300.13061 * 4 3 2 6 6 O 1.21284 * 119.99918 * 354.78873 * 5 4 3 7 7 N 1.34774 * 119.99776 * 174.78081 * 5 4 3 8 8 C 1.47079 * 120.88243 * 359.72882 * 7 5 4 9 9 C 1.53698 * 108.27706 * 128.74975 * 8 7 5 10 10 N 1.46897 * 109.25584 * 54.08371 * 9 8 7 11 11 C 1.46903 * 110.99860 * 172.60512 * 10 9 8 12 12 C 1.50702 * 109.47082 * 59.08871 * 11 10 9 13 13 O 1.21293 * 119.99699 * 5.60708 * 12 11 10 14 14 N 1.34775 * 120.00046 * 185.60125 * 12 11 10 15 15 C 1.37092 * 120.00377 * 179.97438 * 14 12 11 16 16 H 1.08009 * 119.99480 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00787 * 180.02562 * 15 14 12 18 18 N 1.31403 * 120.00509 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99375 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46913 * 90.00373 * 19 17 15 21 21 H 1.48496 * 109.47251 * 210.00052 * 19 17 15 22 22 H 1.48501 * 109.47498 * 330.00533 * 19 17 15 23 23 C 1.46901 * 111.27047 * 296.75354 * 10 9 8 24 24 C 1.47081 * 120.88061 * 180.02562 * 7 5 4 25 25 C 1.53777 * 113.61162 * 172.25087 * 3 2 1 26 26 C 1.53960 * 87.01911 * 220.04705 * 25 3 2 27 27 C 1.53777 * 113.61600 * 74.64005 * 3 2 1 28 28 H 1.09003 * 109.47434 * 55.56748 * 1 2 3 29 29 H 1.09005 * 109.47158 * 175.56895 * 1 2 3 30 30 H 1.09001 * 109.47188 * 295.56705 * 1 2 3 31 31 H 1.08991 * 109.47238 * 60.13346 * 4 3 2 32 32 H 1.08997 * 109.46925 * 180.13432 * 4 3 2 33 33 H 1.08994 * 109.62830 * 248.51670 * 8 7 5 34 34 H 1.09006 * 109.62584 * 9.09990 * 8 7 5 35 35 H 1.09002 * 109.64882 * 294.07777 * 9 8 7 36 36 H 1.09003 * 109.42233 * 173.94622 * 9 8 7 37 37 H 1.09004 * 109.46907 * 179.08644 * 11 10 9 38 38 H 1.09002 * 109.47357 * 299.08671 * 11 10 9 39 39 H 0.97005 * 120.00079 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00577 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.49252 * 303.14908 * 23 10 9 42 42 H 1.08995 * 109.49274 * 183.06156 * 23 10 9 43 43 H 1.09000 * 109.62729 * 350.90274 * 24 7 5 44 44 H 1.09002 * 109.62879 * 111.48109 * 24 7 5 45 45 H 1.08997 * 113.61468 * 334.56006 * 25 3 2 46 46 H 1.08997 * 113.61725 * 105.46780 * 25 3 2 47 47 H 1.09006 * 113.53552 * 270.81400 * 26 25 3 48 48 H 1.08996 * 113.74458 * 139.94543 * 26 25 3 49 49 H 1.08998 * 113.61403 * 254.52991 * 27 3 2 50 50 H 1.09001 * 113.61842 * 25.34880 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5419 2.1643 -1.1765 5 6 1.9182 1.4908 -2.4711 6 8 2.5850 0.4778 -2.4562 7 7 1.5135 2.0140 -3.6453 8 6 0.6991 3.2381 -3.6857 9 6 1.3627 4.2267 -4.6576 10 7 1.5605 3.5700 -5.9566 11 6 2.0302 4.5292 -6.9653 12 6 3.3298 5.1412 -6.5097 13 8 3.8688 4.7386 -5.5005 14 7 3.8932 6.1358 -7.2238 15 6 5.0752 6.6929 -6.8092 16 1 5.5551 6.3345 -5.9104 17 6 5.6558 7.7187 -7.5450 18 7 6.7889 8.2524 -7.1478 19 14 4.8260 8.3380 -9.0998 20 1 3.8967 9.4447 -8.7577 21 1 5.8566 8.8323 -10.0477 22 1 4.0648 7.2295 -9.7299 23 6 2.4821 2.4316 -5.8433 24 6 1.8691 1.3725 -4.9202 25 6 3.5362 1.3003 0.1900 26 6 3.3467 2.5301 1.0968 27 6 1.9198 2.0200 1.3587 28 1 -0.3634 0.5811 -0.8476 29 1 -0.3634 -1.0246 -0.0794 30 1 -0.3633 0.4435 0.9270 31 1 0.4596 2.2844 -1.1306 32 1 2.0186 3.1431 -1.1242 33 1 -0.3059 2.9980 -4.0323 34 1 0.6506 3.6786 -2.6897 35 1 2.3269 4.5417 -4.2586 36 1 0.7192 5.0974 -4.7845 37 1 2.1841 4.0134 -7.9132 38 1 1.2849 5.3139 -7.0954 39 1 3.4619 6.4579 -8.0308 40 1 7.1944 8.9682 -7.6617 41 1 3.4306 2.7715 -5.4278 42 1 2.6504 2.0003 -6.8301 43 1 2.5944 0.5789 -4.7409 44 1 0.9741 0.9568 -5.3831 45 1 3.9075 0.4219 0.7177 46 1 4.0907 1.5120 -0.7242 47 1 3.3799 3.4772 0.5582 48 1 3.9820 2.5243 1.9825 49 1 1.1713 2.8119 1.3866 50 1 1.8469 1.3388 2.2064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112812344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:18 Heat of formation + Delta-G solvation = -92.763581 kcal Electronic energy + Delta-G solvation = -31096.321015 eV Core-core repulsion = 26931.221793 eV Total energy + Delta-G solvation = -4165.099222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79650 -40.98203 -39.90877 -38.30895 -36.79686 -36.16297 -35.25328 -33.80417 -32.56327 -31.03157 -29.86379 -27.98814 -27.31218 -26.55047 -25.30789 -24.86833 -24.09973 -22.36866 -21.35142 -20.62069 -19.97904 -19.53180 -18.28591 -17.98835 -17.76752 -17.00089 -16.84042 -16.60171 -16.26940 -16.16116 -15.93738 -15.81468 -15.68874 -15.54910 -15.41112 -14.97161 -14.58581 -14.40155 -14.22117 -14.09014 -13.48240 -13.41933 -13.24287 -13.07399 -13.03043 -12.83970 -12.72724 -12.44857 -12.32843 -12.21642 -12.10395 -12.06312 -12.00962 -11.88660 -11.71944 -11.41367 -11.19196 -11.06891 -10.79862 -10.35310 -10.24741 -9.75119 -9.05108 -8.44638 -6.05381 1.29027 1.33631 1.43280 1.62818 1.90105 1.96019 2.20801 2.86924 2.95038 2.95344 3.12797 3.36236 3.51852 3.57962 3.74690 3.86557 3.99187 4.02936 4.17353 4.18221 4.29325 4.35191 4.36479 4.39525 4.50563 4.55192 4.56928 4.59593 4.61135 4.67316 4.72905 4.79452 4.79596 4.82552 4.86748 5.02073 5.04789 5.10228 5.21457 5.27285 5.36880 5.48322 5.50334 5.81877 5.94694 5.97526 6.37159 6.43283 6.54948 6.85737 7.18826 7.36496 7.93261 8.73068 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002656 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.243043 B =10539.418701 C =11461.404054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.388 6.388 3 C 0.101 3.899 4 C -0.145 4.145 5 C 0.509 3.491 6 O -0.569 6.569 7 N -0.616 5.616 8 C 0.118 3.882 9 C 0.019 3.981 10 N -0.495 5.495 11 C 0.047 3.953 12 C 0.416 3.584 13 O -0.615 6.615 14 N -0.587 5.587 15 C -0.327 4.327 16 H 0.051 0.949 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.229 1.229 23 C 0.030 3.970 24 C 0.127 3.873 25 C -0.128 4.128 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.034 0.966 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.093 0.907 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.013 -9.138 8.566 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.307 6.307 3 C 0.061 3.939 4 C -0.185 4.185 5 C 0.298 3.702 6 O -0.448 6.448 7 N -0.350 5.350 8 C -0.004 4.004 9 C -0.110 4.110 10 N -0.217 5.217 11 C -0.085 4.085 12 C 0.203 3.797 13 O -0.501 6.501 14 N -0.229 5.229 15 C -0.457 4.457 16 H 0.069 0.931 17 C -0.215 4.215 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.179 1.179 21 H -0.203 1.203 22 H -0.152 1.152 23 C -0.099 4.099 24 C 0.004 3.996 25 C -0.165 4.165 26 C -0.174 4.174 27 C -0.179 4.179 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.112 0.888 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.501 -10.163 9.070 24.614 hybrid contribution 1.461 1.096 -0.765 1.980 sum -19.040 -9.067 8.304 22.665 Atomic orbital electron populations 1.22855 0.80573 1.03138 1.00777 1.88022 1.20656 1.27285 1.94760 1.22750 0.94298 0.83211 0.93631 1.22081 1.05245 1.00602 0.90573 1.20986 0.78933 0.84343 0.85928 1.90694 1.40021 1.26595 1.87520 1.48312 1.53198 1.27782 1.05681 1.22126 0.94629 0.82977 1.00653 1.22830 1.00730 0.97528 0.89905 1.62562 1.43922 1.07642 1.07605 1.22339 0.91761 0.97067 0.97330 1.22393 0.89793 0.82083 0.85402 1.90503 1.66755 1.64282 1.28531 1.42243 1.21450 1.33801 1.25360 1.18970 0.99553 1.16904 1.10269 0.93087 1.26166 0.96453 0.96171 1.02702 1.69809 1.19463 1.26579 1.41746 0.85353 0.78921 0.80162 0.77008 1.17923 1.20342 1.15239 1.22589 0.94926 0.92021 1.00384 1.21568 1.00727 0.94541 0.82793 1.23051 0.94435 0.99463 0.99587 1.22790 0.97654 0.96926 1.00055 1.23480 0.97798 1.00402 0.96187 0.93937 0.89596 0.92131 0.85514 0.86632 0.88125 0.87584 0.94735 0.88095 0.86213 0.85336 0.77434 0.91161 0.95277 0.89082 0.91169 0.89004 0.89978 0.93685 0.89584 0.89515 0.88803 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.58 113.37 1.20 1.59 16 2 O -0.39 -10.01 9.85 -135.22 -1.33 -11.34 16 3 C 0.10 2.26 0.51 -10.27 -0.01 2.26 16 4 C -0.15 -3.00 2.97 29.85 0.09 -2.91 16 5 C 0.51 14.85 7.36 87.66 0.64 15.49 16 6 O -0.57 -21.54 14.06 10.72 0.15 -21.39 16 7 N -0.62 -16.30 3.00 -816.96 -2.45 -18.76 16 8 C 0.12 2.34 6.49 86.50 0.56 2.90 16 9 C 0.02 0.49 5.13 86.54 0.44 0.94 16 10 N -0.50 -13.28 4.83 -898.78 -4.34 -17.62 16 11 C 0.05 1.28 5.84 85.56 0.50 1.78 16 12 C 0.42 17.39 7.18 87.66 0.63 18.02 16 13 O -0.61 -31.67 11.25 -3.07 -0.03 -31.70 16 14 N -0.59 -26.40 5.09 -306.98 -1.56 -27.97 16 15 C -0.33 -18.76 10.16 84.04 0.85 -17.90 16 16 H 0.05 3.53 7.39 -2.91 -0.02 3.50 16 17 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 18 N -0.94 -56.04 13.96 21.66 0.30 -55.74 16 19 Si 0.97 37.80 27.74 68.60 1.90 39.70 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 23 C 0.03 0.91 5.21 86.40 0.45 1.36 16 24 C 0.13 3.49 6.60 86.36 0.57 4.06 16 25 C -0.13 -3.29 6.93 31.18 0.22 -3.07 16 26 C -0.14 -2.52 7.74 31.18 0.24 -2.28 16 27 C -0.14 -2.22 7.12 31.12 0.22 -2.00 16 28 H 0.04 0.67 6.42 -2.39 -0.02 0.65 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 0.76 7.95 -2.39 -0.02 0.74 16 31 H 0.13 1.75 6.32 -2.39 -0.02 1.74 16 32 H 0.12 2.20 7.07 -2.39 -0.02 2.19 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.58 6.04 -2.38 -0.01 1.56 16 35 H 0.03 1.28 5.69 -2.39 -0.01 1.27 16 36 H 0.10 2.18 8.11 -2.39 -0.02 2.16 16 37 H 0.12 2.74 8.06 -2.38 -0.02 2.72 16 38 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.39 14.38 5.76 -92.70 -0.53 13.85 16 40 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.03 1.21 5.78 -2.39 -0.01 1.20 16 42 H 0.09 2.47 8.05 -2.39 -0.02 2.45 16 43 H 0.07 2.23 7.06 -2.39 -0.02 2.21 16 44 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.42 7.43 -2.39 -0.02 1.41 16 47 H 0.09 1.55 7.60 -2.38 -0.02 1.53 16 48 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 50 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -83.63 383.97 0.08 -83.55 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: 0.36 Total: 41.45 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.08 Total: 19.81 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -8.05 Total: -120.08 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -1.22 Total: -64.43 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Total: -83.63 0.08 -83.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.209 kcal (2) G-P(sol) polarization free energy of solvation -83.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds