Wall clock time and date at job start Tue Mar 31 2020 22:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47017 * 110.99940 * 2 1 4 4 C 1.53101 * 109.25808 * 177.60716 * 3 2 1 5 5 O 1.43009 * 109.25698 * 56.84530 * 4 3 2 6 6 C 1.43021 * 113.78241 * 301.35706 * 5 4 3 7 7 C 1.47011 * 110.99983 * 236.36391 * 2 1 3 8 8 H 1.09001 * 109.50540 * 62.41669 * 7 2 1 9 9 C 1.52991 * 109.50631 * 302.32961 * 7 2 1 10 10 N 1.46501 * 109.47396 * 304.62891 * 9 7 2 11 11 C 1.34775 * 120.00321 * 185.04485 * 10 9 7 12 12 O 1.21345 * 120.00202 * 0.02562 * 11 10 9 13 13 C 1.49449 * 119.99994 * 180.02562 * 11 10 9 14 14 O 1.21354 * 119.99938 * 6.00848 * 13 11 10 15 15 N 1.34772 * 120.00216 * 186.00604 * 13 11 10 16 16 C 1.46928 * 120.62932 * 356.10792 * 15 13 11 17 17 C 1.53195 * 108.77583 * 126.41242 * 16 15 13 18 18 C 1.53040 * 109.31094 * 54.63591 * 17 16 15 19 19 C 1.53038 * 109.53562 * 298.63115 * 18 17 16 20 20 H 1.08996 * 109.52812 * 301.40010 * 19 18 17 21 21 C 1.50707 * 109.49495 * 181.32062 * 19 18 17 22 22 H 1.08001 * 120.00040 * 0.15987 * 21 19 18 23 23 C 1.37875 * 120.00216 * 180.43983 * 21 19 18 24 24 N 1.31523 * 119.99843 * 359.72543 * 23 21 19 25 25 Si 1.86800 * 120.00275 * 179.72416 * 23 21 19 26 26 H 1.48499 * 109.46904 * 89.99977 * 25 23 21 27 27 H 1.48497 * 109.46921 * 210.00127 * 25 23 21 28 28 H 1.48500 * 109.46784 * 329.99969 * 25 23 21 29 29 C 1.46921 * 120.63392 * 176.12887 * 15 13 11 30 30 H 1.08997 * 109.47225 * 188.87952 * 1 2 3 31 31 H 1.09004 * 109.46673 * 308.87905 * 1 2 3 32 32 H 1.09000 * 109.47285 * 68.87604 * 1 2 3 33 33 H 1.08995 * 109.50835 * 297.54486 * 3 2 1 34 34 H 1.09009 * 109.50448 * 57.63048 * 3 2 1 35 35 H 1.09000 * 109.50757 * 176.78690 * 4 3 2 36 36 H 1.09003 * 109.50434 * 296.91617 * 4 3 2 37 37 H 1.08996 * 109.46714 * 298.69278 * 6 5 4 38 38 H 1.08997 * 109.54862 * 178.55331 * 6 5 4 39 39 H 1.09009 * 109.46861 * 184.63504 * 9 7 2 40 40 H 1.09000 * 109.47795 * 64.63232 * 9 7 2 41 41 H 0.97002 * 119.99751 * 5.05306 * 10 9 7 42 42 H 1.08996 * 109.58373 * 246.19920 * 16 15 13 43 43 H 1.09004 * 109.58411 * 6.62380 * 16 15 13 44 44 H 1.09001 * 109.49406 * 174.58869 * 17 16 15 45 45 H 1.09000 * 109.49670 * 294.64729 * 17 16 15 46 46 H 1.09003 * 109.45278 * 178.61674 * 18 17 16 47 47 H 1.08999 * 109.46014 * 58.65371 * 18 17 16 48 48 H 0.96993 * 119.99981 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58889 * 113.79925 * 29 15 13 50 50 H 1.08997 * 109.70443 * 353.44249 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3265 0.0603 5 8 4.0175 0.5574 -1.0402 6 6 3.5250 -0.7850 -1.0720 7 6 1.9959 -0.7602 -1.1427 8 1 1.6821 -0.2847 -2.0720 9 6 1.4589 -2.1920 -1.0949 10 7 1.7881 -2.7941 0.1995 11 6 1.5030 -4.0908 0.4316 12 8 0.9741 -4.7597 -0.4316 13 6 1.8383 -4.7048 1.7523 14 8 2.2662 -4.0122 2.6523 15 7 1.6655 -6.0276 1.9438 16 6 1.0692 -6.8644 0.8935 17 6 2.0092 -8.0395 0.6063 18 6 2.3031 -8.7831 1.9112 19 6 2.9982 -7.8376 2.8936 20 1 3.9211 -7.4648 2.4494 21 6 3.3164 -8.5796 4.1661 22 1 3.0520 -9.6222 4.2638 23 6 3.9397 -7.9260 5.2078 24 7 4.2616 -6.6563 5.0889 25 14 4.3272 -8.8437 6.7881 26 1 5.6783 -9.4519 6.6887 27 1 4.2934 -7.8967 7.9314 28 1 3.3177 -9.9120 7.0002 29 6 2.0694 -6.6602 3.2068 30 1 -0.3633 -1.0153 0.1586 31 1 -0.3633 0.6451 0.8001 32 1 -0.3634 0.3704 -0.9586 33 1 1.6828 1.8826 -0.9109 34 1 1.6127 1.9095 0.8679 35 1 3.9222 2.3399 0.0030 36 1 3.8385 0.8643 0.9965 37 1 3.8392 -1.3086 -0.1692 38 1 3.9216 -1.2983 -1.9480 39 1 1.9138 -2.7775 -1.8941 40 1 0.3768 -2.1789 -1.2248 41 1 2.2112 -2.2595 0.8895 42 1 0.1044 -7.2424 1.2314 43 1 0.9355 -6.2734 -0.0126 44 1 1.5353 -8.7198 -0.1013 45 1 2.9409 -7.6648 0.1825 46 1 2.9522 -9.6343 1.7056 47 1 1.3683 -9.1360 2.3466 48 1 4.7005 -6.1966 5.8216 49 1 1.1861 -7.0216 3.7333 50 1 2.5949 -5.9359 3.8291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119190496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:30 Heat of formation + Delta-G solvation = -86.652022 kcal Electronic energy + Delta-G solvation = -31092.670319 eV Core-core repulsion = 26927.836114 eV Total energy + Delta-G solvation = -4164.834205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71836 -39.96321 -38.22301 -36.83762 -36.42985 -34.81204 -33.22386 -31.81654 -31.57690 -29.71447 -29.24591 -27.28836 -25.56067 -24.94190 -24.53254 -23.28908 -22.29507 -21.77355 -20.32009 -20.08240 -18.81845 -17.32243 -16.90514 -16.83911 -16.50889 -16.08969 -15.79246 -15.42923 -15.34909 -15.19496 -14.88712 -14.52094 -14.35850 -14.09127 -13.95417 -13.74853 -13.29031 -13.04335 -12.84020 -12.75741 -12.56943 -12.47038 -12.27762 -12.08181 -11.83615 -11.72634 -11.43176 -11.38236 -10.97024 -10.88941 -10.67428 -10.42945 -10.25707 -10.04047 -10.00001 -9.84558 -9.21582 -9.18986 -9.09959 -8.82987 -8.47713 -8.37936 -7.79278 -6.00558 -4.08801 1.83526 2.71239 3.30844 3.33812 3.38363 3.40934 3.50346 3.70040 4.03300 4.32589 4.35527 4.43022 4.53190 4.75057 4.77724 4.86560 4.87102 5.10837 5.17210 5.22547 5.29295 5.29850 5.35329 5.43164 5.48088 5.60392 5.64975 5.66738 5.71865 5.88666 6.09148 6.28560 6.40817 6.48542 6.51209 6.62592 6.66632 6.78200 6.80670 6.88772 7.01245 7.08435 7.20993 7.31785 7.61599 7.85167 7.97396 8.04904 8.20380 8.37494 8.62505 8.95200 9.56686 11.04896 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.002822 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.393696 B = 9919.050502 C =10977.680613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.020 3.980 4 C 0.059 3.941 5 O -0.383 6.383 6 C 0.065 3.935 7 C 0.035 3.965 8 H 0.069 0.931 9 C 0.125 3.875 10 N -0.693 5.693 11 C 0.511 3.489 12 O -0.519 6.519 13 C 0.493 3.507 14 O -0.523 6.523 15 N -0.566 5.566 16 C 0.046 3.954 17 C -0.130 4.130 18 C -0.113 4.113 19 C 0.041 3.959 20 H 0.029 0.971 21 C -0.519 4.519 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.882 5.882 25 Si 0.893 3.107 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.108 3.892 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.420 0.580 42 H 0.055 0.945 43 H 0.149 0.851 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.263 0.737 49 H 0.047 0.953 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 15.220 -14.025 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.108 4.108 4 C -0.018 4.018 5 O -0.301 6.301 6 C -0.012 4.012 7 C -0.074 4.074 8 H 0.086 0.914 9 C 0.001 3.999 10 N -0.347 5.347 11 C 0.294 3.706 12 O -0.398 6.398 13 C 0.274 3.726 14 O -0.400 6.400 15 N -0.298 5.298 16 C -0.076 4.076 17 C -0.168 4.168 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.047 0.953 21 C -0.558 4.558 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.520 5.520 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.012 4.012 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.165 0.835 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.363 15.116 -13.739 21.395 hybrid contribution -0.185 -0.034 0.737 0.760 sum -6.547 15.082 -13.002 20.962 Atomic orbital electron populations 1.22454 0.86397 1.03249 1.00532 1.62163 1.08709 1.13641 1.41734 1.22819 0.96628 0.89496 1.01897 1.22726 0.92032 0.96614 0.90419 1.87997 1.69858 1.23769 1.48470 1.22766 0.90853 0.84121 1.03476 1.22662 0.97061 0.94116 0.93545 0.91366 1.21411 1.00926 0.91378 0.86183 1.45744 1.61360 1.10516 1.17102 1.20809 0.78544 0.82381 0.88841 1.90243 1.43275 1.58961 1.47306 1.19737 0.81354 0.83921 0.87554 1.90771 1.45187 1.60732 1.43321 1.48443 1.57221 1.05687 1.18457 1.23210 0.95261 0.94361 0.94739 1.21898 0.99325 0.97010 0.98564 1.21665 1.00076 0.98634 0.94729 1.18962 0.93627 0.91147 0.94052 0.95296 1.21098 1.38929 0.96762 0.98979 0.92283 1.25060 0.95312 0.94940 0.98756 1.69874 1.40567 1.09035 1.32496 0.86572 0.78707 0.79580 0.83024 1.20678 1.21167 1.19912 1.22470 0.97988 0.98436 0.82331 0.90600 0.90960 0.95309 0.93891 0.89259 0.88308 0.91706 0.91554 0.87927 0.89871 0.90735 0.74112 0.92631 0.83543 0.92308 0.92499 0.93144 0.93253 0.92644 0.93466 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.03 60.07 0.54 0.71 16 2 N -0.54 -4.65 4.19 -234.57 -0.98 -5.63 16 3 C 0.02 0.15 5.65 -3.71 -0.02 0.12 16 4 C 0.06 0.48 7.01 37.21 0.26 0.74 16 5 O -0.38 -3.91 10.82 -35.23 -0.38 -4.29 16 6 C 0.07 0.60 6.20 37.21 0.23 0.83 16 7 C 0.04 0.30 2.24 -67.60 -0.15 0.14 16 8 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 9 C 0.13 1.20 4.70 -4.05 -0.02 1.18 16 10 N -0.69 -8.84 5.03 -60.73 -0.31 -9.15 16 11 C 0.51 8.29 7.81 -11.59 -0.09 8.20 16 12 O -0.52 -8.59 13.01 5.50 0.07 -8.52 16 13 C 0.49 10.00 7.76 -11.59 -0.09 9.91 16 14 O -0.52 -12.01 15.92 5.49 0.09 -11.92 16 15 N -0.57 -11.92 2.97 -173.28 -0.51 -12.43 16 16 C 0.05 0.83 6.27 -3.71 -0.02 0.80 16 17 C -0.13 -2.32 6.08 -26.61 -0.16 -2.48 16 18 C -0.11 -2.36 5.11 -26.69 -0.14 -2.49 16 19 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.52 -14.13 8.57 -34.44 -0.30 -14.42 16 22 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.48 11.38 55.43 0.63 -24.85 16 25 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 30 H 0.08 0.66 6.68 -51.93 -0.35 0.31 16 31 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 32 H 0.03 0.19 8.13 -51.93 -0.42 -0.23 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.57 8.10 -51.92 -0.42 0.15 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.70 7.19 -51.93 -0.37 0.32 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.07 0.69 6.76 -51.93 -0.35 0.34 16 41 H 0.42 5.61 6.88 -40.82 -0.28 5.33 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.15 2.55 3.71 -57.18 -0.21 2.34 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.12 3.46 5.14 -51.93 -0.27 3.20 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -31.11 386.08 -9.00 -40.11 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.13 Total: 6.36 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -0.28 Total: 8.30 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -1.17 Total: -52.06 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.22 Total: -24.73 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.11 -9.00 -40.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119190496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.541 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds