Wall clock time and date at job start Tue Mar 31 2020 23:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00183 * 2 1 4 4 C 1.52998 * 109.47075 * 184.25463 * 3 2 1 5 5 C 1.50695 * 115.55348 * 34.44266 * 4 3 2 6 6 O 1.21283 * 119.99980 * 246.05288 * 5 4 3 7 7 N 1.34778 * 119.99990 * 66.04838 * 5 4 3 8 8 C 1.47743 * 121.65201 * 4.87626 * 7 5 4 9 9 C 1.53602 * 108.47810 * 87.79883 * 8 7 5 10 10 C 1.50697 * 109.50087 * 55.01863 * 9 8 7 11 11 O 1.21287 * 120.24194 * 65.67749 * 10 9 8 12 12 N 1.35511 * 119.52236 * 245.65688 * 10 9 8 13 13 C 1.47113 * 118.11025 * 179.91781 * 12 10 9 14 14 C 1.52989 * 109.17681 * 259.43862 * 13 12 10 15 15 N 1.47770 * 108.81958 * 57.74938 * 14 13 12 16 16 C 1.36937 * 121.64830 * 82.98799 * 15 14 13 17 17 H 1.08010 * 119.99809 * 329.79822 * 16 15 14 18 18 C 1.38816 * 120.00514 * 149.80241 * 16 15 14 19 19 N 1.31615 * 119.99397 * 348.57386 * 18 16 15 20 20 Si 1.86796 * 120.00085 * 168.57235 * 18 16 15 21 21 H 1.48500 * 109.47205 * 60.00207 * 20 18 16 22 22 H 1.48500 * 109.46889 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47225 * 300.00200 * 20 18 16 24 24 C 1.47744 * 116.70881 * 263.00497 * 15 14 13 25 25 C 1.47772 * 121.65035 * 185.15268 * 7 5 4 26 26 C 1.53002 * 117.49715 * 248.73430 * 4 3 2 27 27 C 1.53003 * 60.00142 * 252.50884 * 26 4 3 28 28 H 1.09003 * 109.46930 * 295.64705 * 1 2 3 29 29 H 1.08997 * 109.47037 * 55.64597 * 1 2 3 30 30 H 1.09004 * 109.47415 * 175.65130 * 1 2 3 31 31 H 1.08999 * 109.47054 * 64.25263 * 3 2 1 32 32 H 1.09005 * 109.46934 * 304.25243 * 3 2 1 33 33 H 1.09007 * 109.57704 * 207.42438 * 8 7 5 34 34 H 1.08999 * 109.58091 * 327.83769 * 8 7 5 35 35 H 1.09002 * 109.49583 * 294.97862 * 9 8 7 36 36 H 1.09009 * 109.39794 * 174.99549 * 9 8 7 37 37 H 0.96996 * 120.94482 * 359.94782 * 12 10 9 38 38 H 1.08998 * 109.51755 * 139.53205 * 13 12 10 39 39 H 1.09001 * 109.56926 * 19.37681 * 13 12 10 40 40 H 1.09000 * 109.58106 * 297.95427 * 14 13 12 41 41 H 1.08994 * 109.68893 * 177.61405 * 14 13 12 42 42 H 0.97001 * 119.99534 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.57727 * 14.88272 * 24 15 14 44 44 H 1.08996 * 109.57853 * 254.47864 * 24 15 14 45 45 H 1.08994 * 109.58734 * 69.84621 * 25 7 5 46 46 H 1.09006 * 109.58098 * 190.12584 * 25 7 5 47 47 H 1.08998 * 117.50182 * 359.97438 * 26 4 3 48 48 H 1.08996 * 117.49957 * 145.02520 * 26 4 3 49 49 H 1.08996 * 117.50046 * 252.50869 * 27 26 4 50 50 H 1.09002 * 117.49886 * 107.48505 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5318 1.1862 -0.1070 5 6 4.0366 0.0414 -0.9470 6 8 4.6518 -0.8661 -0.4284 7 7 3.8045 0.0261 -2.2746 8 6 3.1532 1.1608 -2.9609 9 6 4.2375 2.1677 -3.3731 10 6 5.2839 1.4687 -4.2022 11 8 4.9997 1.0190 -5.2922 12 7 6.5450 1.3467 -3.7213 13 6 7.5413 0.6572 -4.5557 14 6 7.7151 -0.7761 -4.0498 15 7 6.4040 -1.4568 -4.0861 16 6 5.9206 -2.0244 -5.2347 17 1 6.1888 -1.6108 -6.1958 18 6 5.0859 -3.1313 -5.1640 19 7 4.9376 -3.7718 -4.0238 20 14 4.1732 -3.7117 -6.6870 21 1 5.1523 -4.0678 -7.7452 22 1 3.3538 -4.9031 -6.3490 23 1 3.2876 -2.6252 -7.1774 24 6 5.6401 -1.4943 -2.8220 25 6 4.1834 -1.1290 -3.1147 26 6 4.3594 1.5834 1.1170 27 6 4.3429 2.4834 -0.1202 28 1 -0.3633 0.4448 0.9264 29 1 -0.3633 0.5799 -0.8484 30 1 -0.3634 -1.0247 -0.0779 31 1 1.7502 1.8189 0.9256 32 1 1.6296 1.8726 -0.8495 33 1 2.6321 0.8007 -3.8481 34 1 2.4426 1.6371 -2.2854 35 1 4.7017 2.5880 -2.4810 36 1 3.7846 2.9679 -3.9587 37 1 6.7838 1.7034 -2.8515 38 1 8.4941 1.1830 -4.4946 39 1 7.2008 0.6392 -5.5911 40 1 8.0896 -0.7594 -3.0263 41 1 8.4204 -1.3079 -4.6883 42 1 4.3547 -4.5455 -3.9745 43 1 6.0623 -0.7766 -2.1187 44 1 5.6870 -2.4966 -2.3966 45 1 3.5400 -1.9773 -2.8813 46 1 4.0746 -0.8666 -4.1671 47 1 3.8199 1.9302 1.9984 48 1 5.2691 1.0167 1.3150 49 1 5.2418 2.5087 -0.7361 50 1 3.7925 3.4218 -0.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131369815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:15 Heat of formation + Delta-G solvation = -35.169712 kcal Electronic energy + Delta-G solvation = -33693.302422 eV Core-core repulsion = 29530.700658 eV Total energy + Delta-G solvation = -4162.601764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.28558 -38.94118 -37.70279 -36.37318 -35.64134 -35.22805 -33.64800 -31.25850 -30.33399 -29.28788 -28.31705 -26.62301 -25.68393 -24.78064 -23.53742 -22.92145 -22.65497 -21.07338 -20.12766 -19.71697 -18.16275 -17.16142 -16.53190 -16.45399 -16.18873 -16.10008 -15.58731 -15.18960 -15.01851 -14.78439 -14.46488 -14.18869 -13.69201 -13.50722 -13.28582 -13.21241 -13.13957 -12.83319 -12.73455 -12.43071 -12.14441 -11.94883 -11.74624 -11.58922 -11.44669 -11.22910 -11.10844 -11.02914 -10.70585 -10.62048 -10.45629 -10.40116 -10.14915 -9.90768 -9.77241 -9.66850 -9.56478 -9.07614 -8.94840 -8.63711 -8.23105 -7.91174 -6.39926 -5.49610 -3.05368 3.02598 3.30545 3.38615 3.50173 3.54832 3.57939 3.61151 3.80292 3.90082 4.58675 4.63364 4.65950 4.75352 4.91098 5.02273 5.14137 5.19769 5.21582 5.24598 5.36626 5.40604 5.45903 5.53879 5.58763 5.61678 5.62425 5.72457 5.75288 5.83200 5.96889 6.04033 6.10272 6.19570 6.28006 6.61569 6.70395 6.73000 6.84714 7.05958 7.07038 7.14958 7.20168 7.64051 7.92335 8.04160 8.14307 8.25505 8.57843 8.84486 8.97078 9.39900 9.99568 10.62366 11.48883 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.005431 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.196355 B = 5154.565525 C = 6128.892352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.104 3.896 4 C -0.157 4.157 5 C 0.561 3.439 6 O -0.525 6.525 7 N -0.607 5.607 8 C 0.118 3.882 9 C -0.163 4.163 10 C 0.521 3.479 11 O -0.518 6.518 12 N -0.722 5.722 13 C 0.089 3.911 14 C 0.127 3.873 15 N -0.587 5.587 16 C -0.224 4.224 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.899 5.899 20 Si 0.895 3.105 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.175 3.825 25 C 0.118 3.882 26 C -0.141 4.141 27 C -0.158 4.158 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.389 0.611 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.251 0.749 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 17.382 9.106 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C 0.027 3.973 4 C -0.161 4.161 5 C 0.347 3.653 6 O -0.401 6.401 7 N -0.340 5.340 8 C -0.007 4.007 9 C -0.205 4.205 10 C 0.306 3.694 11 O -0.392 6.392 12 N -0.374 5.374 13 C -0.038 4.038 14 C -0.002 4.002 15 N -0.310 5.310 16 C -0.355 4.355 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.544 5.544 20 Si 0.725 3.275 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.212 1.212 24 C 0.050 3.950 25 C -0.003 4.003 26 C -0.178 4.178 27 C -0.195 4.195 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.221 0.779 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.527 16.166 8.605 18.865 hybrid contribution -0.888 0.109 -0.377 0.971 sum -5.415 16.275 8.228 19.024 Atomic orbital electron populations 1.22744 0.80985 1.03079 0.99570 1.88056 1.19509 1.26662 1.95230 1.21985 0.89631 0.85538 1.00098 1.21468 0.93453 0.97619 1.03534 1.18846 0.79352 0.85701 0.81392 1.90712 1.40364 1.37262 1.71743 1.48937 1.59253 1.19142 1.06715 1.21856 0.93522 0.87320 0.97967 1.22418 0.97748 0.99580 1.00741 1.20278 0.82949 0.79397 0.86749 1.90740 1.79550 1.47266 1.21637 1.46008 1.10724 1.59520 1.21129 1.22301 0.89362 0.95088 0.97034 1.21436 0.89600 0.91149 0.97966 1.44508 1.14624 1.63895 1.08021 1.18819 1.25674 1.05493 0.85477 0.92155 1.25089 1.02129 0.96168 0.96309 1.70002 1.40165 1.20243 1.24009 0.86480 0.79926 0.77768 0.83315 1.21111 1.21930 1.21157 1.21198 0.88301 0.99314 0.86212 1.22628 0.98563 0.84659 0.94438 1.23056 1.02145 1.01277 0.91368 1.23128 1.01512 0.92940 1.01923 0.94287 0.94048 0.89468 0.92654 0.92394 0.89602 0.90398 0.90376 0.88499 0.77868 0.93000 0.89679 0.94358 0.93108 0.93914 0.95447 0.92005 0.92544 0.88114 0.88130 0.87541 0.87961 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.47 9.96 -35.23 -0.35 -5.82 16 3 C 0.10 1.17 5.49 37.16 0.20 1.38 16 4 C -0.16 -2.03 1.40 -155.66 -0.22 -2.25 16 5 C 0.56 10.28 5.69 -10.99 -0.06 10.22 16 6 O -0.53 -12.04 14.83 5.55 0.08 -11.96 16 7 N -0.61 -11.20 2.42 -171.28 -0.41 -11.62 16 8 C 0.12 1.71 5.53 -3.05 -0.02 1.69 16 9 C -0.16 -2.10 6.19 -27.57 -0.17 -2.27 16 10 C 0.52 9.08 4.75 -10.65 -0.05 9.03 16 11 O -0.52 -11.47 15.08 5.55 0.08 -11.39 16 12 N -0.72 -11.48 4.70 -59.69 -0.28 -11.77 16 13 C 0.09 1.54 6.57 -3.71 -0.02 1.51 16 14 C 0.13 2.61 6.09 -3.35 -0.02 2.59 16 15 N -0.59 -14.67 2.27 -171.21 -0.39 -15.06 16 16 C -0.22 -6.22 8.34 -15.06 -0.13 -6.35 16 17 H 0.06 1.73 7.86 -52.48 -0.41 1.31 16 18 C 0.00 0.04 4.45 -17.43 -0.08 -0.04 16 19 N -0.90 -26.74 10.18 55.49 0.56 -26.18 16 20 Si 0.89 22.87 29.57 -169.99 -5.03 17.84 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 24 C 0.17 4.38 3.58 -3.36 -0.01 4.36 16 25 C 0.12 2.79 3.90 -3.34 -0.01 2.78 16 26 C -0.14 -1.55 9.70 -26.73 -0.26 -1.81 16 27 C -0.16 -1.44 8.59 -26.73 -0.23 -1.67 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.37 8.13 -51.93 -0.42 -0.06 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 32 H 0.06 0.54 6.07 -51.93 -0.32 0.23 16 33 H 0.09 1.37 7.80 -51.92 -0.41 0.97 16 34 H 0.08 0.89 4.58 -51.93 -0.24 0.66 16 35 H 0.08 0.81 4.86 -51.93 -0.25 0.56 16 36 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.39 5.13 8.71 -40.82 -0.36 4.78 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.72 7.01 -51.93 -0.36 1.36 16 40 H 0.04 0.75 7.76 -51.93 -0.40 0.35 16 41 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.66 5.76 -51.93 -0.30 0.36 16 44 H 0.06 1.86 6.70 -51.93 -0.35 1.51 16 45 H 0.06 1.53 7.67 -51.93 -0.40 1.13 16 46 H 0.10 2.62 4.68 -51.93 -0.24 2.38 16 47 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 48 H 0.11 1.35 8.01 -51.93 -0.42 0.93 16 49 H 0.10 0.95 6.71 -51.93 -0.35 0.60 16 50 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -36.00 377.04 -7.73 -43.73 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.72 Total: 5.91 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 0.04 Total: 20.62 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.52 Total: -64.61 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.18 Total: -29.17 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.00 -7.73 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131369815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.559 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds