Wall clock time and date at job start Tue Mar 31 2020 22:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00044 * 2 1 4 4 C 1.53002 * 109.46934 * 270.00014 * 3 2 1 5 5 H 1.09002 * 112.95722 * 287.13997 * 4 3 2 6 6 C 1.53934 * 113.75755 * 155.49468 * 4 3 2 7 7 C 1.53937 * 86.34107 * 221.96015 * 6 4 3 8 8 N 1.47954 * 113.76111 * 58.93289 * 4 3 2 9 9 C 1.46893 * 111.00335 * 251.90079 * 8 4 3 10 10 C 1.50702 * 109.47525 * 170.00021 * 9 8 4 11 11 O 1.21296 * 119.99958 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00167 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00389 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99624 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00447 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00170 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47338 * 89.99505 * 17 15 13 19 19 H 1.48500 * 109.47107 * 210.00247 * 17 15 13 20 20 H 1.48504 * 109.46961 * 329.99834 * 17 15 13 21 21 C 1.34782 * 119.99720 * 179.97438 * 2 1 3 22 22 O 1.21279 * 119.99474 * 180.02562 * 21 2 1 23 23 C 1.50701 * 120.00187 * 0.02562 * 21 2 1 24 24 C 1.52998 * 109.47045 * 179.97438 * 23 21 2 25 25 H 1.09000 * 110.54243 * 303.83618 * 24 23 21 26 26 C 1.54807 * 110.48933 * 181.21954 * 24 23 21 27 27 C 1.54994 * 102.09494 * 220.44755 * 26 24 23 28 28 O 1.44380 * 103.49110 * 37.01885 * 27 26 24 29 29 C 1.43739 * 106.97820 * 319.94499 * 28 27 26 30 30 H 1.08998 * 109.47380 * 269.99769 * 1 2 3 31 31 H 1.09004 * 109.47259 * 30.00094 * 1 2 3 32 32 H 1.08999 * 109.47227 * 150.00076 * 1 2 3 33 33 H 1.08996 * 109.47005 * 29.99809 * 3 2 1 34 34 H 1.08998 * 109.47227 * 149.99974 * 3 2 1 35 35 H 1.08997 * 113.73740 * 336.31819 * 6 4 3 36 36 H 1.09005 * 113.73357 * 107.49736 * 6 4 3 37 37 H 1.08996 * 113.76272 * 138.04126 * 7 6 4 38 38 H 1.09002 * 113.75990 * 269.29487 * 7 6 4 39 39 H 1.09009 * 109.47175 * 290.00081 * 9 8 4 40 40 H 1.09000 * 109.47100 * 49.99949 * 9 8 4 41 41 H 0.97003 * 120.00394 * 359.97438 * 12 10 9 42 42 H 0.97000 * 120.00254 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.47079 * 59.99993 * 23 21 2 44 44 H 1.08998 * 109.46729 * 299.99721 * 23 21 2 45 45 H 1.09005 * 110.90346 * 338.64489 * 26 24 23 46 46 H 1.09000 * 110.90998 * 102.24225 * 26 24 23 47 47 H 1.08998 * 110.61564 * 278.52047 * 27 26 24 48 48 H 1.08994 * 110.75808 * 155.58946 * 27 26 24 49 49 H 1.09004 * 109.87903 * 267.08704 * 29 28 27 50 50 H 1.08997 * 109.88645 * 145.93327 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 3.2145 1.1120 -1.9420 6 6 2.6541 3.2283 -1.5999 7 6 1.7731 3.1153 -2.8572 8 7 1.2179 1.8918 -2.2375 9 6 1.0688 0.8198 -3.2306 10 6 -0.3038 0.8943 -3.8482 11 8 -1.0813 1.7561 -3.4960 12 7 -0.6675 0.0034 -4.7918 13 6 -1.9160 0.0715 -5.3540 14 1 -2.6083 0.8389 -5.0404 15 6 -2.2908 -0.8467 -6.3273 16 7 -3.4877 -0.7817 -6.8658 17 14 -1.0937 -2.1743 -6.8692 18 1 -1.2713 -3.3783 -6.0183 19 1 -1.3552 -2.5276 -8.2877 20 1 0.2973 -1.6724 -6.7325 21 6 2.1389 -1.1673 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3853 -2.4724 0.0005 24 6 2.3796 -3.6353 0.0005 25 1 3.0601 -3.5567 -0.8473 26 6 1.6297 -4.9893 -0.0303 27 6 2.4653 -5.8458 0.9548 28 8 2.8416 -4.9051 1.9834 29 6 3.1684 -3.6705 1.3239 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 2.2037 3.8160 -0.8001 36 1 3.6849 3.5146 -1.8088 37 1 1.0487 3.9232 -2.9600 38 1 2.3355 2.9297 -3.7723 39 1 1.8239 0.9371 -4.0081 40 1 1.1961 -0.1470 -2.7435 41 1 -0.0456 -0.6856 -5.0738 42 1 -3.7495 -1.4229 -7.5450 43 1 0.7590 -2.5303 -0.8897 44 1 0.7584 -2.5299 0.8903 45 1 0.6058 -4.8750 0.3256 46 1 1.6462 -5.4204 -1.0313 47 1 3.3495 -6.2471 0.4596 48 1 1.8624 -6.6516 1.3734 49 1 4.2382 -3.6316 1.1189 50 1 2.8783 -2.8273 1.9508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231342686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:51 Heat of formation + Delta-G solvation = -71.181882 kcal Electronic energy + Delta-G solvation = -31046.755787 eV Core-core repulsion = 26882.592418 eV Total energy + Delta-G solvation = -4164.163369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67049 -39.90603 -38.90511 -37.90548 -35.45160 -33.97931 -33.72536 -31.74514 -30.98287 -30.23378 -29.10171 -27.17610 -26.17306 -25.89042 -23.55036 -23.53012 -22.77680 -20.89191 -19.70918 -19.40865 -18.97587 -18.37363 -17.14963 -16.95483 -16.29139 -16.11680 -16.04640 -15.85532 -15.49855 -15.05665 -14.94139 -14.83020 -14.30946 -13.80410 -13.64883 -13.41980 -13.24712 -13.02076 -12.84616 -12.72085 -12.58339 -12.43063 -12.28665 -12.16117 -11.86429 -11.70621 -11.60456 -11.46339 -11.38185 -11.16981 -11.11778 -10.92523 -10.87580 -10.68545 -10.63505 -10.00970 -9.90300 -9.74226 -9.59398 -9.02490 -8.53959 -8.28033 -8.20638 -6.34213 -3.85526 2.54316 2.91316 2.98641 3.02228 3.11281 3.71235 3.76786 3.86846 4.06618 4.18132 4.38342 4.49344 4.60274 4.66190 4.74007 4.77895 4.94933 5.01517 5.09866 5.14036 5.17177 5.22776 5.27252 5.36393 5.37999 5.40822 5.45375 5.47953 5.53776 5.57243 5.61611 5.63646 5.67368 5.72050 5.74810 5.79817 5.87191 5.94364 5.94963 6.04406 6.20000 6.41502 6.53299 6.69059 7.09672 7.34216 7.55268 8.09189 8.11307 8.57528 8.92600 9.39720 9.81510 10.79029 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008252 B = 0.003991 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.165597 B = 7014.667869 C = 9649.992533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.604 5.604 3 C 0.139 3.861 4 C 0.008 3.992 5 H 0.079 0.921 6 C -0.137 4.137 7 C 0.009 3.991 8 N -0.439 5.439 9 C 0.010 3.990 10 C 0.457 3.543 11 O -0.556 6.556 12 N -0.595 5.595 13 C -0.303 4.303 14 H 0.119 0.881 15 C 0.042 3.958 16 N -0.882 5.882 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.271 1.271 21 C 0.510 3.490 22 O -0.547 6.547 23 C -0.134 4.134 24 C -0.105 4.105 25 H 0.090 0.910 26 C -0.154 4.154 27 C 0.047 3.953 28 O -0.384 6.384 29 C 0.062 3.938 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.368 0.632 42 H 0.273 0.727 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -3.836 14.177 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.336 5.336 3 C 0.015 3.985 4 C -0.102 4.102 5 H 0.096 0.904 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.162 5.162 9 C -0.122 4.122 10 C 0.242 3.758 11 O -0.437 6.437 12 N -0.235 5.235 13 C -0.432 4.432 14 H 0.137 0.863 15 C -0.160 4.160 16 N -0.522 5.522 17 Si 0.703 3.297 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.197 1.197 21 C 0.298 3.702 22 O -0.425 6.425 23 C -0.174 4.174 24 C -0.124 4.124 25 H 0.109 0.891 26 C -0.191 4.191 27 C -0.030 4.030 28 O -0.304 6.304 29 C -0.015 4.015 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.201 0.799 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.233 -3.355 14.812 20.144 hybrid contribution 1.393 -1.265 -1.603 2.472 sum 14.626 -4.621 13.209 20.242 Atomic orbital electron populations 1.21987 0.78304 1.05282 1.01427 1.47776 1.07641 1.05572 1.72605 1.21377 0.97446 0.84741 0.94900 1.23945 0.93131 0.96740 0.96416 0.90351 1.23356 1.00062 0.95030 0.99041 1.23852 0.96961 0.95437 0.95683 1.68301 1.29873 1.02318 1.15721 1.22478 0.97248 0.96954 0.95504 1.19581 0.88605 0.84595 0.83028 1.90560 1.53285 1.36714 1.63133 1.42248 1.15359 1.29107 1.36744 1.19411 0.89694 1.15853 1.18251 0.86296 1.25010 0.96301 0.97921 0.96817 1.69613 1.18284 1.36758 1.27533 0.86718 0.80847 0.82600 0.79492 1.19628 1.20144 1.19655 1.20700 0.88031 0.85556 0.75875 1.90673 1.13851 1.87551 1.50406 1.21811 0.98996 0.91638 1.04979 1.22301 0.96912 0.93564 0.99651 0.89116 1.23244 1.00259 0.94807 1.00835 1.23524 0.97727 0.92812 0.88942 1.88861 1.88308 1.22303 1.30887 1.23157 0.98977 0.86749 0.92620 0.92958 0.88370 0.91292 0.89847 0.89674 0.88994 0.91078 0.88895 0.91626 0.92733 0.90081 0.79923 0.91627 0.88233 0.88492 0.90055 0.89866 0.92273 0.89025 0.91982 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.04 59.85 0.60 1.42 16 2 N -0.60 -7.01 2.82 -181.57 -0.51 -7.53 16 3 C 0.14 1.53 5.54 -4.04 -0.02 1.51 16 4 C 0.01 0.10 3.55 -66.66 -0.24 -0.14 16 5 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 6 C -0.14 -1.40 7.84 -25.80 -0.20 -1.60 16 7 C 0.01 0.13 7.95 -2.77 -0.02 0.10 16 8 N -0.44 -6.51 4.37 -232.15 -1.01 -7.53 16 9 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 10 C 0.46 10.05 7.83 -10.99 -0.09 9.97 16 11 O -0.56 -14.41 16.01 5.54 0.09 -14.32 16 12 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 13 C -0.30 -8.40 10.16 -14.93 -0.15 -8.55 16 14 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 17 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 21 C 0.51 6.23 7.18 -10.98 -0.08 6.15 16 22 O -0.55 -7.98 14.66 5.56 0.08 -7.90 16 23 C -0.13 -1.34 3.49 -27.88 -0.10 -1.44 16 24 C -0.11 -1.06 2.66 -89.09 -0.24 -1.29 16 25 H 0.09 0.98 8.02 -51.93 -0.42 0.56 16 26 C -0.15 -1.30 6.71 -24.73 -0.17 -1.46 16 27 C 0.05 0.41 7.72 38.21 0.29 0.70 16 28 O -0.38 -4.53 11.52 -35.23 -0.41 -4.93 16 29 C 0.06 0.69 6.31 37.74 0.24 0.92 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 1.36 7.25 -51.93 -0.38 0.99 16 32 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 33 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 34 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 35 H 0.09 0.87 7.94 -51.93 -0.41 0.45 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 39 H 0.05 0.84 7.38 -51.92 -0.38 0.46 16 40 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 41 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.10 0.96 7.40 -51.93 -0.38 0.58 16 44 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 45 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.94 7.26 -51.93 -0.38 0.56 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -33.33 399.52 -8.30 -41.63 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.28 Total: 11.20 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.29 Total: 7.49 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.81 Total: -53.58 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.24 Total: -27.15 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.33 -8.30 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231342686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.552 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds