Wall clock time and date at job start Tue Mar 31 2020 22:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00044 * 2 1 4 4 C 1.53002 * 109.46934 * 270.00014 * 3 2 1 5 5 H 1.09002 * 112.95722 * 287.13997 * 4 3 2 6 6 C 1.53934 * 113.75755 * 155.49468 * 4 3 2 7 7 C 1.53937 * 86.34107 * 221.96015 * 6 4 3 8 8 N 1.47954 * 113.76111 * 58.93289 * 4 3 2 9 9 C 1.46893 * 111.00335 * 251.90079 * 8 4 3 10 10 C 1.50702 * 109.47525 * 170.00021 * 9 8 4 11 11 O 1.21296 * 119.99958 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00167 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00389 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99624 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00447 * 179.97438 * 13 12 10 16 16 N 1.31407 * 120.00170 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00057 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47338 * 89.99505 * 17 15 13 19 19 H 1.48500 * 109.47107 * 210.00247 * 17 15 13 20 20 H 1.48504 * 109.46961 * 329.99834 * 17 15 13 21 21 C 1.34782 * 119.99720 * 179.97438 * 2 1 3 22 22 O 1.21279 * 119.99474 * 180.02562 * 21 2 1 23 23 C 1.50701 * 120.00187 * 0.02562 * 21 2 1 24 24 C 1.52998 * 109.47045 * 179.97438 * 23 21 2 25 25 H 1.09000 * 110.54243 * 303.83618 * 24 23 21 26 26 C 1.54807 * 110.48933 * 181.21954 * 24 23 21 27 27 C 1.54994 * 102.09494 * 220.44755 * 26 24 23 28 28 O 1.44380 * 103.49110 * 37.01885 * 27 26 24 29 29 C 1.43739 * 106.97820 * 319.94499 * 28 27 26 30 30 H 1.08998 * 109.47380 * 269.99769 * 1 2 3 31 31 H 1.09004 * 109.47259 * 30.00094 * 1 2 3 32 32 H 1.08999 * 109.47227 * 150.00076 * 1 2 3 33 33 H 1.08996 * 109.47005 * 29.99809 * 3 2 1 34 34 H 1.08998 * 109.47227 * 149.99974 * 3 2 1 35 35 H 1.08997 * 113.73740 * 336.31819 * 6 4 3 36 36 H 1.09005 * 113.73357 * 107.49736 * 6 4 3 37 37 H 1.08996 * 113.76272 * 138.04126 * 7 6 4 38 38 H 1.09002 * 113.75990 * 269.29487 * 7 6 4 39 39 H 1.09009 * 109.47175 * 290.00081 * 9 8 4 40 40 H 1.09000 * 109.47100 * 49.99949 * 9 8 4 41 41 H 0.97003 * 120.00394 * 359.97438 * 12 10 9 42 42 H 0.97000 * 120.00254 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.47079 * 59.99993 * 23 21 2 44 44 H 1.08998 * 109.46729 * 299.99721 * 23 21 2 45 45 H 1.09005 * 110.90346 * 338.64489 * 26 24 23 46 46 H 1.09000 * 110.90998 * 102.24225 * 26 24 23 47 47 H 1.08998 * 110.61564 * 278.52047 * 27 26 24 48 48 H 1.08994 * 110.75808 * 155.58946 * 27 26 24 49 49 H 1.09004 * 109.87903 * 267.08704 * 29 28 27 50 50 H 1.08997 * 109.88645 * 145.93327 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 3.2145 1.1120 -1.9420 6 6 2.6541 3.2283 -1.5999 7 6 1.7731 3.1153 -2.8572 8 7 1.2179 1.8918 -2.2375 9 6 1.0688 0.8198 -3.2306 10 6 -0.3038 0.8943 -3.8482 11 8 -1.0813 1.7561 -3.4960 12 7 -0.6675 0.0034 -4.7918 13 6 -1.9160 0.0715 -5.3540 14 1 -2.6083 0.8389 -5.0404 15 6 -2.2908 -0.8467 -6.3273 16 7 -3.4877 -0.7817 -6.8658 17 14 -1.0937 -2.1743 -6.8692 18 1 -1.2713 -3.3783 -6.0183 19 1 -1.3552 -2.5276 -8.2877 20 1 0.2973 -1.6724 -6.7325 21 6 2.1389 -1.1673 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3853 -2.4724 0.0005 24 6 2.3796 -3.6353 0.0005 25 1 3.0601 -3.5567 -0.8473 26 6 1.6297 -4.9893 -0.0303 27 6 2.4653 -5.8458 0.9548 28 8 2.8416 -4.9051 1.9834 29 6 3.1684 -3.6705 1.3239 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1384 0.5138 35 1 2.2037 3.8160 -0.8001 36 1 3.6849 3.5146 -1.8088 37 1 1.0487 3.9232 -2.9600 38 1 2.3355 2.9297 -3.7723 39 1 1.8239 0.9371 -4.0081 40 1 1.1961 -0.1470 -2.7435 41 1 -0.0456 -0.6856 -5.0738 42 1 -3.7495 -1.4229 -7.5450 43 1 0.7590 -2.5303 -0.8897 44 1 0.7584 -2.5299 0.8903 45 1 0.6058 -4.8750 0.3256 46 1 1.6462 -5.4204 -1.0313 47 1 3.3495 -6.2471 0.4596 48 1 1.8624 -6.6516 1.3734 49 1 4.2382 -3.6316 1.1189 50 1 2.8783 -2.8273 1.9508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231342686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:50 Heat of formation + Delta-G solvation = -95.946051 kcal Electronic energy + Delta-G solvation = -31047.829642 eV Core-core repulsion = 26882.592418 eV Total energy + Delta-G solvation = -4165.237224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66287 -40.91291 -39.93139 -39.50123 -36.41265 -35.95899 -34.54266 -33.75731 -32.20826 -31.05655 -30.00823 -28.04687 -27.55630 -27.08685 -25.12121 -24.46527 -23.51045 -21.67952 -21.27829 -20.65409 -20.28051 -19.88482 -18.05876 -17.81857 -17.58339 -17.28088 -17.10731 -16.86518 -16.66274 -16.54286 -16.12784 -15.83438 -15.45135 -15.24928 -14.87361 -14.69040 -14.40372 -14.24535 -14.07445 -13.84866 -13.77735 -13.66643 -13.29074 -13.22582 -13.00839 -12.71817 -12.61608 -12.51216 -12.42631 -12.33626 -12.14428 -12.01919 -11.91206 -11.86199 -11.73849 -11.63232 -11.50355 -10.81051 -10.59656 -10.48651 -10.23774 -9.85034 -9.41108 -8.40919 -6.01080 1.28317 1.32579 1.41575 1.62022 1.95481 2.02183 2.21253 2.62135 3.03145 3.13374 3.23253 3.39572 3.57500 3.65447 3.77350 3.83659 3.92681 4.07512 4.18159 4.21678 4.26568 4.30762 4.33674 4.35744 4.37297 4.40055 4.44620 4.58871 4.64197 4.69189 4.72919 4.81446 4.83109 4.87099 4.89160 4.95033 4.98059 5.06337 5.09934 5.21174 5.25873 5.39356 5.52509 5.56372 5.92649 5.93029 6.04393 6.42787 6.59876 6.89184 7.17000 7.40180 7.97216 8.76662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008252 B = 0.003991 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.165597 B = 7014.667869 C = 9649.992533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.604 5.604 3 C 0.137 3.863 4 C 0.015 3.985 5 H 0.076 0.924 6 C -0.115 4.115 7 C -0.001 4.001 8 N -0.461 5.461 9 C 0.026 3.974 10 C 0.460 3.540 11 O -0.600 6.600 12 N -0.595 5.595 13 C -0.323 4.323 14 H 0.058 0.942 15 C -0.011 4.011 16 N -0.933 5.933 17 Si 0.958 3.042 18 H -0.253 1.253 19 H -0.276 1.276 20 H -0.239 1.239 21 C 0.507 3.493 22 O -0.572 6.572 23 C -0.131 4.131 24 C -0.103 4.103 25 H 0.082 0.918 26 C -0.148 4.148 27 C 0.040 3.960 28 O -0.405 6.405 29 C 0.064 3.936 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.385 0.615 42 H 0.279 0.721 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.052 0.948 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.422 -5.544 14.593 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.335 5.335 3 C 0.014 3.986 4 C -0.095 4.095 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.130 4.130 8 N -0.184 5.184 9 C -0.106 4.106 10 C 0.247 3.753 11 O -0.483 6.483 12 N -0.237 5.237 13 C -0.452 4.452 14 H 0.076 0.924 15 C -0.210 4.210 16 N -0.574 5.574 17 Si 0.778 3.222 18 H -0.177 1.177 19 H -0.201 1.201 20 H -0.162 1.162 21 C 0.297 3.703 22 O -0.453 6.453 23 C -0.170 4.170 24 C -0.122 4.122 25 H 0.101 0.899 26 C -0.186 4.186 27 C -0.036 4.036 28 O -0.325 6.325 29 C -0.013 4.013 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.220 0.780 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.714 -5.051 15.248 22.471 hybrid contribution 0.549 -0.616 -1.662 1.856 sum 16.263 -5.667 13.585 21.935 Atomic orbital electron populations 1.21923 0.78148 1.04008 1.02410 1.47843 1.07701 1.05782 1.72190 1.21441 0.97778 0.84834 0.94513 1.23945 0.91434 0.97968 0.96131 0.90584 1.23270 1.00806 0.93846 0.97373 1.23931 0.97250 0.94338 0.97490 1.68300 1.32040 1.02269 1.15800 1.22329 0.93391 0.98545 0.96328 1.20649 0.90216 0.82836 0.81578 1.90542 1.55315 1.38294 1.64153 1.42083 1.14201 1.30206 1.37229 1.18975 0.90985 1.15425 1.19854 0.92434 1.26001 0.98481 1.00486 0.96001 1.69791 1.20990 1.38296 1.28345 0.85468 0.79169 0.78726 0.78827 1.17732 1.20100 1.16234 1.21053 0.87812 0.86217 0.75248 1.90662 1.14982 1.87920 1.51700 1.21829 0.98898 0.90398 1.05893 1.22257 0.96850 0.94529 0.98552 0.89911 1.23242 1.00200 0.93631 1.01491 1.23737 0.98412 0.92760 0.88649 1.88837 1.88470 1.22908 1.32304 1.23079 0.98610 0.86513 0.93063 0.90888 0.91041 0.91062 0.88882 0.89362 0.88025 0.88651 0.90866 0.90984 0.90761 0.88533 0.77962 0.91193 0.87522 0.87180 0.89435 0.88567 0.91586 0.87436 0.92960 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 10.04 127.77 1.28 2.93 16 2 N -0.60 -12.92 2.82 -846.76 -2.39 -15.31 16 3 C 0.14 2.75 5.54 86.38 0.48 3.23 16 4 C 0.02 0.33 3.55 45.02 0.16 0.49 16 5 H 0.08 1.72 7.93 -2.39 -0.02 1.70 16 6 C -0.11 -2.05 7.84 31.24 0.25 -1.81 16 7 C 0.00 -0.03 7.95 86.41 0.69 0.65 16 8 N -0.46 -13.07 4.37 -888.39 -3.88 -16.95 16 9 C 0.03 0.82 5.28 85.56 0.45 1.27 16 10 C 0.46 20.29 7.83 87.66 0.69 20.97 16 11 O -0.60 -32.21 16.01 -3.08 -0.05 -32.25 16 12 N -0.60 -27.58 5.09 -306.98 -1.56 -29.14 16 13 C -0.32 -18.52 10.16 84.04 0.85 -17.66 16 14 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 16 N -0.93 -55.32 13.96 21.66 0.30 -55.02 16 17 Si 0.96 38.17 27.74 68.60 1.90 40.07 16 18 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.24 -8.20 6.52 99.48 0.65 -7.55 16 21 C 0.51 11.46 7.18 87.66 0.63 12.09 16 22 O -0.57 -15.87 14.66 -3.03 -0.04 -15.91 16 23 C -0.13 -2.33 3.49 29.85 0.10 -2.23 16 24 C -0.10 -1.87 2.66 -9.80 -0.03 -1.90 16 25 H 0.08 1.65 8.02 -2.39 -0.02 1.63 16 26 C -0.15 -2.12 6.71 31.89 0.21 -1.91 16 27 C 0.04 0.63 7.72 72.66 0.56 1.19 16 28 O -0.41 -9.05 11.52 -148.98 -1.72 -10.77 16 29 C 0.06 1.37 6.31 72.36 0.46 1.82 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.95 7.25 -2.39 -0.02 1.94 16 32 H 0.07 1.47 6.44 -2.39 -0.02 1.45 16 33 H 0.09 1.68 7.84 -2.39 -0.02 1.66 16 34 H 0.09 1.76 7.42 -2.39 -0.02 1.74 16 35 H 0.10 1.65 7.94 -2.39 -0.02 1.63 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 39 H 0.07 2.07 7.38 -2.38 -0.02 2.05 16 40 H 0.10 2.75 8.08 -2.39 -0.02 2.73 16 41 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 42 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.11 1.78 7.40 -2.39 -0.02 1.77 16 44 H 0.11 1.68 8.11 -2.39 -0.02 1.66 16 45 H 0.09 1.16 7.87 -2.38 -0.02 1.14 16 46 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.07 1.63 7.26 -2.39 -0.02 1.62 16 Total: -1.00 -76.64 399.52 0.16 -76.49 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.35 Total: 39.78 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 7.25 Total: 19.02 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -7.53 Total: -116.42 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -1.81 Total: -58.93 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.07 kcal Total: -76.64 0.16 -76.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231342686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.461 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds