Wall clock time and date at job start Tue Mar 31 2020 22:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99719 * 2 1 4 4 C 1.52999 * 109.46969 * 274.73077 * 3 2 1 5 5 H 1.09002 * 112.74312 * 316.18241 * 4 3 2 6 6 C 1.53495 * 113.46879 * 86.93217 * 4 3 2 7 7 C 1.53615 * 83.30460 * 140.82748 * 6 4 3 8 8 N 1.47063 * 88.00762 * 333.97831 * 7 6 4 9 9 C 1.36936 * 136.06244 * 207.09913 * 8 7 6 10 10 H 1.08002 * 120.00385 * 174.74047 * 9 8 7 11 11 C 1.38816 * 119.99823 * 354.74696 * 9 8 7 12 12 N 1.31610 * 119.99979 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46668 * 89.99941 * 13 11 9 15 15 H 1.48501 * 109.47307 * 209.99822 * 13 11 9 16 16 H 1.48501 * 109.47246 * 330.00553 * 13 11 9 17 17 C 1.34773 * 120.00103 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00246 * 175.01224 * 17 2 1 19 19 C 1.50703 * 119.99915 * 354.73129 * 17 2 1 20 20 C 1.52999 * 109.47194 * 180.27966 * 19 17 2 21 21 C 1.53000 * 109.46796 * 179.97438 * 20 19 17 22 22 H 1.09004 * 110.33319 * 55.79926 * 21 20 19 23 23 C 1.54479 * 110.36809 * 178.16486 * 21 20 19 24 24 C 1.54513 * 104.06363 * 142.81060 * 23 21 20 25 25 C 1.54485 * 104.06112 * 0.02562 * 24 23 21 26 26 H 1.08996 * 110.37496 * 94.84799 * 25 24 23 27 27 C 1.50699 * 110.37160 * 217.18755 * 25 24 23 28 28 N 1.34772 * 119.99872 * 291.83552 * 27 25 24 29 29 O 1.21283 * 119.99474 * 111.83247 * 27 25 24 30 30 O 1.44419 * 110.37755 * 293.54611 * 21 20 19 31 31 H 1.09005 * 109.46657 * 270.00187 * 1 2 3 32 32 H 1.09003 * 109.47047 * 29.99443 * 1 2 3 33 33 H 1.08991 * 109.47425 * 149.99741 * 1 2 3 34 34 H 1.09002 * 109.47268 * 34.73055 * 3 2 1 35 35 H 1.09001 * 109.46685 * 154.73691 * 3 2 1 36 36 H 1.08990 * 114.20637 * 254.43243 * 6 4 3 37 37 H 1.09000 * 114.20563 * 27.26445 * 6 4 3 38 38 H 1.09003 * 113.50883 * 219.18669 * 7 6 4 39 39 H 1.09000 * 113.41490 * 88.76299 * 7 6 4 40 40 H 0.97005 * 120.00405 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.46727 * 300.28275 * 19 17 2 42 42 H 1.09003 * 109.47145 * 60.27629 * 19 17 2 43 43 H 1.08995 * 109.46999 * 299.99963 * 20 19 17 44 44 H 1.08997 * 109.47136 * 60.00172 * 20 19 17 45 45 H 1.09000 * 110.51146 * 261.45711 * 23 21 20 46 46 H 1.08996 * 110.51340 * 24.16496 * 23 21 20 47 47 H 1.08988 * 110.51359 * 241.35630 * 24 23 21 48 48 H 1.09005 * 110.62631 * 118.69609 * 24 23 21 49 49 H 0.96996 * 119.99938 * 359.97438 * 28 27 25 50 50 H 0.97006 * 119.99543 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3494 1.7699 -1.4376 5 1 2.6328 0.9789 -2.1319 6 6 1.1593 2.6102 -1.9210 7 6 2.2564 3.4516 -2.5905 8 7 3.1831 2.9761 -1.5523 9 6 4.3210 3.4487 -0.9548 10 1 4.7649 2.9060 -0.1332 11 6 4.9039 4.6253 -1.4050 12 7 4.3633 5.2864 -2.4064 13 14 6.4558 5.2704 -0.5894 14 1 7.6462 4.7093 -1.2774 15 1 6.4838 6.7523 -0.6810 16 1 6.4710 4.8622 0.8383 17 6 2.1389 -1.1672 -0.0005 18 8 3.3483 -1.1691 -0.0918 19 6 1.3902 -2.4696 0.1187 20 6 2.3839 -3.6328 0.0996 21 6 1.6238 -4.9550 0.2213 22 1 0.8749 -5.0353 -0.5667 23 6 2.6045 -6.1468 0.1579 24 6 2.0222 -7.1660 1.1627 25 6 0.7581 -6.4696 1.7137 26 1 -0.1229 -6.7843 1.1545 27 6 0.5874 -6.7755 3.1795 28 7 0.2814 -8.0268 3.5755 29 8 0.7256 -5.8955 4.0026 30 8 1.0002 -5.0588 1.5198 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 1.6477 2.0057 0.5855 35 1 3.1840 1.1187 0.4386 36 1 0.5023 2.0935 -2.6205 37 1 0.6238 3.1265 -1.1243 38 1 2.0691 4.5245 -2.5467 39 1 2.5143 3.1089 -3.5926 40 1 4.7704 6.1089 -2.7208 41 1 0.8324 -2.4835 1.0552 42 1 0.6984 -2.5689 -0.7177 43 1 2.9416 -3.6187 -0.8368 44 1 3.0757 -3.5335 0.9360 45 1 2.6266 -6.5703 -0.8462 46 1 3.6033 -5.8363 0.4645 47 1 2.7330 -7.3593 1.9659 48 1 1.7565 -8.0946 0.6573 49 1 0.1706 -8.7304 2.9171 50 1 0.1719 -8.2237 4.5190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264366871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:47 Heat of formation + Delta-G solvation = -63.050635 kcal Electronic energy + Delta-G solvation = -29637.356420 eV Core-core repulsion = 25473.545649 eV Total energy + Delta-G solvation = -4163.810772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.69620 -39.72634 -38.74395 -37.91554 -35.08830 -34.28935 -33.68830 -32.41900 -32.10077 -29.71954 -28.20289 -27.84242 -26.34705 -25.04074 -23.38656 -22.88037 -21.82125 -21.25112 -20.92182 -19.20565 -18.75102 -18.15602 -17.37967 -17.06335 -16.68035 -16.51966 -16.09640 -15.79422 -15.40619 -15.08364 -14.67881 -14.65095 -14.15900 -14.08959 -13.81379 -13.54889 -13.27936 -13.17617 -12.61506 -12.57821 -12.43235 -12.26061 -12.18354 -11.91642 -11.69272 -11.42293 -11.31663 -11.20202 -11.06317 -10.97303 -10.81131 -10.69248 -10.41616 -10.36797 -10.18344 -10.03229 -9.78151 -9.76418 -9.54069 -9.27067 -8.71850 -8.17960 -6.78939 -5.69012 -3.00258 2.15311 2.68960 2.93999 3.28420 3.46422 3.51384 3.53306 3.62661 4.02277 4.21677 4.35931 4.46376 4.55120 4.64594 4.68615 4.80282 4.96048 5.09028 5.15277 5.20253 5.26909 5.31479 5.37646 5.43695 5.47389 5.55053 5.59603 5.62220 5.66970 5.82622 5.89388 5.91245 6.07153 6.13886 6.24954 6.25262 6.38621 6.42656 6.52745 6.64863 6.76075 6.82005 6.96687 7.31059 7.48265 7.64616 7.71198 7.79977 8.06664 8.50172 9.13312 9.79233 10.73584 11.49287 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.001994 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.344380 B =14037.598657 C =14482.974218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.114 3.886 4 C 0.135 3.865 5 H 0.042 0.958 6 C -0.170 4.170 7 C 0.158 3.842 8 N -0.601 5.601 9 C -0.212 4.212 10 H 0.081 0.919 11 C -0.010 4.010 12 N -0.922 5.922 13 Si 0.911 3.089 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.507 3.493 18 O -0.538 6.538 19 C -0.136 4.136 20 C -0.097 4.097 21 C 0.072 3.928 22 H 0.075 0.925 23 C -0.150 4.150 24 C -0.144 4.144 25 C 0.056 3.944 26 H 0.095 0.905 27 C 0.521 3.479 28 N -0.854 5.854 29 O -0.517 6.517 30 O -0.338 6.338 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.252 0.748 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.401 0.599 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 -29.802 5.060 33.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C -0.009 4.009 4 C 0.026 3.974 5 H 0.060 0.940 6 C -0.208 4.208 7 C 0.032 3.968 8 N -0.327 5.327 9 C -0.340 4.340 10 H 0.099 0.901 11 C -0.206 4.206 12 N -0.569 5.569 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.295 3.705 18 O -0.415 6.415 19 C -0.176 4.176 20 C -0.135 4.135 21 C 0.015 3.985 22 H 0.093 0.907 23 C -0.187 4.187 24 C -0.182 4.182 25 C -0.006 4.006 26 H 0.112 0.888 27 C 0.304 3.696 28 N -0.420 5.420 29 O -0.391 6.391 30 O -0.256 6.256 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.229 0.771 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -13.227 -28.618 5.614 32.023 hybrid contribution 0.715 -0.297 0.139 0.787 sum -12.512 -28.914 5.753 32.026 Atomic orbital electron populations 1.21790 0.79981 1.03176 1.01523 1.47899 1.06818 1.06557 1.73319 1.21849 0.97383 0.82672 0.98964 1.22398 0.90273 0.91036 0.93656 0.94040 1.23784 0.96311 1.00057 1.00641 1.21950 0.85176 0.98529 0.91107 1.45699 1.28278 1.16186 1.42510 1.18944 0.99782 1.04491 1.10777 0.90141 1.24802 0.99172 0.98302 0.98304 1.69842 1.40903 1.17813 1.28330 0.86130 0.83148 0.77832 0.78778 1.21630 1.21715 1.20552 1.20663 0.88072 0.85406 0.76373 1.90723 1.14301 1.87241 1.49195 1.21656 0.99294 0.92281 1.04370 1.21422 0.97318 0.90348 1.04428 1.23187 0.93922 0.95835 0.85579 0.90723 1.22995 1.00774 0.95085 0.99896 1.22907 0.96364 0.99203 0.99727 1.22813 0.99397 0.85162 0.93240 0.88752 1.20289 0.76068 0.82630 0.90626 1.43749 1.75119 1.10722 1.12456 1.90814 1.48165 1.45692 1.54390 1.89320 1.80631 1.20067 1.35631 0.92862 0.90552 0.91469 0.90679 0.89908 0.92821 0.90574 0.91610 0.95823 0.93770 0.88366 0.89266 0.89478 0.90062 0.89838 0.89747 0.90181 0.89606 0.77073 0.76344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.22 59.85 0.61 1.47 16 2 N -0.61 -9.55 2.87 -181.56 -0.52 -10.07 16 3 C 0.11 2.21 5.37 -4.04 -0.02 2.19 16 4 C 0.13 2.91 4.31 -72.40 -0.31 2.60 16 5 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.17 -3.22 7.13 -26.16 -0.19 -3.41 16 7 C 0.16 3.86 7.28 -8.45 -0.06 3.80 16 8 N -0.60 -16.10 3.65 -176.79 -0.64 -16.74 16 9 C -0.21 -6.23 10.55 -15.06 -0.16 -6.39 16 10 H 0.08 2.32 7.83 -52.49 -0.41 1.91 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.92 -28.33 11.64 55.49 0.65 -27.69 16 13 Si 0.91 23.18 29.55 -169.99 -5.02 18.16 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.51 8.24 7.66 -10.99 -0.08 8.16 16 18 O -0.54 -11.18 15.54 5.56 0.09 -11.09 16 19 C -0.14 -1.56 4.28 -27.88 -0.12 -1.68 16 20 C -0.10 -1.07 4.14 -26.73 -0.11 -1.18 16 21 C 0.07 0.60 3.27 -25.95 -0.08 0.52 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 C -0.15 -0.95 6.63 -25.16 -0.17 -1.12 16 24 C -0.14 -0.73 6.62 -25.16 -0.17 -0.89 16 25 C 0.06 0.39 3.71 -27.10 -0.10 0.29 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 C 0.52 4.52 7.34 -10.99 -0.08 4.44 16 28 N -0.85 -3.21 8.87 31.22 0.28 -2.93 16 29 O -0.52 -7.45 17.39 -13.65 -0.24 -7.69 16 30 O -0.34 -3.64 10.26 -54.43 -0.56 -4.19 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.82 7.15 -51.93 -0.37 0.44 16 33 H 0.07 0.57 6.49 -51.93 -0.34 0.23 16 34 H 0.07 1.38 7.84 -51.93 -0.41 0.97 16 35 H 0.08 1.86 7.36 -51.93 -0.38 1.48 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 38 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.10 1.11 7.91 -51.92 -0.41 0.70 16 42 H 0.09 0.80 7.26 -51.93 -0.38 0.42 16 43 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.62 7.87 -51.93 -0.41 0.22 16 47 H 0.08 0.46 7.86 -51.94 -0.41 0.06 16 48 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 49 H 0.40 0.11 8.83 -40.82 -0.36 -0.25 16 50 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -40.04 405.39 -9.40 -49.43 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -8.39 Total: -1.72 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.14 Total: 8.42 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.24 Total: -57.43 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.71 Total: -22.97 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -40.04 -9.40 -49.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264366871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -40.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds