Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99872 * 2 1 4 4 C 1.50703 * 109.47075 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00130 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99614 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00612 * 359.97438 * 6 4 3 8 8 C 1.46500 * 119.99467 * 179.97438 * 6 4 3 9 9 C 1.50706 * 109.47299 * 90.00143 * 8 6 4 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 8 6 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.31967 * 35.07527 * 12 11 9 14 14 C 1.53023 * 109.32506 * 154.72215 * 12 11 9 15 15 C 1.53975 * 108.82403 * 175.67886 * 14 12 11 16 16 H 1.08998 * 112.99540 * 169.00328 * 15 14 12 17 17 C 1.55429 * 106.41349 * 293.81838 * 15 14 12 18 18 C 1.55169 * 100.35299 * 73.37857 * 17 15 14 19 19 H 1.09007 * 112.48274 * 162.67277 * 18 17 15 20 20 C 1.52987 * 109.32138 * 275.60929 * 12 11 9 21 21 N 1.47790 * 104.25714 * 40.55254 * 18 17 15 22 22 C 1.36932 * 125.85777 * 153.54602 * 21 18 17 23 23 H 1.08007 * 119.99942 * 0.02562 * 22 21 18 24 24 C 1.38805 * 120.00080 * 179.97438 * 22 21 18 25 25 N 1.31618 * 119.99866 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00243 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46988 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47215 * 119.99942 * 26 24 22 29 29 H 1.48500 * 109.47321 * 240.00256 * 26 24 22 30 30 C 1.47079 * 108.28415 * 333.53304 * 21 18 17 31 31 H 1.08994 * 109.47178 * 60.00169 * 1 2 3 32 32 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46652 * 299.99818 * 1 2 3 34 34 H 1.08994 * 109.47197 * 59.99866 * 3 2 1 35 35 H 1.09005 * 109.46972 * 300.00285 * 3 2 1 36 36 H 1.09000 * 109.47154 * 270.00482 * 7 6 4 37 37 H 1.09008 * 109.46598 * 29.99961 * 7 6 4 38 38 H 1.09000 * 109.47072 * 149.99709 * 7 6 4 39 39 H 1.09004 * 109.47418 * 330.00294 * 8 6 4 40 40 H 1.08998 * 109.47468 * 210.00221 * 8 6 4 41 41 H 0.97005 * 120.00161 * 359.72088 * 11 9 8 42 42 H 1.08999 * 109.58178 * 295.47640 * 14 12 11 43 43 H 1.08998 * 109.58155 * 55.74649 * 14 12 11 44 44 H 1.09005 * 111.23087 * 191.15863 * 17 15 14 45 45 H 1.09004 * 111.23048 * 315.55302 * 17 15 14 46 46 H 1.09003 * 109.53602 * 304.52770 * 20 12 11 47 47 H 1.09006 * 109.53281 * 64.75837 * 20 12 11 48 48 H 0.97008 * 119.99667 * 179.97438 * 25 24 22 49 49 H 1.09001 * 109.97417 * 241.74850 * 30 21 18 50 50 H 1.08993 * 109.97895 * 120.46666 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0342 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0013 7 6 3.6464 3.6194 -0.0019 8 6 5.7368 2.1812 -0.0013 9 6 6.2376 2.1408 -1.4222 10 8 5.4518 2.2021 -2.3440 11 7 7.5584 2.0355 -1.6685 12 6 8.0452 1.9968 -3.0498 13 1 7.4208 2.6397 -3.6703 14 6 9.4896 2.5002 -3.0919 15 6 10.0254 2.3529 -4.5279 16 1 10.9764 2.8627 -4.6820 17 6 10.0951 0.8272 -4.8163 18 6 8.5862 0.5054 -4.9816 19 1 8.4156 -0.4476 -5.4826 20 6 7.9666 0.5618 -3.5742 21 7 8.0519 1.6500 -5.7488 22 6 6.9533 1.6253 -6.5658 23 1 6.3946 0.7096 -6.6919 24 6 6.5570 2.7773 -7.2310 25 7 7.2375 3.8933 -7.0769 26 14 5.0579 2.7437 -8.3450 27 1 4.4738 1.3784 -8.3479 28 1 4.0492 3.7131 -7.8469 29 1 5.4592 3.1128 -9.7263 30 6 8.9024 2.8203 -5.4840 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6886 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.4900 3.9469 -1.0297 37 1 2.6867 3.5649 0.5121 38 1 4.2937 4.3304 0.5116 39 1 6.0288 1.2655 0.5129 40 1 6.1694 3.0399 0.5121 41 1 8.1871 1.9898 -0.9312 42 1 9.5197 3.5491 -2.7968 43 1 10.1019 1.9110 -2.4093 44 1 10.6453 0.6238 -5.7350 45 1 10.5251 0.2855 -3.9737 46 1 8.5173 -0.1009 -2.9066 47 1 6.9238 0.2480 -3.6223 48 1 6.9607 4.6983 -7.5422 49 1 8.3154 3.6081 -5.0118 50 1 9.3346 3.1851 -6.4157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271416035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = -97.714188 kcal Electronic energy + Delta-G solvation = -31334.676867 eV Core-core repulsion = 27169.362970 eV Total energy + Delta-G solvation = -4165.313896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69406 -41.09391 -39.85163 -38.44534 -36.60829 -36.01265 -34.71193 -32.40148 -31.86884 -30.88917 -29.88638 -28.67668 -27.38796 -27.22171 -26.25691 -24.94760 -23.26394 -21.69295 -21.24465 -20.67472 -20.03072 -18.96675 -18.49912 -18.36476 -17.86857 -17.34056 -17.23543 -16.62481 -16.60067 -16.21902 -15.85662 -15.65962 -15.48163 -15.30321 -14.82295 -14.44550 -14.17136 -14.03100 -13.89516 -13.81536 -13.51551 -13.47768 -13.33322 -13.25355 -13.20451 -13.03370 -12.82184 -12.65770 -12.53449 -12.38013 -12.15868 -11.90097 -11.66989 -11.43935 -11.16820 -11.08648 -10.99620 -10.89517 -10.81380 -10.70418 -9.96445 -9.78065 -8.84192 -7.85477 -5.16784 1.32364 1.35653 1.38226 1.47311 1.67676 1.70374 2.35405 2.46301 2.93276 3.32473 3.51379 3.63592 3.78460 3.81514 3.95033 4.00853 4.12492 4.15525 4.18919 4.29901 4.35020 4.37888 4.43385 4.46106 4.51788 4.52633 4.59683 4.63438 4.66484 4.79749 4.81848 4.82512 4.90762 5.08942 5.18012 5.25459 5.29687 5.33286 5.43225 5.46755 5.48854 5.66599 5.75687 5.83943 5.94695 6.21901 6.23299 6.66099 7.01737 7.13159 7.41232 7.80783 8.44766 9.24533 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.003646 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.661365 B = 7678.329625 C = 9216.140961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.048 3.952 4 C 0.507 3.493 5 O -0.573 6.573 6 N -0.598 5.598 7 C 0.070 3.930 8 C 0.104 3.896 9 C 0.479 3.521 10 O -0.584 6.584 11 N -0.710 5.710 12 C 0.156 3.844 13 H 0.046 0.954 14 C -0.099 4.099 15 C -0.107 4.107 16 H 0.114 0.886 17 C -0.110 4.110 18 C 0.139 3.861 19 H 0.056 0.944 20 C -0.122 4.122 21 N -0.614 5.614 22 C -0.230 4.230 23 H 0.064 0.936 24 C -0.062 4.062 25 N -0.946 5.946 26 Si 0.965 3.035 27 H -0.275 1.275 28 H -0.296 1.296 29 H -0.283 1.283 30 C 0.191 3.809 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.160 0.840 41 H 0.417 0.583 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.006 0.994 48 H 0.244 0.756 49 H 0.006 0.994 50 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 0.572 22.796 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.031 4.031 4 C 0.295 3.705 5 O -0.452 6.452 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.022 4.022 9 C 0.265 3.735 10 O -0.463 6.463 11 N -0.363 5.363 12 C 0.051 3.949 13 H 0.064 0.936 14 C -0.137 4.137 15 C -0.126 4.126 16 H 0.132 0.868 17 C -0.148 4.148 18 C 0.032 3.968 19 H 0.074 0.926 20 C -0.163 4.163 21 N -0.338 5.338 22 C -0.359 4.359 23 H 0.082 0.918 24 C -0.255 4.255 25 N -0.596 5.596 26 Si 0.794 3.206 27 H -0.200 1.200 28 H -0.224 1.224 29 H -0.210 1.210 30 C 0.066 3.934 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.177 0.823 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.024 0.976 50 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -2.259 0.019 22.019 22.135 hybrid contribution -1.254 0.351 -1.253 1.807 sum -3.513 0.370 20.766 21.064 Atomic orbital electron populations 1.23052 0.78147 1.04257 1.01675 1.87964 1.22350 1.26745 1.95765 1.22399 0.89059 0.86772 1.04830 1.21002 0.90549 0.83795 0.75105 1.90683 1.75666 1.28337 1.50488 1.47483 1.05599 1.07502 1.72561 1.22190 1.00679 0.81938 1.02358 1.21529 0.80991 1.07893 0.91824 1.22070 0.82873 0.75402 0.93171 1.90779 1.56615 1.50649 1.48256 1.45955 1.07158 1.74215 1.09005 1.20758 0.96278 0.96299 0.81538 0.93606 1.21894 0.92987 1.01782 0.97003 1.22815 0.98372 0.96872 0.94570 0.86837 1.22942 0.94130 0.95582 1.02194 1.21861 0.94054 0.90815 0.90114 0.92568 1.22417 0.98539 0.96939 0.98415 1.44834 1.29948 1.07119 1.51927 1.19305 1.02954 0.95583 1.18106 0.91759 1.25433 1.01915 0.95624 1.02558 1.70163 1.41765 1.00249 1.47408 0.85197 0.79511 0.77207 0.78650 1.20011 1.22360 1.20980 1.21031 0.89423 0.88368 0.94599 0.93063 0.88652 0.91236 0.85804 0.89244 0.94094 0.87624 0.87511 0.86509 0.82257 0.74586 0.91157 0.87711 0.91891 0.87562 0.89942 0.97461 0.94668 0.97618 0.97911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -11.05 10.24 -129.94 -1.33 -12.38 16 3 C 0.05 1.05 4.97 71.24 0.35 1.41 16 4 C 0.51 15.11 7.75 87.66 0.68 15.79 16 5 O -0.57 -22.91 16.08 16.00 0.26 -22.65 16 6 N -0.60 -14.14 2.36 -851.12 -2.01 -16.15 16 7 C 0.07 1.04 10.29 127.77 1.31 2.35 16 8 C 0.10 2.27 5.93 85.64 0.51 2.78 16 9 C 0.48 16.18 7.85 87.66 0.69 16.87 16 10 O -0.58 -28.04 16.09 -3.03 -0.05 -28.09 16 11 N -0.71 -20.48 5.07 -442.50 -2.24 -22.72 16 12 C 0.16 5.82 2.07 44.99 0.09 5.92 16 13 H 0.05 2.39 5.38 -2.39 -0.01 2.38 16 14 C -0.10 -2.80 4.95 30.93 0.15 -2.65 16 15 C -0.11 -3.62 4.33 -9.04 -0.04 -3.66 16 16 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 17 C -0.11 -3.55 6.18 32.17 0.20 -3.35 16 18 C 0.14 5.92 4.30 45.79 0.20 6.12 16 19 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 20 C -0.12 -4.87 5.27 30.89 0.16 -4.71 16 21 N -0.61 -33.18 2.43 -664.46 -1.61 -34.80 16 22 C -0.23 -14.16 10.29 84.03 0.86 -13.30 16 23 H 0.06 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.06 -3.86 5.49 84.86 0.47 -3.40 16 25 N -0.95 -60.19 10.35 21.65 0.22 -59.97 16 26 Si 0.96 50.48 29.55 68.60 2.03 52.50 16 27 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 29 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 30 C 0.19 9.56 4.10 86.85 0.36 9.92 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.12 1.47 7.40 -2.39 -0.02 1.45 16 35 H 0.09 1.80 8.11 -2.38 -0.02 1.78 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.83 6.44 -2.38 -0.02 0.81 16 38 H 0.11 0.92 7.89 -2.39 -0.02 0.90 16 39 H 0.12 2.49 7.42 -2.39 -0.02 2.47 16 40 H 0.16 1.73 7.89 -2.39 -0.02 1.71 16 41 H 0.42 7.47 8.60 -92.70 -0.80 6.68 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 44 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.11 2.52 7.75 -2.39 -0.02 2.50 16 46 H 0.08 2.62 8.00 -2.39 -0.02 2.60 16 47 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.24 15.07 8.31 -92.70 -0.77 14.30 16 49 H 0.01 0.33 6.15 -2.39 -0.01 0.31 16 50 H 0.00 0.15 7.40 -2.39 -0.02 0.13 16 Total: -1.00 -99.45 394.11 2.65 -96.80 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.15 Total: 15.73 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 7.24 Total: 31.71 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -5.64 Total: -133.63 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -1.12 Total: -63.12 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.50 kcal Total: -99.45 2.65 -96.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271416035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.917 kcal (2) G-P(sol) polarization free energy of solvation -99.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds