Wall clock time and date at job start Tue Mar 31 2020 22:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99845 * 2 1 4 4 C 1.34774 * 120.00016 * 180.02562 * 2 1 3 5 5 O 1.21284 * 120.00049 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99939 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47036 * 180.02562 * 6 4 2 8 8 N 1.46506 * 109.46716 * 179.97438 * 7 6 4 9 9 C 1.46290 * 118.72450 * 270.03761 * 8 7 6 10 10 C 1.52454 * 109.56650 * 164.05723 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.35551 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42571 * 112.70892 * 44.96581 * 10 9 8 25 25 C 1.43063 * 112.97313 * 296.16735 * 24 10 9 26 26 C 1.33713 * 118.72327 * 90.00420 * 8 7 6 27 27 O 1.21281 * 118.36135 * 3.31885 * 26 8 7 28 28 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46445 * 299.99675 * 1 2 3 30 30 H 1.08997 * 109.47416 * 59.99956 * 1 2 3 31 31 H 1.09005 * 109.46943 * 270.00633 * 3 2 1 32 32 H 1.09003 * 109.47248 * 30.00273 * 3 2 1 33 33 H 1.08995 * 109.47247 * 150.00392 * 3 2 1 34 34 H 1.08994 * 109.47151 * 59.99807 * 6 4 2 35 35 H 1.09008 * 109.47322 * 300.00276 * 6 4 2 36 36 H 1.08996 * 109.47251 * 60.00370 * 7 6 4 37 37 H 1.08998 * 109.47277 * 300.00125 * 7 6 4 38 38 H 1.08997 * 109.47105 * 44.02186 * 9 8 7 39 39 H 1.09001 * 109.44349 * 284.07403 * 9 8 7 40 40 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 41 41 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 42 42 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 43 43 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 44 44 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 45 45 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 46 46 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 47 47 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 48 48 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 49 49 H 1.08998 * 109.35067 * 167.37378 * 25 24 10 50 50 H 1.09007 * 109.34082 * 287.06565 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0015 6 6 3.6460 -1.1672 -0.0011 7 6 4.1559 -2.6096 -0.0023 8 7 5.6210 -2.6095 -0.0035 9 6 6.3230 -2.6079 -1.2869 10 6 7.7798 -2.2135 -1.0715 11 6 8.0348 -0.7065 -1.1085 12 7 9.2721 -0.9922 -1.8607 13 6 9.4539 -0.0336 -2.9588 14 6 10.8532 -0.2000 -3.5547 15 6 11.0399 0.7839 -4.6809 16 1 10.2406 1.4605 -4.9449 17 6 12.2334 0.8245 -5.3700 18 7 12.3983 1.6868 -6.3493 19 14 13.6162 -0.3453 -4.9129 20 1 13.4882 -1.5959 -5.7033 21 1 14.9235 0.2947 -5.2072 22 1 13.5361 -0.6645 -3.4648 23 6 8.6309 -2.2317 -2.3413 24 8 8.3719 -2.8804 0.0408 25 6 7.7597 -2.5380 1.2877 26 6 6.2645 -2.6102 1.1686 27 8 5.6079 -2.6726 2.1864 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.3791 1.5834 -1.0277 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5137 34 1 4.0096 -0.6535 0.8888 35 1 4.0090 -0.6531 -0.8911 36 1 3.7923 -3.1228 -0.8925 37 1 3.7930 -3.1241 0.8875 38 1 5.8490 -1.8930 -1.9594 39 1 6.2779 -3.6044 -1.7263 40 1 8.2145 -0.2718 -0.1252 41 1 7.2931 -0.1543 -1.6856 42 1 9.3395 0.9812 -2.5778 43 1 8.7062 -0.2185 -3.7301 44 1 10.9676 -1.2149 -3.9356 45 1 11.6009 -0.0150 -2.7835 46 1 13.2378 1.7151 -6.8343 47 1 8.0518 -2.0955 -3.2546 48 1 9.3123 -3.0806 -2.3957 49 1 8.0947 -3.2331 2.0575 50 1 8.0491 -1.5245 1.5657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:15 Heat of formation + Delta-G solvation = -55.485694 kcal Electronic energy + Delta-G solvation = -30255.359650 eV Core-core repulsion = 26091.876919 eV Total energy + Delta-G solvation = -4163.482731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63101 -40.33741 -39.60773 -36.94856 -36.21849 -35.86412 -33.49252 -32.23887 -31.39056 -29.28042 -28.79567 -27.77051 -26.49833 -26.07599 -25.96106 -24.00257 -22.95115 -20.79416 -20.24618 -19.63894 -18.79068 -17.83277 -17.69751 -16.96411 -16.68951 -16.55583 -16.46292 -16.09477 -15.92276 -15.17549 -14.94099 -14.59261 -14.44135 -14.39993 -14.02566 -13.89532 -13.49748 -13.40626 -13.19117 -13.07926 -12.95838 -12.90951 -12.67797 -12.66530 -12.47038 -12.29205 -12.08014 -11.81188 -11.51279 -11.42498 -11.01189 -10.92005 -10.34704 -10.30719 -10.00710 -9.94079 -9.81837 -9.56226 -9.28500 -9.18032 -9.13541 -8.60169 -8.57067 -6.08771 -4.07695 2.16410 2.19578 2.33556 2.68665 3.20895 3.30488 3.38351 3.45199 3.87274 4.01570 4.13632 4.18183 4.41592 4.43618 4.48806 4.55186 4.62701 4.83306 4.86757 4.92088 4.95940 4.98744 5.07950 5.08906 5.15118 5.21402 5.25225 5.26787 5.30960 5.35854 5.39861 5.42893 5.54026 5.60563 5.63030 5.85549 5.93559 5.97835 6.04640 6.50756 6.64232 6.72003 6.82913 7.01297 7.02601 7.33097 7.49461 7.68778 7.73773 7.76295 8.46670 8.94041 9.53854 11.04343 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.002412 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.247518 B =11603.698826 C =12994.763441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.076 3.924 4 C 0.520 3.480 5 O -0.540 6.540 6 C -0.155 4.155 7 C 0.125 3.875 8 N -0.602 5.602 9 C 0.101 3.899 10 C 0.064 3.936 11 C -0.023 4.023 12 N -0.460 5.460 13 C 0.034 3.966 14 C -0.002 4.002 15 C -0.524 4.524 16 H 0.070 0.930 17 C 0.068 3.932 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.024 3.976 24 O -0.327 6.327 25 C 0.050 3.950 26 C 0.490 3.510 27 O -0.543 6.543 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.012 0.988 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.132 0.868 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 -4.665 13.706 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.358 5.358 3 C -0.068 4.068 4 C 0.308 3.692 5 O -0.417 6.417 6 C -0.196 4.196 7 C 0.002 3.998 8 N -0.335 5.335 9 C -0.023 4.023 10 C 0.023 3.977 11 C -0.152 4.152 12 N -0.182 5.182 13 C -0.093 4.093 14 C -0.040 4.040 15 C -0.563 4.563 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.187 1.187 23 C -0.105 4.105 24 O -0.245 6.245 25 C -0.029 4.029 26 C 0.278 3.722 27 O -0.421 6.421 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.150 0.850 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.650 -5.306 14.401 25.729 hybrid contribution -0.122 0.122 -0.502 0.531 sum -20.772 -5.184 13.899 25.525 Atomic orbital electron populations 1.21699 0.79055 1.04320 1.01330 1.47747 1.07334 1.06542 1.74219 1.21854 0.97435 0.85106 1.02356 1.20545 0.89968 0.83247 0.75391 1.90709 1.70386 1.30877 1.49684 1.22023 0.92076 1.00559 1.04929 1.21220 0.78440 0.94920 1.05221 1.47538 1.06884 1.72967 1.06116 1.22073 0.91373 1.03466 0.85373 1.22570 0.91041 0.93679 0.90403 1.24353 0.94367 0.95061 1.01446 1.69108 1.26862 1.03738 1.18490 1.22734 1.00578 0.95105 0.90889 1.19437 0.91764 0.96849 0.95952 1.21075 1.01026 1.19094 1.15082 0.91211 1.24998 0.98431 0.95338 0.94577 1.69911 1.25919 1.36255 1.22131 0.86764 0.81487 0.81178 0.79848 1.20306 1.21427 1.18657 1.23863 0.96085 0.97354 0.93217 1.88168 1.57104 1.66099 1.13114 1.22780 0.87267 1.04440 0.88441 1.21037 0.91900 0.76019 0.83253 1.90743 1.67218 1.49697 1.34458 0.89434 0.92187 0.92135 0.92082 0.90730 0.90685 0.88291 0.88531 0.89413 0.88442 0.89214 0.89842 0.89582 0.90448 0.91417 0.94143 0.97000 0.95720 0.92687 0.89363 0.88342 0.85013 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.69 59.85 0.64 1.13 16 2 N -0.62 -4.67 3.27 -189.51 -0.62 -5.29 16 3 C 0.08 0.34 10.28 59.85 0.62 0.96 16 4 C 0.52 5.06 7.67 -10.99 -0.08 4.97 16 5 O -0.54 -7.10 15.31 5.55 0.09 -7.01 16 6 C -0.15 -1.22 4.57 -27.89 -0.13 -1.35 16 7 C 0.12 1.18 4.61 -4.04 -0.02 1.17 16 8 N -0.60 -5.82 2.84 -174.73 -0.50 -6.32 16 9 C 0.10 0.85 5.90 -4.44 -0.03 0.82 16 10 C 0.06 0.69 1.22 -91.03 -0.11 0.58 16 11 C -0.02 -0.26 6.86 -7.27 -0.05 -0.31 16 12 N -0.46 -7.15 6.33 -244.69 -1.55 -8.70 16 13 C 0.03 0.63 4.75 -3.83 -0.02 0.61 16 14 C 0.00 -0.05 4.37 -27.88 -0.12 -0.17 16 15 C -0.52 -14.52 9.66 -34.44 -0.33 -14.86 16 16 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 19 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.02 0.30 7.15 -7.28 -0.05 0.25 16 24 O -0.33 -3.94 10.68 -35.23 -0.38 -4.32 16 25 C 0.05 0.51 6.69 35.75 0.24 0.74 16 26 C 0.49 5.59 7.58 -11.72 -0.09 5.50 16 27 O -0.54 -7.80 16.28 5.56 0.09 -7.71 16 28 H 0.09 0.70 6.90 -51.93 -0.36 0.34 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 34 H 0.10 0.79 7.40 -51.93 -0.38 0.41 16 35 H 0.10 0.59 8.11 -51.92 -0.42 0.16 16 36 H 0.09 0.77 7.99 -51.93 -0.42 0.35 16 37 H 0.10 1.16 7.15 -51.93 -0.37 0.79 16 38 H 0.09 0.59 7.86 -51.93 -0.41 0.18 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.97 7.10 -51.93 -0.37 0.61 16 41 H 0.08 0.78 7.67 -51.93 -0.40 0.38 16 42 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 43 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 44 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 45 H 0.02 0.60 7.19 -51.93 -0.37 0.23 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 0.98 7.38 -51.93 -0.38 0.59 16 48 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 49 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.09 0.84 7.24 -51.92 -0.38 0.47 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -35.71 398.97 -8.71 -44.42 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -8.33 Total: -3.27 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 0.37 Total: 1.90 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -1.89 Total: -46.94 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.20 Total: -19.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.71 -8.71 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.061 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds