Wall clock time and date at job start Tue Mar 31 2020 22:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99845 * 2 1 4 4 C 1.34774 * 120.00016 * 180.02562 * 2 1 3 5 5 O 1.21284 * 120.00049 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99939 * 179.97438 * 4 2 1 7 7 C 1.52995 * 109.47036 * 180.02562 * 6 4 2 8 8 N 1.46506 * 109.46716 * 179.97438 * 7 6 4 9 9 C 1.46290 * 118.72450 * 270.03761 * 8 7 6 10 10 C 1.52454 * 109.56650 * 164.05723 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.35551 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42571 * 112.70892 * 44.96581 * 10 9 8 25 25 C 1.43063 * 112.97313 * 296.16735 * 24 10 9 26 26 C 1.33713 * 118.72327 * 90.00420 * 8 7 6 27 27 O 1.21281 * 118.36135 * 3.31885 * 26 8 7 28 28 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46445 * 299.99675 * 1 2 3 30 30 H 1.08997 * 109.47416 * 59.99956 * 1 2 3 31 31 H 1.09005 * 109.46943 * 270.00633 * 3 2 1 32 32 H 1.09003 * 109.47248 * 30.00273 * 3 2 1 33 33 H 1.08995 * 109.47247 * 150.00392 * 3 2 1 34 34 H 1.08994 * 109.47151 * 59.99807 * 6 4 2 35 35 H 1.09008 * 109.47322 * 300.00276 * 6 4 2 36 36 H 1.08996 * 109.47251 * 60.00370 * 7 6 4 37 37 H 1.08998 * 109.47277 * 300.00125 * 7 6 4 38 38 H 1.08997 * 109.47105 * 44.02186 * 9 8 7 39 39 H 1.09001 * 109.44349 * 284.07403 * 9 8 7 40 40 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 41 41 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 42 42 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 43 43 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 44 44 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 45 45 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 46 46 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 47 47 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 48 48 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 49 49 H 1.08998 * 109.35067 * 167.37378 * 25 24 10 50 50 H 1.09007 * 109.34082 * 287.06565 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0015 6 6 3.6460 -1.1672 -0.0011 7 6 4.1559 -2.6096 -0.0023 8 7 5.6210 -2.6095 -0.0035 9 6 6.3230 -2.6079 -1.2869 10 6 7.7798 -2.2135 -1.0715 11 6 8.0348 -0.7065 -1.1085 12 7 9.2721 -0.9922 -1.8607 13 6 9.4539 -0.0336 -2.9588 14 6 10.8532 -0.2000 -3.5547 15 6 11.0399 0.7839 -4.6809 16 1 10.2406 1.4605 -4.9449 17 6 12.2334 0.8245 -5.3700 18 7 12.3983 1.6868 -6.3493 19 14 13.6162 -0.3453 -4.9129 20 1 13.4882 -1.5959 -5.7033 21 1 14.9235 0.2947 -5.2072 22 1 13.5361 -0.6645 -3.4648 23 6 8.6309 -2.2317 -2.3413 24 8 8.3719 -2.8804 0.0408 25 6 7.7597 -2.5380 1.2877 26 6 6.2645 -2.6102 1.1686 27 8 5.6079 -2.6726 2.1864 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.3791 1.5834 -1.0277 32 1 1.6085 2.0284 0.5139 33 1 3.1499 1.1384 0.5137 34 1 4.0096 -0.6535 0.8888 35 1 4.0090 -0.6531 -0.8911 36 1 3.7923 -3.1228 -0.8925 37 1 3.7930 -3.1241 0.8875 38 1 5.8490 -1.8930 -1.9594 39 1 6.2779 -3.6044 -1.7263 40 1 8.2145 -0.2718 -0.1252 41 1 7.2931 -0.1543 -1.6856 42 1 9.3395 0.9812 -2.5778 43 1 8.7062 -0.2185 -3.7301 44 1 10.9676 -1.2149 -3.9356 45 1 11.6009 -0.0150 -2.7835 46 1 13.2378 1.7151 -6.8343 47 1 8.0518 -2.0955 -3.2546 48 1 9.3123 -3.0806 -2.3957 49 1 8.0947 -3.2331 2.0575 50 1 8.0491 -1.5245 1.5657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:14 Heat of formation + Delta-G solvation = -83.662113 kcal Electronic energy + Delta-G solvation = -30256.581472 eV Core-core repulsion = 26091.876919 eV Total energy + Delta-G solvation = -4164.704553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.51216 -41.08759 -40.50637 -37.94115 -36.97247 -36.55754 -35.39266 -33.32941 -32.73011 -30.46578 -29.40107 -28.45380 -27.50839 -27.04043 -26.86407 -24.85622 -24.24868 -22.13034 -21.41335 -20.27304 -19.66149 -18.96978 -18.65272 -18.40283 -17.40976 -17.38426 -17.18902 -16.90388 -16.74643 -16.37180 -16.12567 -15.83699 -15.58508 -15.13243 -15.09379 -14.85854 -14.58274 -14.37567 -14.20933 -13.94885 -13.81949 -13.66545 -13.47173 -13.42695 -13.36861 -13.29070 -13.22936 -12.85212 -12.72240 -12.58850 -12.19905 -12.06824 -11.81452 -11.60098 -11.44767 -11.36957 -11.18858 -11.05089 -10.74298 -10.46262 -9.97294 -9.74023 -9.70412 -8.28494 -6.31810 1.32964 1.37116 1.39999 1.50003 1.52697 1.58787 2.10272 2.37814 2.38060 2.96164 3.07848 3.19280 3.26950 3.54575 3.59455 3.83817 3.90664 4.05215 4.16101 4.19190 4.23450 4.33441 4.34921 4.40342 4.43700 4.49382 4.50229 4.53178 4.59381 4.62677 4.66293 4.74198 4.77150 4.82079 4.88154 4.90481 4.92682 5.01775 5.20858 5.26803 5.34838 5.43509 5.64340 5.66577 5.82656 6.12713 6.22463 6.24633 6.29436 6.76231 6.87913 7.04850 7.33608 8.87708 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.002412 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.247518 B =11603.698826 C =12994.763441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.624 5.624 3 C 0.070 3.930 4 C 0.512 3.488 5 O -0.585 6.585 6 C -0.144 4.144 7 C 0.128 3.872 8 N -0.595 5.595 9 C 0.103 3.897 10 C 0.075 3.925 11 C -0.019 4.019 12 N -0.488 5.488 13 C 0.048 3.952 14 C 0.001 3.999 15 C -0.529 4.529 16 H 0.038 0.962 17 C 0.007 3.993 18 N -0.949 5.949 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.253 1.253 23 C 0.020 3.980 24 O -0.346 6.346 25 C 0.053 3.947 26 C 0.488 3.512 27 O -0.580 6.580 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.266 0.734 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.142 0.858 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -4.831 14.064 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.356 5.356 3 C -0.072 4.072 4 C 0.301 3.699 5 O -0.466 6.466 6 C -0.184 4.184 7 C 0.005 3.995 8 N -0.327 5.327 9 C -0.019 4.019 10 C 0.034 3.966 11 C -0.148 4.148 12 N -0.210 5.210 13 C -0.080 4.080 14 C -0.036 4.036 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.190 4.190 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.176 1.176 23 C -0.109 4.109 24 O -0.264 6.264 25 C -0.026 4.026 26 C 0.277 3.723 27 O -0.460 6.460 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.075 0.925 47 H 0.126 0.874 48 H 0.108 0.892 49 H 0.160 0.840 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.041 -5.443 14.750 26.266 hybrid contribution -0.079 0.240 -0.617 0.667 sum -21.120 -5.203 14.133 25.940 Atomic orbital electron populations 1.21790 0.78627 1.03377 1.02964 1.47926 1.07948 1.06990 1.72784 1.22076 0.97700 0.83967 1.03474 1.20882 0.90711 0.83263 0.75013 1.90689 1.71279 1.32528 1.52060 1.21934 0.90815 0.99550 1.06127 1.21144 0.78212 0.95954 1.04189 1.47546 1.06958 1.71963 1.06219 1.22189 0.89739 1.05068 0.84953 1.22435 0.91910 0.92965 0.89289 1.24444 0.93028 0.96028 1.01252 1.69012 1.29877 1.04241 1.17863 1.22413 0.97672 0.95834 0.92038 1.19328 0.94781 0.95375 0.94167 1.21440 1.00058 1.19138 1.16088 0.94339 1.25920 1.01341 0.97135 0.94564 1.70050 1.26877 1.38387 1.23692 0.85711 0.78052 0.79145 0.80060 1.19109 1.21150 1.17632 1.23962 0.96325 0.95683 0.94916 1.88146 1.57806 1.66513 1.13943 1.22854 0.86293 1.05452 0.87989 1.21256 0.92301 0.75543 0.83207 1.90734 1.67936 1.51619 1.35748 0.91657 0.90622 0.90393 0.90879 0.89174 0.90109 0.88248 0.85873 0.88545 0.91437 0.86392 0.88657 0.89306 0.88200 0.92039 0.93266 0.96730 0.96864 0.92530 0.87426 0.89224 0.84034 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.69 127.77 1.37 2.22 16 2 N -0.62 -8.31 3.27 -871.88 -2.85 -11.17 16 3 C 0.07 0.44 10.28 127.77 1.31 1.75 16 4 C 0.51 9.49 7.67 87.66 0.67 10.16 16 5 O -0.58 -15.61 15.31 -3.04 -0.05 -15.65 16 6 C -0.14 -1.98 4.57 29.85 0.14 -1.85 16 7 C 0.13 2.26 4.61 86.38 0.40 2.66 16 8 N -0.60 -10.18 2.84 -825.69 -2.34 -12.52 16 9 C 0.10 1.37 5.90 86.24 0.51 1.88 16 10 C 0.08 1.39 1.22 -11.06 -0.01 1.37 16 11 C -0.02 -0.37 6.86 83.69 0.57 0.20 16 12 N -0.49 -13.99 6.33 -928.83 -5.88 -19.87 16 13 C 0.05 1.70 4.75 86.30 0.41 2.11 16 14 C 0.00 0.06 4.37 29.85 0.13 0.19 16 15 C -0.53 -29.45 9.66 25.60 0.25 -29.20 16 16 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 17 C 0.01 0.43 5.47 84.66 0.46 0.89 16 18 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 19 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 23 C 0.02 0.45 7.15 83.68 0.60 1.05 16 24 O -0.35 -7.57 10.68 -148.98 -1.59 -9.16 16 25 C 0.05 0.97 6.69 71.07 0.48 1.45 16 26 C 0.49 10.42 7.58 87.65 0.66 11.09 16 27 O -0.58 -16.42 16.28 -3.03 -0.05 -16.47 16 28 H 0.06 1.06 6.90 -2.39 -0.02 1.04 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.32 8.14 -2.38 -0.02 0.31 16 32 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 33 H 0.08 0.43 6.44 -2.39 -0.02 0.42 16 34 H 0.10 1.40 7.40 -2.39 -0.02 1.39 16 35 H 0.12 1.03 8.11 -2.38 -0.02 1.01 16 36 H 0.10 1.53 7.99 -2.39 -0.02 1.51 16 37 H 0.07 1.64 7.15 -2.39 -0.02 1.62 16 38 H 0.12 0.97 7.86 -2.39 -0.02 0.95 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.74 7.10 -2.38 -0.02 1.73 16 41 H 0.10 1.58 7.67 -2.39 -0.02 1.56 16 42 H 0.06 2.19 8.08 -2.38 -0.02 2.17 16 43 H 0.05 1.61 7.30 -2.39 -0.02 1.59 16 44 H 0.01 0.65 7.58 -2.38 -0.02 0.63 16 45 H 0.01 0.62 7.19 -2.39 -0.02 0.60 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.11 2.00 7.38 -2.39 -0.02 1.98 16 48 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.11 1.68 7.24 -2.38 -0.02 1.66 16 Total: -1.00 -79.36 398.97 -1.77 -81.13 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.87 Total: 9.77 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 7.95 Total: 5.97 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -10.78 Total: -101.70 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.69 Total: -41.29 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -79.36 -1.77 -81.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.537 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds