Wall clock time and date at job start Tue Mar 31 2020 23:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00024 * 2 1 4 4 O 1.21284 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00225 * 180.02562 * 3 2 1 6 6 N 1.46903 * 109.47115 * 179.97438 * 5 3 2 7 7 C 1.44336 * 111.00216 * 66.99189 * 6 5 3 8 8 C 1.53822 * 112.18771 * 215.87045 * 7 6 5 9 9 O 1.44197 * 112.87057 * 318.42980 * 8 7 6 10 10 C 1.40378 * 117.19238 * 317.86980 * 9 8 7 11 11 C 1.54329 * 108.81895 * 92.90399 * 10 9 8 12 12 C 1.54525 * 108.39824 * 158.48779 * 11 10 9 13 13 C 1.51315 * 104.22002 * 269.93779 * 12 11 10 14 14 O 1.21279 * 124.94863 * 164.08510 * 13 12 11 15 15 N 1.34430 * 110.10472 * 344.19964 * 13 12 11 16 16 C 1.46499 * 124.34805 * 179.54013 * 15 13 12 17 17 C 1.53004 * 109.47198 * 269.70287 * 16 15 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 C 1.46814 * 111.30064 * 359.27229 * 15 13 12 27 27 C 1.46546 * 111.81859 * 283.16308 * 11 10 9 28 28 H 1.09000 * 109.47144 * 300.00212 * 1 2 3 29 29 H 1.08997 * 109.47326 * 60.00974 * 1 2 3 30 30 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 31 31 H 0.97006 * 120.00308 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47258 * 59.99086 * 5 3 2 33 33 H 1.09005 * 109.47087 * 299.99298 * 5 3 2 34 34 H 1.09002 * 108.93655 * 336.56859 * 7 6 5 35 35 H 1.09003 * 108.94133 * 95.17259 * 7 6 5 36 36 H 1.08998 * 108.80084 * 79.29945 * 8 7 6 37 37 H 1.08997 * 108.80576 * 197.55218 * 8 7 6 38 38 H 1.08996 * 109.58109 * 333.10504 * 10 9 8 39 39 H 1.08996 * 109.58076 * 212.70322 * 10 9 8 40 40 H 1.09002 * 110.49376 * 28.79553 * 12 11 10 41 41 H 1.08999 * 110.49421 * 151.32271 * 12 11 10 42 42 H 1.09000 * 109.47602 * 149.69837 * 16 15 13 43 43 H 1.09007 * 109.47337 * 29.69552 * 16 15 13 44 44 H 1.09000 * 109.47211 * 59.99311 * 17 16 15 45 45 H 1.09007 * 109.46376 * 299.99853 * 17 16 15 46 46 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.24562 * 136.07946 * 26 15 13 48 48 H 1.08995 * 110.24974 * 257.99260 * 26 15 13 49 49 H 1.09003 * 108.90575 * 181.45226 * 27 11 10 50 50 H 1.08998 * 108.90627 * 300.07687 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 7 4.1354 2.5523 -0.0011 7 6 3.8118 3.2158 1.2392 8 6 3.4686 4.7008 1.0312 9 8 4.3427 5.3510 0.0866 10 6 5.7121 5.0537 0.1699 11 6 6.0274 3.8867 -0.7895 12 6 7.5382 3.9155 -1.1126 13 6 7.6391 4.7947 -2.3400 14 8 8.6634 5.2951 -2.7538 15 7 6.4276 4.9424 -2.9035 16 6 6.1659 5.7407 -4.1036 17 6 5.8257 7.1760 -3.6973 18 6 5.5560 7.9971 -4.9318 19 1 5.6211 7.5410 -5.9086 20 6 5.2321 9.3321 -4.8145 21 7 5.1531 9.8877 -3.6251 22 14 4.9054 10.3518 -6.3452 23 1 3.7621 9.7697 -7.0931 24 1 4.5798 11.7461 -5.9509 25 1 6.1138 10.3504 -7.2083 26 6 5.4015 4.1956 -2.1653 27 6 5.5938 2.5986 -0.2413 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 4.0089 0.6535 -0.8907 33 1 4.0095 0.6533 0.8893 34 1 2.9574 2.7158 1.6954 35 1 4.6649 3.1410 1.9136 36 1 2.4428 4.7770 0.6706 37 1 3.5411 5.2157 1.9891 38 1 5.9617 4.7648 1.1908 39 1 6.2942 5.9295 -0.1167 40 1 8.0976 4.3483 -0.2832 41 1 7.9005 2.9114 -1.3332 42 1 5.3278 5.3097 -4.6512 43 1 7.0519 5.7433 -4.7386 44 1 6.6639 7.6070 -3.1497 45 1 4.9397 7.1734 -3.0622 46 1 4.9256 10.8270 -3.5427 47 1 4.5057 4.8049 -2.0440 48 1 5.1595 3.2701 -2.6875 49 1 5.8616 1.8082 -0.9426 50 1 6.1115 2.4239 0.7018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274074289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:17 Heat of formation + Delta-G solvation = -91.114283 kcal Electronic energy + Delta-G solvation = -31401.105903 eV Core-core repulsion = 27236.078201 eV Total energy + Delta-G solvation = -4165.027703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04174 -39.96676 -38.54790 -36.30805 -35.89563 -34.85653 -34.21953 -32.55798 -30.30818 -29.98250 -28.48640 -27.19782 -26.52090 -25.96673 -24.85101 -23.76327 -21.48768 -21.17251 -20.60745 -19.75169 -18.79348 -17.53612 -17.04714 -16.56272 -16.42690 -16.05203 -15.91172 -15.65065 -15.42972 -15.00753 -14.70928 -14.48033 -14.36707 -14.10702 -14.08063 -13.69153 -13.48832 -13.08741 -12.93377 -12.73137 -12.65171 -12.39848 -12.30693 -12.12002 -11.91877 -11.69847 -11.37865 -11.16713 -11.12190 -10.94431 -10.81997 -10.60277 -10.35891 -10.09333 -9.82654 -9.72414 -9.48436 -9.29009 -9.27095 -9.00233 -8.61164 -8.23687 -7.82839 -5.88727 -3.91904 2.36182 2.67828 3.14367 3.41865 3.43686 3.45299 3.47938 3.77380 4.07275 4.36064 4.44073 4.56356 4.58184 4.60009 4.70122 4.81979 4.83599 4.88877 4.96170 5.10127 5.14969 5.23913 5.31737 5.33329 5.42499 5.44384 5.46865 5.55677 5.63171 5.72786 5.80608 5.93995 6.00157 6.06102 6.22003 6.23001 6.42704 6.57429 6.61665 6.76518 6.98663 7.11707 7.17067 7.60083 7.71689 7.82043 7.94357 8.04152 8.12920 8.47917 8.81367 9.14768 9.71040 11.22523 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.003085 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.206701 B = 9074.241606 C =10099.970330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.508 3.492 4 O -0.510 6.510 5 C 0.039 3.961 6 N -0.510 5.510 7 C 0.031 3.969 8 C 0.074 3.926 9 O -0.360 6.360 10 C 0.083 3.917 11 C -0.101 4.101 12 C -0.142 4.142 13 C 0.510 3.490 14 O -0.541 6.541 15 N -0.606 5.606 16 C 0.129 3.871 17 C 0.014 3.986 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.129 3.871 27 C 0.080 3.920 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.260 0.740 47 H 0.100 0.900 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -26.196 14.522 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.293 3.707 4 O -0.383 6.383 5 C -0.092 4.092 6 N -0.234 5.234 7 C -0.098 4.098 8 C -0.003 4.003 9 O -0.278 6.278 10 C 0.005 3.995 11 C -0.103 4.103 12 C -0.183 4.183 13 C 0.296 3.704 14 O -0.419 6.419 15 N -0.339 5.339 16 C 0.009 3.991 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C 0.006 3.994 27 C -0.047 4.047 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.734 -24.540 13.803 28.733 hybrid contribution 0.369 -0.544 0.114 0.667 sum -5.365 -25.083 13.917 29.183 Atomic orbital electron populations 1.21510 0.79444 1.02067 1.02497 1.45806 1.07846 1.08662 1.77239 1.20600 0.89996 0.83771 0.76340 1.90763 1.69855 1.30882 1.46785 1.22006 0.92471 0.91423 1.03276 1.60851 1.13732 1.12974 1.35805 1.22466 1.00510 0.97033 0.89760 1.22965 0.95294 0.89635 0.92378 1.87605 1.16352 1.66728 1.57099 1.22404 0.83781 0.96913 0.96443 1.21023 0.94681 0.96636 0.97916 1.22363 0.95612 1.01691 0.98672 1.20581 0.83647 0.81100 0.85040 1.90704 1.32144 1.51441 1.67586 1.48603 1.08099 1.48232 1.28938 1.21770 1.00280 0.93281 0.83814 1.19380 0.97297 0.88626 0.97126 1.21061 1.47520 0.94761 0.92699 0.92678 1.24986 0.95489 0.97887 0.95858 1.69973 1.48420 1.12390 1.22183 0.86646 0.78684 0.79209 0.83361 1.20234 1.21332 1.20261 1.21872 0.92669 0.96303 0.88559 1.20974 0.86291 0.97108 1.00368 0.92317 0.92046 0.90809 0.76702 0.87502 0.91921 0.90321 0.94520 0.88493 0.93419 0.93507 0.89083 0.88357 0.88357 0.91773 0.91380 0.96298 0.95958 0.92993 0.88191 0.92154 0.90319 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.85 0.64 1.12 16 2 N -0.74 -4.15 5.71 -67.08 -0.38 -4.53 16 3 C 0.51 4.49 7.19 -10.99 -0.08 4.42 16 4 O -0.51 -6.89 14.94 5.55 0.08 -6.81 16 5 C 0.04 0.26 5.32 -4.98 -0.03 0.24 16 6 N -0.51 -4.97 3.94 -240.66 -0.95 -5.92 16 7 C 0.03 0.31 4.31 -4.77 -0.02 0.29 16 8 C 0.07 0.94 7.02 37.59 0.26 1.20 16 9 O -0.36 -5.78 8.72 -33.81 -0.29 -6.08 16 10 C 0.08 1.14 5.15 37.85 0.19 1.33 16 11 C -0.10 -1.24 0.63 -155.42 -0.10 -1.34 16 12 C -0.14 -1.81 5.78 -26.78 -0.15 -1.97 16 13 C 0.51 9.75 7.88 -10.84 -0.09 9.67 16 14 O -0.54 -12.75 17.59 5.56 0.10 -12.65 16 15 N -0.61 -11.76 2.93 -172.48 -0.51 -12.26 16 16 C 0.13 2.92 5.88 -4.04 -0.02 2.90 16 17 C 0.01 0.38 5.30 -27.88 -0.15 0.23 16 18 C -0.52 -15.51 9.11 -34.44 -0.31 -15.83 16 19 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -28.11 13.29 55.43 0.74 -27.37 16 22 Si 0.89 22.61 29.54 -169.99 -5.02 17.58 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.13 2.03 6.11 -3.20 -0.02 2.01 16 27 C 0.08 0.70 3.75 -6.36 -0.02 0.68 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.40 0.90 8.83 -40.82 -0.36 0.54 16 32 H 0.11 0.53 7.79 -51.93 -0.40 0.12 16 33 H 0.06 0.27 8.11 -51.93 -0.42 -0.15 16 34 H 0.08 0.77 6.19 -51.93 -0.32 0.45 16 35 H 0.04 0.31 6.73 -51.93 -0.35 -0.04 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.52 7.17 -51.93 -0.37 0.15 16 39 H 0.09 1.50 7.84 -51.93 -0.41 1.09 16 40 H 0.10 1.14 7.85 -51.93 -0.41 0.73 16 41 H 0.10 0.99 7.94 -51.93 -0.41 0.58 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.61 7.92 -51.93 -0.41 1.19 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 47 H 0.10 1.87 6.65 -51.93 -0.35 1.52 16 48 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 49 H 0.08 0.57 7.61 -51.93 -0.39 0.17 16 50 H 0.05 0.34 7.40 -51.93 -0.38 -0.05 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -39.14 394.73 -8.61 -47.74 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.33 Total: -2.30 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.01 Total: 6.65 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -1.10 Total: -50.09 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.11 Total: -25.54 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.14 -8.61 -47.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274074289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.371 kcal (2) G-P(sol) polarization free energy of solvation -39.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds