Wall clock time and date at job start Tue Mar 31 2020 23:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00024 * 2 1 4 4 O 1.21284 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00225 * 180.02562 * 3 2 1 6 6 N 1.46903 * 109.47115 * 179.97438 * 5 3 2 7 7 C 1.44336 * 111.00216 * 66.99189 * 6 5 3 8 8 C 1.53822 * 112.18771 * 215.87045 * 7 6 5 9 9 O 1.44197 * 112.87057 * 318.42980 * 8 7 6 10 10 C 1.40378 * 117.19238 * 317.86980 * 9 8 7 11 11 C 1.54329 * 108.81895 * 92.90399 * 10 9 8 12 12 C 1.54525 * 108.39824 * 158.48779 * 11 10 9 13 13 C 1.51315 * 104.22002 * 269.93779 * 12 11 10 14 14 O 1.21279 * 124.94863 * 164.08510 * 13 12 11 15 15 N 1.34430 * 110.10472 * 344.19964 * 13 12 11 16 16 C 1.46499 * 124.34805 * 179.54013 * 15 13 12 17 17 C 1.53004 * 109.47198 * 269.70287 * 16 15 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 C 1.46814 * 111.30064 * 359.27229 * 15 13 12 27 27 C 1.46546 * 111.81859 * 283.16308 * 11 10 9 28 28 H 1.09000 * 109.47144 * 300.00212 * 1 2 3 29 29 H 1.08997 * 109.47326 * 60.00974 * 1 2 3 30 30 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 31 31 H 0.97006 * 120.00308 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47258 * 59.99086 * 5 3 2 33 33 H 1.09005 * 109.47087 * 299.99298 * 5 3 2 34 34 H 1.09002 * 108.93655 * 336.56859 * 7 6 5 35 35 H 1.09003 * 108.94133 * 95.17259 * 7 6 5 36 36 H 1.08998 * 108.80084 * 79.29945 * 8 7 6 37 37 H 1.08997 * 108.80576 * 197.55218 * 8 7 6 38 38 H 1.08996 * 109.58109 * 333.10504 * 10 9 8 39 39 H 1.08996 * 109.58076 * 212.70322 * 10 9 8 40 40 H 1.09002 * 110.49376 * 28.79553 * 12 11 10 41 41 H 1.08999 * 110.49421 * 151.32271 * 12 11 10 42 42 H 1.09000 * 109.47602 * 149.69837 * 16 15 13 43 43 H 1.09007 * 109.47337 * 29.69552 * 16 15 13 44 44 H 1.09000 * 109.47211 * 59.99311 * 17 16 15 45 45 H 1.09007 * 109.46376 * 299.99853 * 17 16 15 46 46 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.24562 * 136.07946 * 26 15 13 48 48 H 1.08995 * 110.24974 * 257.99260 * 26 15 13 49 49 H 1.09003 * 108.90575 * 181.45226 * 27 11 10 50 50 H 1.08998 * 108.90627 * 300.07687 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 7 4.1354 2.5523 -0.0011 7 6 3.8118 3.2158 1.2392 8 6 3.4686 4.7008 1.0312 9 8 4.3427 5.3510 0.0866 10 6 5.7121 5.0537 0.1699 11 6 6.0274 3.8867 -0.7895 12 6 7.5382 3.9155 -1.1126 13 6 7.6391 4.7947 -2.3400 14 8 8.6634 5.2951 -2.7538 15 7 6.4276 4.9424 -2.9035 16 6 6.1659 5.7407 -4.1036 17 6 5.8257 7.1760 -3.6973 18 6 5.5560 7.9971 -4.9318 19 1 5.6211 7.5410 -5.9086 20 6 5.2321 9.3321 -4.8145 21 7 5.1531 9.8877 -3.6251 22 14 4.9054 10.3518 -6.3452 23 1 3.7621 9.7697 -7.0931 24 1 4.5798 11.7461 -5.9509 25 1 6.1138 10.3504 -7.2083 26 6 5.4015 4.1956 -2.1653 27 6 5.5938 2.5986 -0.2413 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 4.0089 0.6535 -0.8907 33 1 4.0095 0.6533 0.8893 34 1 2.9574 2.7158 1.6954 35 1 4.6649 3.1410 1.9136 36 1 2.4428 4.7770 0.6706 37 1 3.5411 5.2157 1.9891 38 1 5.9617 4.7648 1.1908 39 1 6.2942 5.9295 -0.1167 40 1 8.0976 4.3483 -0.2832 41 1 7.9005 2.9114 -1.3332 42 1 5.3278 5.3097 -4.6512 43 1 7.0519 5.7433 -4.7386 44 1 6.6639 7.6070 -3.1497 45 1 4.9397 7.1734 -3.0622 46 1 4.9256 10.8270 -3.5427 47 1 4.5057 4.8049 -2.0440 48 1 5.1595 3.2701 -2.6875 49 1 5.8616 1.8082 -0.9426 50 1 6.1115 2.4239 0.7018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274074289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:16 Heat of formation + Delta-G solvation = -123.592640 kcal Electronic energy + Delta-G solvation = -31402.514271 eV Core-core repulsion = 27236.078201 eV Total energy + Delta-G solvation = -4166.436070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.13926 -40.79016 -39.68385 -37.38708 -37.15220 -36.03098 -35.44603 -34.47702 -31.79873 -30.96792 -29.64986 -28.12695 -27.53547 -27.31886 -26.16772 -24.97221 -23.21955 -22.23483 -21.23663 -20.79352 -20.30575 -18.69398 -18.17930 -17.90305 -17.34559 -17.25924 -17.09075 -16.67008 -16.57058 -16.35000 -16.10411 -15.86594 -15.39724 -15.08401 -14.94328 -14.79148 -14.55699 -14.37856 -14.25751 -13.97566 -13.94026 -13.79345 -13.21966 -13.10289 -13.03766 -12.96330 -12.83481 -12.65450 -12.50474 -12.29562 -12.06429 -11.98036 -11.89900 -11.73883 -11.43685 -11.37534 -10.85454 -10.69204 -10.59266 -10.35333 -10.02381 -9.51608 -9.20442 -8.22709 -6.36908 1.36800 1.42477 1.49829 1.64666 1.76826 2.16072 2.24207 2.42389 2.72787 3.09688 3.16345 3.42321 3.51865 3.64557 3.87923 3.93143 4.05979 4.13142 4.28364 4.31719 4.38695 4.49369 4.49919 4.52102 4.52704 4.62531 4.64472 4.67557 4.71296 4.73246 4.77415 4.81864 4.86228 4.89313 4.99656 5.01243 5.15603 5.20683 5.33994 5.47862 5.54283 5.60485 5.83169 6.01562 6.12089 6.15077 6.38857 6.58996 6.70656 6.78478 7.26096 7.32883 7.42859 8.89435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.003085 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.206701 B = 9074.241606 C =10099.970330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.499 3.501 4 O -0.569 6.569 5 C 0.045 3.955 6 N -0.540 5.540 7 C 0.043 3.957 8 C 0.070 3.930 9 O -0.400 6.400 10 C 0.078 3.922 11 C -0.080 4.080 12 C -0.122 4.122 13 C 0.494 3.506 14 O -0.596 6.596 15 N -0.615 5.615 16 C 0.142 3.858 17 C 0.030 3.970 18 C -0.548 4.548 19 H 0.067 0.933 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.974 3.026 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.128 3.872 27 C 0.080 3.920 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.419 0.581 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.116 0.884 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.057 0.943 44 H -0.028 1.028 45 H -0.009 1.009 46 H 0.264 0.736 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -30.047 14.938 33.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.381 5.381 3 C 0.286 3.714 4 O -0.447 6.447 5 C -0.085 4.085 6 N -0.264 5.264 7 C -0.086 4.086 8 C -0.007 4.007 9 O -0.318 6.318 10 C 0.001 3.999 11 C -0.082 4.082 12 C -0.162 4.162 13 C 0.284 3.716 14 O -0.478 6.478 15 N -0.347 5.347 16 C 0.020 3.980 17 C -0.008 4.008 18 C -0.587 4.587 19 H 0.085 0.915 20 C -0.200 4.200 21 N -0.572 5.572 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.191 1.191 26 C 0.007 3.993 27 C -0.047 4.047 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.134 0.866 41 H 0.162 0.838 42 H 0.100 0.900 43 H 0.075 0.925 44 H -0.010 1.010 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.128 0.872 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.211 -28.492 14.243 32.278 hybrid contribution 0.109 0.689 0.014 0.698 sum -5.101 -27.803 14.257 31.660 Atomic orbital electron populations 1.21559 0.79560 1.03815 1.00870 1.45727 1.07938 1.08868 1.75547 1.21223 0.91324 0.83568 0.75309 1.90757 1.71159 1.33053 1.49774 1.22097 0.90331 0.89975 1.06118 1.60620 1.14572 1.15232 1.36019 1.22279 1.01419 0.94398 0.90481 1.23045 0.93369 0.92476 0.91768 1.87556 1.17669 1.68131 1.58488 1.22433 0.82496 0.96178 0.98821 1.21016 0.93914 0.98139 0.95131 1.22357 0.96156 1.02346 0.95372 1.21799 0.82430 0.81016 0.86390 1.90661 1.33910 1.53783 1.69399 1.48705 1.09735 1.47936 1.28291 1.21300 1.00222 0.90975 0.85491 1.19128 0.93885 0.91966 0.95835 1.21536 1.47837 0.95713 0.93564 0.91461 1.26090 0.94761 0.99371 0.99768 1.70142 1.49093 1.12939 1.25060 0.85379 0.79232 0.77115 0.78565 1.18526 1.20686 1.19105 1.22017 0.90601 0.95838 0.90887 1.20996 0.86011 0.95078 1.02575 0.93579 0.94157 0.87305 0.74387 0.85014 0.88230 0.90391 0.92002 0.91400 0.92331 0.90006 0.93320 0.86622 0.83798 0.90035 0.92478 1.00974 0.99088 0.92728 0.92000 0.89530 0.87214 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.70 127.77 1.37 2.20 16 2 N -0.73 -6.31 5.71 -484.53 -2.77 -9.08 16 3 C 0.50 7.85 7.19 87.66 0.63 8.48 16 4 O -0.57 -15.59 14.94 -3.04 -0.05 -15.63 16 5 C 0.04 0.40 5.32 85.56 0.46 0.85 16 6 N -0.54 -8.76 3.94 -915.32 -3.61 -12.36 16 7 C 0.04 0.76 4.31 87.06 0.37 1.13 16 8 C 0.07 1.82 7.02 72.26 0.51 2.33 16 9 O -0.40 -13.52 8.72 -143.88 -1.26 -14.78 16 10 C 0.08 2.15 5.15 72.43 0.37 2.52 16 11 C -0.08 -1.78 0.63 -52.77 -0.03 -1.82 16 12 C -0.12 -2.75 5.78 30.56 0.18 -2.57 16 13 C 0.49 19.06 7.88 87.91 0.69 19.75 16 14 O -0.60 -29.06 17.59 -3.03 -0.05 -29.12 16 15 N -0.62 -24.56 2.93 -818.20 -2.40 -26.96 16 16 C 0.14 6.78 5.88 86.38 0.51 7.29 16 17 C 0.03 1.79 5.30 29.85 0.16 1.95 16 18 C -0.55 -33.92 9.11 25.60 0.23 -33.68 16 19 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 21 N -0.93 -61.46 13.29 21.45 0.28 -61.18 16 22 Si 0.97 47.20 29.54 68.60 2.03 49.23 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.13 4.01 6.11 86.75 0.53 4.54 16 27 C 0.08 0.99 3.75 84.12 0.32 1.31 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.42 0.27 8.83 -92.70 -0.82 -0.55 16 32 H 0.13 0.54 7.79 -2.39 -0.02 0.52 16 33 H 0.10 0.22 8.11 -2.38 -0.02 0.20 16 34 H 0.08 1.39 6.19 -2.39 -0.01 1.37 16 35 H 0.06 0.77 6.73 -2.39 -0.02 0.75 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.62 7.17 -2.39 -0.02 1.61 16 39 H 0.05 1.71 7.84 -2.39 -0.02 1.70 16 40 H 0.12 2.31 7.85 -2.39 -0.02 2.30 16 41 H 0.14 2.05 7.94 -2.39 -0.02 2.03 16 42 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.06 2.82 7.92 -2.38 -0.02 2.81 16 44 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 45 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 46 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 47 H 0.06 2.45 6.65 -2.38 -0.02 2.43 16 48 H 0.09 2.25 7.96 -2.39 -0.02 2.23 16 49 H 0.11 0.79 7.61 -2.39 -0.02 0.77 16 50 H 0.08 0.57 7.40 -2.39 -0.02 0.55 16 Total: -1.00 -96.00 394.73 -0.95 -96.94 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.12 Total: 8.31 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 6.75 Total: 14.62 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -8.49 Total: -109.58 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -1.35 Total: -59.53 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -96.00 -0.95 -96.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274074289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.649 kcal (2) G-P(sol) polarization free energy of solvation -95.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds