Wall clock time and date at job start Tue Mar 31 2020 22:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00350 * 2 1 4 4 C 1.50708 * 109.46628 * 66.04414 * 3 2 1 5 5 O 1.21291 * 120.00222 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99482 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00148 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99377 * 0.02562 * 7 6 4 9 9 C 1.38951 * 120.00587 * 179.97438 * 7 6 4 10 10 N 1.31411 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47326 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47343 * 119.99963 * 11 9 7 14 14 H 1.48501 * 109.47059 * 239.99769 * 11 9 7 15 15 C 1.46904 * 111.00255 * 236.04576 * 2 1 3 16 16 C 1.53004 * 109.47072 * 288.22380 * 15 2 1 17 17 H 1.09003 * 109.87123 * 54.65312 * 16 15 2 18 18 C 1.54321 * 109.88263 * 293.48131 * 16 15 2 19 19 C 1.55155 * 102.93951 * 218.38727 * 18 16 15 20 20 C 1.54686 * 101.67630 * 35.33797 * 19 18 16 21 21 N 1.47022 * 109.88090 * 175.66959 * 16 15 2 22 22 C 1.34773 * 125.64892 * 298.32109 * 21 16 15 23 23 O 1.21280 * 120.00366 * 354.89550 * 22 21 16 24 24 C 1.50700 * 119.99823 * 175.16869 * 22 21 16 25 25 H 1.09000 * 110.75161 * 61.74597 * 24 22 21 26 26 C 1.55310 * 110.84835 * 185.43962 * 24 22 21 27 27 C 1.54950 * 100.93994 * 152.32181 * 26 24 22 28 28 O 1.43640 * 105.13834 * 323.55790 * 27 26 24 29 29 C 1.43247 * 109.97241 * 24.42814 * 28 27 26 30 30 H 1.09004 * 109.47324 * 180.96171 * 1 2 3 31 31 H 1.08997 * 109.47287 * 300.96407 * 1 2 3 32 32 H 1.09003 * 109.46808 * 60.96550 * 1 2 3 33 33 H 1.08992 * 109.47343 * 186.03945 * 3 2 1 34 34 H 1.08996 * 109.47003 * 306.04653 * 3 2 1 35 35 H 0.97006 * 120.00637 * 359.97438 * 6 4 3 36 36 H 0.96991 * 120.00392 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47166 * 168.22792 * 15 2 1 38 38 H 1.09000 * 109.47086 * 48.22548 * 15 2 1 39 39 H 1.08998 * 110.72289 * 336.75126 * 18 16 15 40 40 H 1.09009 * 110.71946 * 99.85014 * 18 16 15 41 41 H 1.09003 * 111.00350 * 153.57743 * 19 18 16 42 42 H 1.08997 * 111.00816 * 277.38773 * 19 18 16 43 43 H 1.09012 * 110.39122 * 204.36381 * 20 19 18 44 44 H 1.08998 * 110.23753 * 82.11369 * 20 19 18 45 45 H 1.08996 * 111.12369 * 270.24241 * 26 24 22 46 46 H 1.08997 * 111.12269 * 34.40624 * 26 24 22 47 47 H 1.08997 * 110.30733 * 204.63714 * 27 26 24 48 48 H 1.08994 * 110.38871 * 82.51581 * 27 26 24 49 49 H 1.09006 * 109.82709 * 238.77387 * 29 28 27 50 50 H 1.08991 * 109.90502 * 117.84374 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0045 1.4455 2.1408 6 7 2.0180 3.3201 1.5234 7 6 1.6914 3.9350 2.7044 8 1 1.1291 3.3991 3.4547 9 6 2.0848 5.2473 2.9365 10 7 2.7695 5.8992 2.0238 11 14 1.6404 6.0848 4.5459 12 1 0.8720 5.1425 5.3987 13 1 2.8820 6.4918 5.2516 14 1 0.8132 7.2861 4.2669 15 6 1.9955 -0.7660 -1.1376 16 6 1.7571 -2.2588 -0.9014 17 1 0.6998 -2.4389 -0.7068 18 6 2.6040 -2.7427 0.2945 19 6 3.0697 -4.1521 -0.1572 20 6 3.2680 -3.9440 -1.6771 21 7 2.1867 -3.0263 -2.0795 22 6 1.6730 -2.9136 -3.3204 23 8 0.7168 -2.1942 -3.5179 24 6 2.2830 -3.6863 -4.4614 25 1 2.2094 -4.7593 -4.2842 26 6 1.6183 -3.2975 -5.8101 27 6 2.7756 -3.5807 -6.8007 28 8 3.9705 -3.1994 -6.1006 29 6 3.7514 -3.2662 -4.6865 30 1 -0.3634 -1.0275 0.0172 31 1 -0.3634 0.5287 0.8812 32 1 -0.3633 0.4988 -0.8986 33 1 3.0797 1.3443 -0.1081 34 1 1.5612 1.9273 -0.8309 35 1 2.5235 3.8013 0.8496 36 1 3.0438 6.8154 2.1855 37 1 3.0649 -0.5801 -1.2370 38 1 1.4866 -0.4568 -2.0505 39 1 3.4595 -2.0860 0.4521 40 1 1.9962 -2.8053 1.1973 41 1 4.0067 -4.4277 0.3267 42 1 2.2989 -4.8985 0.0349 43 1 3.1762 -4.8931 -2.2056 44 1 4.2408 -3.4928 -1.8722 45 1 0.7570 -3.9314 -6.0207 46 1 1.3404 -2.2437 -5.8216 47 1 2.6573 -2.9799 -7.7024 48 1 2.8076 -4.6403 -7.0545 49 1 3.9292 -2.2886 -4.2383 50 1 4.4194 -4.0037 -4.2419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275094335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:08 Heat of formation + Delta-G solvation = -102.428625 kcal Electronic energy + Delta-G solvation = -30404.876187 eV Core-core repulsion = 26239.357857 eV Total energy + Delta-G solvation = -4165.518330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.95588 -39.38789 -38.46741 -37.60620 -36.06105 -33.82931 -32.93179 -31.75049 -31.22952 -30.54152 -29.47333 -27.73542 -26.24172 -24.90444 -24.27945 -22.97704 -22.27952 -21.96433 -20.60907 -19.23872 -18.95507 -17.88242 -17.75036 -16.94284 -16.81263 -16.29305 -15.78690 -15.24792 -15.13896 -15.09992 -14.61825 -14.53744 -14.17019 -13.99874 -13.73423 -13.66079 -13.53288 -13.33922 -13.22098 -12.92711 -12.48473 -12.40293 -12.03598 -11.90520 -11.76401 -11.64309 -11.50339 -11.46451 -11.33565 -11.24131 -11.22563 -10.92622 -10.86024 -10.72314 -10.32608 -10.20626 -10.16940 -9.87053 -9.46244 -8.95236 -8.37765 -7.94822 -7.79908 -6.39300 -3.79940 2.29105 2.58697 3.17776 3.28123 3.35294 3.40519 3.83174 3.93910 4.03114 4.14930 4.26617 4.37111 4.43429 4.52182 4.63958 4.69613 4.76632 4.79889 4.91947 5.08187 5.12000 5.21487 5.22915 5.27046 5.27600 5.34430 5.35890 5.44444 5.51300 5.64166 5.70563 5.72348 5.76383 5.79300 5.87063 5.94494 6.00279 6.10297 6.17024 6.25797 6.32287 6.49633 6.62859 7.21387 7.32318 7.42273 7.57725 7.87303 8.09401 8.64759 9.20874 9.57623 10.09530 10.78679 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002222 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.064057 B =12596.499757 C =13195.589526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.047 3.953 4 C 0.446 3.554 5 O -0.577 6.577 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.045 3.955 16 C 0.143 3.857 17 H 0.079 0.921 18 C -0.111 4.111 19 C -0.137 4.137 20 C 0.097 3.903 21 N -0.614 5.614 22 C 0.538 3.462 23 O -0.528 6.528 24 C -0.144 4.144 25 H 0.110 0.890 26 C -0.136 4.136 27 C 0.050 3.950 28 O -0.380 6.380 29 C 0.066 3.934 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.015 0.985 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -22.601 -14.549 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.236 5.236 3 C -0.085 4.085 4 C 0.232 3.768 5 O -0.461 6.461 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.084 4.084 16 C 0.040 3.960 17 H 0.097 0.903 18 C -0.149 4.149 19 C -0.175 4.175 20 C -0.026 4.026 21 N -0.349 5.349 22 C 0.326 3.674 23 O -0.404 6.404 24 C -0.165 4.165 25 H 0.128 0.872 26 C -0.174 4.174 27 C -0.026 4.026 28 O -0.299 6.299 29 C -0.011 4.011 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.764 -22.577 -13.822 26.616 hybrid contribution -0.258 1.088 -0.315 1.162 sum 2.506 -21.488 -14.137 25.843 Atomic orbital electron populations 1.22562 0.86679 1.01425 1.01833 1.61503 1.08743 1.12693 1.40700 1.21869 1.00489 0.88932 0.97162 1.19714 0.85338 0.82906 0.88862 1.90474 1.43816 1.64680 1.47123 1.41879 1.49520 1.10767 1.18086 1.19741 1.32747 0.95418 0.94710 0.87870 1.25261 0.96900 0.96681 0.99222 1.69619 1.38210 1.12179 1.34397 0.85806 0.78178 0.79026 0.81363 1.19233 1.20777 1.20816 1.22428 1.00164 0.92917 0.92922 1.21568 0.99654 0.90775 0.84029 0.90298 1.22562 1.00361 0.94879 0.97142 1.22798 1.02488 0.98320 0.93867 1.22381 0.90683 0.93188 0.96378 1.48607 1.37628 1.40263 1.08360 1.19821 0.83227 0.82209 0.82149 1.90741 1.26629 1.39911 1.83132 1.22896 0.96883 1.01703 0.95024 0.87187 1.23180 0.98401 1.04515 0.91299 1.23444 0.83239 1.00123 0.95821 1.88433 1.34970 1.89693 1.16845 1.23068 0.93282 1.01884 0.82914 0.92403 0.88539 0.96617 0.89558 0.93529 0.77520 0.91961 0.91083 0.93805 0.89930 0.89334 0.89606 0.90718 0.90722 0.90999 0.89272 0.88803 0.89226 0.91878 0.90788 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.03 60.06 0.54 0.94 16 2 N -0.51 -8.77 4.24 -244.37 -1.04 -9.81 16 3 C 0.05 0.87 5.44 -4.97 -0.03 0.84 16 4 C 0.45 10.63 7.50 -10.98 -0.08 10.55 16 5 O -0.58 -15.47 13.89 5.55 0.08 -15.40 16 6 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.04 0.64 4.36 -3.82 -0.02 0.62 16 16 C 0.14 1.71 2.89 -66.95 -0.19 1.52 16 17 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 18 C -0.11 -1.13 6.28 -24.90 -0.16 -1.29 16 19 C -0.14 -0.93 7.07 -24.70 -0.17 -1.11 16 20 C 0.10 0.64 5.68 -2.65 -0.02 0.62 16 21 N -0.61 -6.17 3.06 -163.15 -0.50 -6.67 16 22 C 0.54 6.07 6.79 -10.99 -0.07 6.00 16 23 O -0.53 -8.09 14.95 5.56 0.08 -8.00 16 24 C -0.14 -1.14 2.68 -89.82 -0.24 -1.38 16 25 H 0.11 0.63 7.88 -51.93 -0.41 0.22 16 26 C -0.14 -1.08 6.23 -24.48 -0.15 -1.23 16 27 C 0.05 0.35 7.78 38.19 0.30 0.65 16 28 O -0.38 -3.67 11.36 -35.23 -0.40 -4.07 16 29 C 0.07 0.52 6.44 37.88 0.24 0.76 16 30 H 0.06 0.91 6.51 -51.93 -0.34 0.57 16 31 H 0.10 1.98 5.86 -51.93 -0.30 1.68 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 1.44 7.86 -51.93 -0.41 1.03 16 34 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 38 H 0.04 0.70 6.82 -51.93 -0.35 0.35 16 39 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 40 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.35 7.59 -51.92 -0.39 -0.05 16 44 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 50 H 0.08 0.45 7.94 -51.93 -0.41 0.03 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -33.61 394.42 -8.67 -42.29 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.19 Total: 8.67 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.29 Total: 9.52 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.87 Total: -55.13 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.24 Total: -27.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.61 -8.67 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275094335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.142 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds