Wall clock time and date at job start Tue Mar 31 2020 22:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00350 * 2 1 4 4 C 1.50708 * 109.46628 * 66.04414 * 3 2 1 5 5 O 1.21291 * 120.00222 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99482 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00148 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99377 * 0.02562 * 7 6 4 9 9 C 1.38951 * 120.00587 * 179.97438 * 7 6 4 10 10 N 1.31411 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47326 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47343 * 119.99963 * 11 9 7 14 14 H 1.48501 * 109.47059 * 239.99769 * 11 9 7 15 15 C 1.46904 * 111.00255 * 236.04576 * 2 1 3 16 16 C 1.53004 * 109.47072 * 288.22380 * 15 2 1 17 17 H 1.09003 * 109.87123 * 54.65312 * 16 15 2 18 18 C 1.54321 * 109.88263 * 293.48131 * 16 15 2 19 19 C 1.55155 * 102.93951 * 218.38727 * 18 16 15 20 20 C 1.54686 * 101.67630 * 35.33797 * 19 18 16 21 21 N 1.47022 * 109.88090 * 175.66959 * 16 15 2 22 22 C 1.34773 * 125.64892 * 298.32109 * 21 16 15 23 23 O 1.21280 * 120.00366 * 354.89550 * 22 21 16 24 24 C 1.50700 * 119.99823 * 175.16869 * 22 21 16 25 25 H 1.09000 * 110.75161 * 61.74597 * 24 22 21 26 26 C 1.55310 * 110.84835 * 185.43962 * 24 22 21 27 27 C 1.54950 * 100.93994 * 152.32181 * 26 24 22 28 28 O 1.43640 * 105.13834 * 323.55790 * 27 26 24 29 29 C 1.43247 * 109.97241 * 24.42814 * 28 27 26 30 30 H 1.09004 * 109.47324 * 180.96171 * 1 2 3 31 31 H 1.08997 * 109.47287 * 300.96407 * 1 2 3 32 32 H 1.09003 * 109.46808 * 60.96550 * 1 2 3 33 33 H 1.08992 * 109.47343 * 186.03945 * 3 2 1 34 34 H 1.08996 * 109.47003 * 306.04653 * 3 2 1 35 35 H 0.97006 * 120.00637 * 359.97438 * 6 4 3 36 36 H 0.96991 * 120.00392 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47166 * 168.22792 * 15 2 1 38 38 H 1.09000 * 109.47086 * 48.22548 * 15 2 1 39 39 H 1.08998 * 110.72289 * 336.75126 * 18 16 15 40 40 H 1.09009 * 110.71946 * 99.85014 * 18 16 15 41 41 H 1.09003 * 111.00350 * 153.57743 * 19 18 16 42 42 H 1.08997 * 111.00816 * 277.38773 * 19 18 16 43 43 H 1.09012 * 110.39122 * 204.36381 * 20 19 18 44 44 H 1.08998 * 110.23753 * 82.11369 * 20 19 18 45 45 H 1.08996 * 111.12369 * 270.24241 * 26 24 22 46 46 H 1.08997 * 111.12269 * 34.40624 * 26 24 22 47 47 H 1.08997 * 110.30733 * 204.63714 * 27 26 24 48 48 H 1.08994 * 110.38871 * 82.51581 * 27 26 24 49 49 H 1.09006 * 109.82709 * 238.77387 * 29 28 27 50 50 H 1.08991 * 109.90502 * 117.84374 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 8 1.0045 1.4455 2.1408 6 7 2.0180 3.3201 1.5234 7 6 1.6914 3.9350 2.7044 8 1 1.1291 3.3991 3.4547 9 6 2.0848 5.2473 2.9365 10 7 2.7695 5.8992 2.0238 11 14 1.6404 6.0848 4.5459 12 1 0.8720 5.1425 5.3987 13 1 2.8820 6.4918 5.2516 14 1 0.8132 7.2861 4.2669 15 6 1.9955 -0.7660 -1.1376 16 6 1.7571 -2.2588 -0.9014 17 1 0.6998 -2.4389 -0.7068 18 6 2.6040 -2.7427 0.2945 19 6 3.0697 -4.1521 -0.1572 20 6 3.2680 -3.9440 -1.6771 21 7 2.1867 -3.0263 -2.0795 22 6 1.6730 -2.9136 -3.3204 23 8 0.7168 -2.1942 -3.5179 24 6 2.2830 -3.6863 -4.4614 25 1 2.2094 -4.7593 -4.2842 26 6 1.6183 -3.2975 -5.8101 27 6 2.7756 -3.5807 -6.8007 28 8 3.9705 -3.1994 -6.1006 29 6 3.7514 -3.2662 -4.6865 30 1 -0.3634 -1.0275 0.0172 31 1 -0.3634 0.5287 0.8812 32 1 -0.3633 0.4988 -0.8986 33 1 3.0797 1.3443 -0.1081 34 1 1.5612 1.9273 -0.8309 35 1 2.5235 3.8013 0.8496 36 1 3.0438 6.8154 2.1855 37 1 3.0649 -0.5801 -1.2370 38 1 1.4866 -0.4568 -2.0505 39 1 3.4595 -2.0860 0.4521 40 1 1.9962 -2.8053 1.1973 41 1 4.0067 -4.4277 0.3267 42 1 2.2989 -4.8985 0.0349 43 1 3.1762 -4.8931 -2.2056 44 1 4.2408 -3.4928 -1.8722 45 1 0.7570 -3.9314 -6.0207 46 1 1.3404 -2.2437 -5.8216 47 1 2.6573 -2.9799 -7.7024 48 1 2.8076 -4.6403 -7.0545 49 1 3.9292 -2.2886 -4.2383 50 1 4.4194 -4.0037 -4.2419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275094335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:07 Heat of formation + Delta-G solvation = -127.500635 kcal Electronic energy + Delta-G solvation = -30405.963391 eV Core-core repulsion = 26239.357857 eV Total energy + Delta-G solvation = -4166.605534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.75146 -40.47061 -39.89923 -38.60097 -37.45137 -35.86036 -33.69080 -33.28930 -32.45712 -31.50908 -30.14600 -29.30513 -27.47417 -26.47803 -25.35317 -23.68186 -23.23804 -22.79100 -21.48907 -21.02289 -19.96543 -19.79315 -18.55554 -17.99012 -17.57289 -17.46897 -16.84334 -16.66968 -16.50757 -16.20170 -15.87048 -15.71007 -15.57362 -15.29281 -15.00024 -14.80177 -14.47346 -14.31419 -14.13858 -13.91555 -13.78884 -13.51356 -13.26980 -13.15219 -13.05436 -12.79519 -12.64657 -12.48942 -12.45174 -12.39757 -12.31556 -12.11169 -12.09995 -11.93247 -11.81700 -11.56269 -11.47241 -11.01384 -10.51301 -10.34085 -10.01053 -9.74319 -9.29585 -8.46840 -5.95513 1.36191 1.41252 1.45320 1.55741 1.78588 2.03629 2.28332 2.73508 2.86018 3.19454 3.20297 3.37130 3.49264 3.64937 3.78560 3.84459 3.91375 4.06180 4.12172 4.18151 4.23286 4.24220 4.26959 4.31435 4.38054 4.47174 4.52352 4.57555 4.61414 4.67558 4.71469 4.74034 4.82955 4.83003 4.88630 5.01397 5.03781 5.11184 5.11951 5.18587 5.34177 5.41173 5.42579 5.80555 5.93309 5.99960 6.08602 6.46662 6.59769 7.03593 7.12485 7.55306 8.10765 8.71044 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002222 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.064057 B =12596.499757 C =13195.589526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.518 5.518 3 C 0.057 3.943 4 C 0.445 3.555 5 O -0.610 6.610 6 N -0.575 5.575 7 C -0.329 4.329 8 H 0.080 0.920 9 C -0.015 4.015 10 N -0.922 5.922 11 Si 0.994 3.006 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.054 3.946 16 C 0.144 3.856 17 H 0.057 0.943 18 C -0.111 4.111 19 C -0.125 4.125 20 C 0.091 3.909 21 N -0.611 5.611 22 C 0.532 3.468 23 O -0.579 6.579 24 C -0.134 4.134 25 H 0.144 0.856 26 C -0.138 4.138 27 C 0.051 3.949 28 O -0.404 6.404 29 C 0.067 3.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.014 0.986 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.277 0.723 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.056 0.944 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -24.686 -15.151 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.242 5.242 3 C -0.074 4.074 4 C 0.233 3.767 5 O -0.496 6.496 6 N -0.212 5.212 7 C -0.459 4.459 8 H 0.098 0.902 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.075 4.075 16 C 0.040 3.960 17 H 0.075 0.925 18 C -0.149 4.149 19 C -0.163 4.163 20 C -0.030 4.030 21 N -0.344 5.344 22 C 0.321 3.679 23 O -0.459 6.459 24 C -0.155 4.155 25 H 0.161 0.839 26 C -0.176 4.176 27 C -0.025 4.025 28 O -0.324 6.324 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.229 0.771 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.082 0.918 47 H 0.111 0.889 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.488 -24.689 -14.442 28.952 hybrid contribution -0.803 1.714 -0.159 1.899 sum 3.685 -22.975 -14.600 27.470 Atomic orbital electron populations 1.22388 0.87249 1.01877 1.00075 1.61491 1.08344 1.12019 1.42365 1.21761 1.02045 0.89460 0.94138 1.20586 0.83792 0.82267 0.90101 1.90455 1.44929 1.65326 1.48849 1.41942 1.50087 1.11487 1.17729 1.19699 1.34236 0.96381 0.95557 0.90164 1.26064 0.96300 0.96652 1.02461 1.69683 1.38259 1.12656 1.35767 0.84853 0.78269 0.77832 0.77272 1.19692 1.19503 1.19767 1.22418 1.00289 0.94039 0.90733 1.21416 0.99047 0.89615 0.85895 0.92460 1.22494 0.99501 0.97244 0.95664 1.22794 1.03609 0.95896 0.94004 1.22700 0.90011 0.93885 0.96382 1.48689 1.38082 1.40170 1.07462 1.20481 0.82616 0.81730 0.83043 1.90720 1.29038 1.42151 1.83971 1.22923 0.96550 1.02830 0.93188 0.83880 1.23162 0.99433 1.02990 0.92039 1.23571 0.81875 1.01638 0.95379 1.88405 1.36085 1.90139 1.17729 1.23131 0.93602 1.01895 0.82344 0.90877 0.91739 0.96751 0.87059 0.92544 0.77146 0.91339 0.89804 0.95782 0.90503 0.90772 0.87356 0.90202 0.87604 0.89475 0.87960 0.91810 0.88885 0.89408 0.92572 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 9.03 127.69 1.15 2.33 16 2 N -0.52 -17.99 4.24 -927.03 -3.93 -21.93 16 3 C 0.06 2.14 5.44 85.56 0.47 2.60 16 4 C 0.45 21.78 7.50 87.66 0.66 22.44 16 5 O -0.61 -33.94 13.89 -3.06 -0.04 -33.98 16 6 N -0.58 -30.23 5.29 -306.97 -1.62 -31.85 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 10 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 11 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 C 0.05 1.53 4.36 86.30 0.38 1.91 16 16 C 0.14 3.40 2.89 45.34 0.13 3.53 16 17 H 0.06 1.60 6.55 -2.39 -0.02 1.58 16 18 C -0.11 -2.12 6.28 31.78 0.20 -1.92 16 19 C -0.13 -1.32 7.07 31.91 0.23 -1.09 16 20 C 0.09 0.87 5.68 86.78 0.49 1.36 16 21 N -0.61 -11.27 3.06 -788.49 -2.41 -13.69 16 22 C 0.53 11.50 6.79 87.66 0.59 12.10 16 23 O -0.58 -18.20 14.95 -3.03 -0.05 -18.25 16 24 C -0.13 -1.81 2.68 -10.28 -0.03 -1.83 16 25 H 0.14 1.01 7.88 -2.39 -0.02 0.99 16 26 C -0.14 -2.04 6.23 32.05 0.20 -1.84 16 27 C 0.05 0.62 7.78 72.65 0.56 1.18 16 28 O -0.40 -6.97 11.36 -148.98 -1.69 -8.66 16 29 C 0.07 0.89 6.44 72.45 0.47 1.36 16 30 H 0.07 2.40 6.51 -2.38 -0.02 2.38 16 31 H 0.06 2.79 5.86 -2.39 -0.01 2.77 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 3.61 7.86 -2.39 -0.02 3.59 16 34 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.39 19.87 7.90 -92.70 -0.73 19.13 16 36 H 0.28 14.19 8.31 -92.72 -0.77 13.42 16 37 H 0.08 2.15 7.71 -2.39 -0.02 2.13 16 38 H 0.02 0.79 6.82 -2.39 -0.02 0.77 16 39 H 0.08 1.57 7.78 -2.39 -0.02 1.55 16 40 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 0.42 7.59 -2.38 -0.02 0.41 16 44 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.06 1.33 7.47 -2.39 -0.02 1.31 16 47 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.06 0.94 7.81 -2.38 -0.02 0.92 16 50 H 0.11 0.78 7.94 -2.39 -0.02 0.76 16 Total: -1.00 -76.05 394.42 -0.44 -76.49 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.21 Total: 33.05 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 6.78 Total: 23.65 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -7.69 Total: -117.81 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.78 Total: -60.89 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.05 -0.44 -76.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275094335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.011 kcal (2) G-P(sol) polarization free energy of solvation -76.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds