Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00274 * 2 1 4 4 C 1.53001 * 109.46744 * 269.99871 * 3 2 1 5 5 H 1.09009 * 110.33349 * 294.19429 * 4 3 2 6 6 C 1.54906 * 110.37577 * 171.82538 * 4 3 2 7 7 C 1.55389 * 101.74674 * 204.18649 * 6 4 3 8 8 C 1.54316 * 102.89889 * 35.48138 * 7 6 4 9 9 N 1.47444 * 107.36836 * 337.89137 * 8 7 6 10 10 C 1.46903 * 111.00513 * 236.66212 * 9 8 7 11 11 C 1.34775 * 119.99742 * 179.97438 * 2 1 3 12 12 O 1.21357 * 119.99897 * 176.42906 * 11 2 1 13 13 C 1.49451 * 120.00114 * 356.42196 * 11 2 1 14 14 O 1.21345 * 120.00032 * 5.95492 * 13 11 2 15 15 N 1.34774 * 119.99877 * 185.94764 * 13 11 2 16 16 C 1.47026 * 125.64931 * 359.69965 * 15 13 11 17 17 C 1.54340 * 107.26470 * 178.84844 * 16 15 13 18 18 C 1.55163 * 103.02006 * 338.13811 * 17 16 15 19 19 O 1.42903 * 111.00230 * 277.23326 * 18 17 16 20 20 C 1.50698 * 111.03502 * 153.39961 * 18 17 16 21 21 H 1.07993 * 120.00335 * 6.32837 * 20 18 17 22 22 C 1.37877 * 119.99668 * 186.33239 * 20 18 17 23 23 N 1.31513 * 120.00351 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99935 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47038 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47076 * 119.99741 * 24 22 20 27 27 H 1.48494 * 109.47358 * 240.00322 * 24 22 20 28 28 C 1.47427 * 125.64909 * 180.02562 * 15 13 11 29 29 H 1.09007 * 109.46664 * 96.01386 * 1 2 3 30 30 H 1.08999 * 109.47506 * 216.01569 * 1 2 3 31 31 H 1.08997 * 109.47063 * 336.02159 * 1 2 3 32 32 H 1.09000 * 109.47662 * 149.99976 * 3 2 1 33 33 H 1.08995 * 109.47010 * 29.99243 * 3 2 1 34 34 H 1.08998 * 110.98908 * 322.19286 * 6 4 3 35 35 H 1.09009 * 110.98946 * 85.96385 * 6 4 3 36 36 H 1.08999 * 110.68101 * 277.17853 * 7 6 4 37 37 H 1.09000 * 110.85195 * 153.85919 * 7 6 4 38 38 H 1.09001 * 109.89015 * 218.41487 * 8 7 6 39 39 H 1.08991 * 109.89189 * 97.38336 * 8 7 6 40 40 H 1.09001 * 109.46833 * 59.87258 * 10 9 8 41 41 H 1.08994 * 109.47379 * 179.87590 * 10 9 8 42 42 H 1.08999 * 109.46812 * 299.87696 * 10 9 8 43 43 H 1.08997 * 109.87897 * 298.38921 * 16 15 13 44 44 H 1.08995 * 109.88313 * 59.55540 * 16 15 13 45 45 H 1.09001 * 110.84603 * 219.67457 * 17 16 15 46 46 H 1.09000 * 110.51506 * 96.44825 * 17 16 15 47 47 H 0.96704 * 113.99210 * 173.64849 * 19 18 17 48 48 H 0.96993 * 120.00243 * 180.02562 * 23 22 20 49 49 H 1.09003 * 110.36497 * 322.93362 * 28 15 13 50 50 H 1.08995 * 110.36894 * 85.25218 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 3.1256 1.0113 -1.9393 6 6 3.0413 3.1428 -1.4720 7 6 2.6363 3.6220 -2.8936 8 6 1.2554 2.9644 -3.0984 9 7 1.1770 1.8110 -2.1832 10 6 0.8972 0.5717 -2.9207 11 6 2.1388 -1.1672 0.0005 12 8 3.3506 -1.1683 -0.0649 13 6 1.3937 -2.4602 0.0819 14 8 0.1811 -2.4654 0.0385 15 7 2.0687 -3.6204 0.2033 16 6 3.5313 -3.7589 0.2613 17 6 3.8428 -5.2610 0.4305 18 6 2.5233 -5.8276 1.0182 19 8 2.4663 -5.6305 2.4325 20 6 2.3588 -7.2850 0.6718 21 1 3.1574 -7.8154 0.1748 22 6 1.1885 -7.9412 0.9895 23 7 0.2157 -7.2952 1.5943 24 14 0.9842 -9.7475 0.5595 25 1 2.2142 -10.2386 -0.1124 26 1 0.7535 -10.5289 1.8011 27 1 -0.1770 -9.9113 -0.3515 28 6 1.4630 -4.9615 0.2932 29 1 -0.3633 -0.1077 -1.0221 30 1 -0.3634 -0.8312 0.6043 31 1 -0.3633 0.9390 0.4176 32 1 3.1500 1.1384 0.5138 33 1 1.6085 2.0283 0.5137 34 1 2.5836 3.7688 -0.7060 35 1 4.1254 3.1218 -1.3598 36 1 3.3478 3.2642 -3.6377 37 1 2.5546 4.7084 -2.9281 38 1 1.1549 2.6266 -4.1299 39 1 0.4661 3.6784 -2.8637 40 1 1.6920 0.3924 -3.6446 41 1 0.8468 -0.2634 -2.2220 42 1 -0.0550 0.6667 -3.4426 43 1 3.9756 -3.3879 -0.6623 44 1 3.9228 -3.2027 1.1130 45 1 4.6695 -5.4098 1.1252 46 1 4.0620 -5.7168 -0.5350 47 1 1.6209 -5.8797 2.8304 48 1 -0.6074 -7.7569 1.8181 49 1 0.5420 -4.9235 0.8749 50 1 1.2670 -5.3568 -0.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327038653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -84.070541 kcal Electronic energy + Delta-G solvation = -31528.791030 eV Core-core repulsion = 27364.068767 eV Total energy + Delta-G solvation = -4164.722263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.64824 -39.38472 -38.24033 -37.23207 -35.53393 -34.11019 -32.39414 -32.25522 -30.71148 -30.21539 -27.91275 -27.05947 -26.49415 -25.52240 -24.95986 -23.11778 -21.63172 -21.38221 -20.28658 -19.65937 -18.69549 -17.21878 -16.89892 -16.64138 -16.47201 -16.12173 -15.51184 -15.28564 -15.11641 -14.56858 -14.43818 -14.27838 -14.12120 -13.70991 -13.38669 -13.11436 -13.00669 -12.91615 -12.86360 -12.63018 -12.29697 -12.18802 -11.88893 -11.69283 -11.66601 -11.49035 -11.43136 -11.37093 -11.22304 -11.07002 -10.93265 -10.89748 -10.61356 -10.56053 -10.46647 -10.20326 -9.37406 -8.93947 -8.79192 -8.70157 -8.42150 -8.37827 -7.85424 -6.30403 -4.39717 1.84543 2.64530 3.18714 3.27795 3.31346 3.60566 3.72221 3.84357 4.25082 4.33386 4.41073 4.63136 4.66772 4.93177 4.97490 5.07142 5.15384 5.23884 5.29385 5.34449 5.46259 5.49339 5.49822 5.54665 5.58628 5.64504 5.74334 5.79839 5.83252 5.84181 5.92103 5.97492 6.07072 6.22383 6.31316 6.48536 6.52365 6.73040 6.75092 6.82808 6.84461 6.87924 7.17885 7.25108 7.31293 7.71762 7.85589 8.00828 8.10112 8.49597 8.64863 9.27674 9.36147 10.76804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002658 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.197062 B =10529.800145 C =10821.672568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.583 5.583 3 C 0.132 3.868 4 C 0.053 3.947 5 H 0.061 0.939 6 C -0.121 4.121 7 C -0.141 4.141 8 C 0.041 3.959 9 N -0.523 5.523 10 C 0.015 3.985 11 C 0.504 3.496 12 O -0.523 6.523 13 C 0.507 3.493 14 O -0.531 6.531 15 N -0.575 5.575 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.535 4.535 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.093 3.907 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.381 0.619 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 19.682 -6.615 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.316 5.316 3 C 0.009 3.991 4 C -0.056 4.056 5 H 0.080 0.920 6 C -0.160 4.160 7 C -0.180 4.180 8 C -0.087 4.087 9 N -0.248 5.248 10 C -0.134 4.134 11 C 0.288 3.712 12 O -0.399 6.399 13 C 0.290 3.710 14 O -0.410 6.410 15 N -0.306 5.306 16 C -0.010 4.010 17 C -0.159 4.159 18 C 0.208 3.792 19 O -0.389 6.389 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.028 4.028 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.230 0.770 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.238 19.975 -6.358 21.081 hybrid contribution -0.234 -1.218 -0.894 1.529 sum 2.004 18.756 -7.252 20.209 Atomic orbital electron populations 1.22468 0.77339 1.03504 1.03737 1.47616 1.08445 1.04610 1.70972 1.21568 0.97740 0.84480 0.95310 1.23045 0.90117 0.96850 0.95574 0.92043 1.22728 1.00891 0.95064 0.97304 1.22801 0.97065 1.00960 0.97124 1.22831 0.97146 0.93321 0.95365 1.63449 1.32378 1.03453 1.25502 1.22739 1.00230 0.92820 0.97580 1.20454 0.87543 0.85431 0.77800 1.90708 1.13600 1.87229 1.48377 1.19591 0.87221 0.84212 0.80015 1.90628 1.13133 1.86019 1.51244 1.48682 1.08882 1.06662 1.66415 1.22125 0.79643 0.97931 1.01349 1.22714 0.99550 0.92566 1.01116 1.19649 0.88245 0.92126 0.79223 1.86134 1.41484 1.89053 1.22274 1.21497 1.01504 0.94506 1.39870 0.91365 1.25088 0.95342 0.99030 0.93819 1.69714 1.06077 1.36878 1.40519 0.86342 0.78226 0.84031 0.78266 1.19573 1.20743 1.20786 1.23471 1.00107 0.77725 1.01504 0.91798 0.87927 0.91974 0.89545 0.89688 0.90336 0.90561 0.91608 0.90636 0.92906 0.90499 0.95888 0.90337 0.91396 0.91689 0.91461 0.90561 0.90416 0.76961 0.92032 0.89081 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.46 59.85 0.51 1.44 16 2 N -0.58 -8.16 1.82 -182.08 -0.33 -8.49 16 3 C 0.13 1.48 5.22 -4.04 -0.02 1.46 16 4 C 0.05 0.56 2.82 -66.19 -0.19 0.37 16 5 H 0.06 0.78 7.78 -51.92 -0.40 0.38 16 6 C -0.12 -0.94 6.50 -24.46 -0.16 -1.10 16 7 C -0.14 -1.01 6.97 -24.77 -0.17 -1.18 16 8 C 0.04 0.34 6.89 -2.84 -0.02 0.32 16 9 N -0.52 -5.42 4.51 -231.60 -1.05 -6.46 16 10 C 0.01 0.17 7.87 60.07 0.47 0.64 16 11 C 0.50 8.73 7.33 -11.58 -0.08 8.65 16 12 O -0.52 -9.61 13.78 5.49 0.08 -9.53 16 13 C 0.51 10.16 7.80 -11.59 -0.09 10.07 16 14 O -0.53 -11.19 13.40 5.50 0.07 -11.11 16 15 N -0.57 -12.17 3.33 -171.01 -0.57 -12.74 16 16 C 0.11 2.19 5.49 -3.05 -0.02 2.17 16 17 C -0.12 -2.49 6.13 -24.88 -0.15 -2.64 16 18 C 0.25 5.97 0.87 -89.61 -0.08 5.90 16 19 O -0.58 -14.72 13.16 -35.23 -0.46 -15.19 16 20 C -0.54 -13.76 8.27 -34.44 -0.28 -14.05 16 21 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 23 N -0.89 -23.35 10.69 55.43 0.59 -22.75 16 24 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.09 2.19 5.38 -2.52 -0.01 2.18 16 29 H 0.06 0.85 5.54 -51.92 -0.29 0.56 16 30 H 0.10 1.60 5.36 -51.93 -0.28 1.33 16 31 H 0.06 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.09 1.01 7.47 -51.93 -0.39 0.62 16 33 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 34 H 0.08 0.55 7.99 -51.93 -0.42 0.14 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.43 7.58 -51.93 -0.39 0.04 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 41 H 0.08 1.07 4.60 -51.93 -0.24 0.83 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.18 7.59 -51.93 -0.39 0.79 16 44 H 0.07 1.32 7.71 -51.93 -0.40 0.92 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 47 H 0.38 9.81 7.56 45.56 0.34 10.15 16 48 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 49 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 50 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -28.12 384.08 -8.68 -36.80 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -7.38 Total: 12.67 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: -0.40 Total: 15.94 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -1.35 Total: -50.45 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.31 Total: -35.83 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.12 -8.68 -36.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.269 kcal (2) G-P(sol) polarization free energy of solvation -28.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds