Wall clock time and date at job start Tue Mar 31 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00274 * 2 1 4 4 C 1.53001 * 109.46744 * 269.99871 * 3 2 1 5 5 H 1.09009 * 110.33349 * 294.19429 * 4 3 2 6 6 C 1.54906 * 110.37577 * 171.82538 * 4 3 2 7 7 C 1.55389 * 101.74674 * 204.18649 * 6 4 3 8 8 C 1.54316 * 102.89889 * 35.48138 * 7 6 4 9 9 N 1.47444 * 107.36836 * 337.89137 * 8 7 6 10 10 C 1.46903 * 111.00513 * 236.66212 * 9 8 7 11 11 C 1.34775 * 119.99742 * 179.97438 * 2 1 3 12 12 O 1.21357 * 119.99897 * 176.42906 * 11 2 1 13 13 C 1.49451 * 120.00114 * 356.42196 * 11 2 1 14 14 O 1.21345 * 120.00032 * 5.95492 * 13 11 2 15 15 N 1.34774 * 119.99877 * 185.94764 * 13 11 2 16 16 C 1.47026 * 125.64931 * 359.69965 * 15 13 11 17 17 C 1.54340 * 107.26470 * 178.84844 * 16 15 13 18 18 C 1.55163 * 103.02006 * 338.13811 * 17 16 15 19 19 O 1.42903 * 111.00230 * 277.23326 * 18 17 16 20 20 C 1.50698 * 111.03502 * 153.39961 * 18 17 16 21 21 H 1.07993 * 120.00335 * 6.32837 * 20 18 17 22 22 C 1.37877 * 119.99668 * 186.33239 * 20 18 17 23 23 N 1.31513 * 120.00351 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99935 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47038 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47076 * 119.99741 * 24 22 20 27 27 H 1.48494 * 109.47358 * 240.00322 * 24 22 20 28 28 C 1.47427 * 125.64909 * 180.02562 * 15 13 11 29 29 H 1.09007 * 109.46664 * 96.01386 * 1 2 3 30 30 H 1.08999 * 109.47506 * 216.01569 * 1 2 3 31 31 H 1.08997 * 109.47063 * 336.02159 * 1 2 3 32 32 H 1.09000 * 109.47662 * 149.99976 * 3 2 1 33 33 H 1.08995 * 109.47010 * 29.99243 * 3 2 1 34 34 H 1.08998 * 110.98908 * 322.19286 * 6 4 3 35 35 H 1.09009 * 110.98946 * 85.96385 * 6 4 3 36 36 H 1.08999 * 110.68101 * 277.17853 * 7 6 4 37 37 H 1.09000 * 110.85195 * 153.85919 * 7 6 4 38 38 H 1.09001 * 109.89015 * 218.41487 * 8 7 6 39 39 H 1.08991 * 109.89189 * 97.38336 * 8 7 6 40 40 H 1.09001 * 109.46833 * 59.87258 * 10 9 8 41 41 H 1.08994 * 109.47379 * 179.87590 * 10 9 8 42 42 H 1.08999 * 109.46812 * 299.87696 * 10 9 8 43 43 H 1.08997 * 109.87897 * 298.38921 * 16 15 13 44 44 H 1.08995 * 109.88313 * 59.55540 * 16 15 13 45 45 H 1.09001 * 110.84603 * 219.67457 * 17 16 15 46 46 H 1.09000 * 110.51506 * 96.44825 * 17 16 15 47 47 H 0.96704 * 113.99210 * 173.64849 * 19 18 17 48 48 H 0.96993 * 120.00243 * 180.02562 * 23 22 20 49 49 H 1.09003 * 110.36497 * 322.93362 * 28 15 13 50 50 H 1.08995 * 110.36894 * 85.25218 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 3.1256 1.0113 -1.9393 6 6 3.0413 3.1428 -1.4720 7 6 2.6363 3.6220 -2.8936 8 6 1.2554 2.9644 -3.0984 9 7 1.1770 1.8110 -2.1832 10 6 0.8972 0.5717 -2.9207 11 6 2.1388 -1.1672 0.0005 12 8 3.3506 -1.1683 -0.0649 13 6 1.3937 -2.4602 0.0819 14 8 0.1811 -2.4654 0.0385 15 7 2.0687 -3.6204 0.2033 16 6 3.5313 -3.7589 0.2613 17 6 3.8428 -5.2610 0.4305 18 6 2.5233 -5.8276 1.0182 19 8 2.4663 -5.6305 2.4325 20 6 2.3588 -7.2850 0.6718 21 1 3.1574 -7.8154 0.1748 22 6 1.1885 -7.9412 0.9895 23 7 0.2157 -7.2952 1.5943 24 14 0.9842 -9.7475 0.5595 25 1 2.2142 -10.2386 -0.1124 26 1 0.7535 -10.5289 1.8011 27 1 -0.1770 -9.9113 -0.3515 28 6 1.4630 -4.9615 0.2932 29 1 -0.3633 -0.1077 -1.0221 30 1 -0.3634 -0.8312 0.6043 31 1 -0.3633 0.9390 0.4176 32 1 3.1500 1.1384 0.5138 33 1 1.6085 2.0283 0.5137 34 1 2.5836 3.7688 -0.7060 35 1 4.1254 3.1218 -1.3598 36 1 3.3478 3.2642 -3.6377 37 1 2.5546 4.7084 -2.9281 38 1 1.1549 2.6266 -4.1299 39 1 0.4661 3.6784 -2.8637 40 1 1.6920 0.3924 -3.6446 41 1 0.8468 -0.2634 -2.2220 42 1 -0.0550 0.6667 -3.4426 43 1 3.9756 -3.3879 -0.6623 44 1 3.9228 -3.2027 1.1130 45 1 4.6695 -5.4098 1.1252 46 1 4.0620 -5.7168 -0.5350 47 1 1.6209 -5.8797 2.8304 48 1 -0.6074 -7.7569 1.8181 49 1 0.5420 -4.9235 0.8749 50 1 1.2670 -5.3568 -0.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327038653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:46 Heat of formation + Delta-G solvation = -103.618487 kcal Electronic energy + Delta-G solvation = -31529.638693 eV Core-core repulsion = 27364.068767 eV Total energy + Delta-G solvation = -4165.569926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02400 -40.52602 -39.58093 -38.87838 -36.86193 -35.81855 -34.24585 -33.15209 -31.94981 -31.56555 -29.70359 -28.11767 -27.88657 -26.80910 -26.12940 -24.64480 -22.99043 -22.03681 -21.54569 -21.22593 -20.08820 -19.12814 -18.32378 -17.96568 -17.60643 -17.19389 -17.07727 -16.76405 -16.56271 -16.24970 -15.69136 -15.52630 -15.06124 -14.88724 -14.73669 -14.66655 -14.53748 -14.23626 -13.95658 -13.75741 -13.60043 -13.55907 -13.45506 -13.28607 -12.85956 -12.75624 -12.60878 -12.45697 -12.37431 -12.25328 -12.20288 -12.17971 -12.09273 -12.02428 -11.98570 -11.56039 -11.21177 -10.69869 -10.42734 -10.26392 -9.95338 -9.57644 -9.27666 -8.25512 -6.42157 0.36425 1.26944 1.42319 1.45736 1.56179 2.10765 2.35647 2.44622 2.95395 3.00364 3.16720 3.67212 3.70920 3.76363 4.02919 4.04702 4.13146 4.14625 4.24103 4.30689 4.35577 4.36691 4.41052 4.53919 4.62572 4.65074 4.70769 4.72262 4.76878 4.85199 4.89828 4.97716 4.98852 5.02269 5.04480 5.10243 5.13378 5.21921 5.31822 5.34347 5.40790 5.43162 5.74170 5.88929 6.03304 6.04010 6.06716 6.32914 6.59723 6.67917 6.94544 7.26426 7.34552 8.80322 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002658 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.197062 B =10529.800145 C =10821.672568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.569 5.569 3 C 0.129 3.871 4 C 0.054 3.946 5 H 0.035 0.965 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.038 3.962 9 N -0.527 5.527 10 C 0.021 3.979 11 C 0.507 3.493 12 O -0.537 6.537 13 C 0.499 3.501 14 O -0.546 6.546 15 N -0.585 5.585 16 C 0.121 3.879 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.587 6.587 20 C -0.554 4.554 21 H 0.069 0.931 22 C 0.028 3.972 23 N -0.913 5.913 24 Si 0.965 3.035 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.108 3.892 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.374 0.626 48 H 0.270 0.730 49 H 0.060 0.940 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 21.669 -7.255 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C 0.007 3.993 4 C -0.055 4.055 5 H 0.053 0.947 6 C -0.153 4.153 7 C -0.174 4.174 8 C -0.089 4.089 9 N -0.251 5.251 10 C -0.128 4.128 11 C 0.290 3.710 12 O -0.415 6.415 13 C 0.283 3.717 14 O -0.426 6.426 15 N -0.317 5.317 16 C -0.001 4.001 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.592 4.592 21 H 0.087 0.913 22 C -0.173 4.173 23 N -0.552 5.552 24 Si 0.790 3.210 25 H -0.190 1.190 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.014 4.014 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.223 0.777 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.800 22.012 -7.007 23.270 hybrid contribution -0.479 -1.752 -0.701 1.947 sum 2.321 20.261 -7.708 21.801 Atomic orbital electron populations 1.22405 0.76709 1.04013 1.03407 1.47689 1.08912 1.04581 1.68914 1.21847 0.97769 0.83293 0.96348 1.22987 0.89910 0.98083 0.94555 0.94731 1.22731 1.01276 0.93109 0.98191 1.22794 0.96040 1.02064 0.96518 1.22915 0.98342 0.92685 0.94947 1.63465 1.32204 1.03459 1.25980 1.22628 1.00568 0.92711 0.96902 1.19904 0.87190 0.85252 0.78698 1.90696 1.13760 1.87241 1.49755 1.20253 0.87302 0.85024 0.79098 1.90629 1.14000 1.86546 1.51466 1.48721 1.09513 1.06230 1.67215 1.22105 0.78636 0.97237 1.02087 1.22720 0.97958 0.92959 1.01657 1.19859 0.90280 0.91956 0.78579 1.86126 1.41067 1.89066 1.23232 1.21764 1.01754 0.95521 1.40184 0.91317 1.25804 0.95090 1.02696 0.93721 1.69819 1.06312 1.38128 1.40975 0.85399 0.78152 0.79531 0.77889 1.18976 1.20617 1.20688 1.23024 0.98928 0.79372 1.00049 0.91823 0.90497 0.88891 0.89824 0.87004 0.88832 0.89931 0.92003 0.88609 0.92952 0.89380 0.96506 0.92805 0.90441 0.90083 0.91561 0.89670 0.89086 0.77695 0.92032 0.92175 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.93 8.46 127.77 1.08 3.01 16 2 N -0.57 -15.40 1.82 -848.35 -1.54 -16.95 16 3 C 0.13 2.64 5.22 86.38 0.45 3.09 16 4 C 0.05 1.04 2.82 45.39 0.13 1.16 16 5 H 0.03 0.86 7.78 -2.38 -0.02 0.84 16 6 C -0.11 -1.45 6.50 32.07 0.21 -1.24 16 7 C -0.14 -1.55 6.97 31.86 0.22 -1.33 16 8 C 0.04 0.54 6.89 86.65 0.60 1.14 16 9 N -0.53 -9.91 4.51 -886.66 -4.00 -13.91 16 10 C 0.02 0.45 7.87 127.69 1.01 1.46 16 11 C 0.51 17.52 7.33 87.27 0.64 18.16 16 12 O -0.54 -19.49 13.78 -3.27 -0.05 -19.54 16 13 C 0.50 20.43 7.80 87.27 0.68 21.11 16 14 O -0.55 -23.78 13.40 -3.23 -0.04 -23.82 16 15 N -0.58 -25.26 3.33 -813.31 -2.70 -27.96 16 16 C 0.12 4.70 5.49 86.73 0.48 5.18 16 17 C -0.12 -4.66 6.13 31.79 0.19 -4.47 16 18 C 0.23 11.42 0.87 -10.14 -0.01 11.41 16 19 O -0.59 -30.40 13.16 -148.98 -1.96 -32.36 16 20 C -0.55 -28.71 8.27 25.60 0.21 -28.50 16 21 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 22 C 0.03 1.45 5.29 84.65 0.45 1.90 16 23 N -0.91 -48.80 10.69 21.45 0.23 -48.58 16 24 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 28 C 0.11 5.29 5.38 86.86 0.47 5.76 16 29 H 0.06 1.65 5.54 -2.38 -0.01 1.64 16 30 H 0.08 2.42 5.36 -2.46 -0.01 2.41 16 31 H 0.09 1.79 7.83 -2.39 -0.02 1.77 16 32 H 0.08 1.80 7.47 -2.39 -0.02 1.79 16 33 H 0.11 1.72 7.77 -2.39 -0.02 1.71 16 34 H 0.09 0.94 7.99 -2.39 -0.02 0.92 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.75 7.58 -2.39 -0.02 0.73 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.02 0.38 8.11 -2.39 -0.02 0.36 16 41 H 0.05 1.46 4.60 -2.39 -0.01 1.45 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.88 7.59 -2.39 -0.02 2.86 16 44 H 0.07 2.58 7.71 -2.39 -0.02 2.56 16 45 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 47 H 0.37 19.99 7.56 -74.05 -0.56 19.43 16 48 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 49 H 0.06 3.28 7.33 -2.39 -0.02 3.26 16 50 H 0.05 2.71 8.03 -2.39 -0.02 2.69 16 Total: -1.00 -61.27 384.08 -0.85 -62.12 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: 0.39 Total: 39.75 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 6.80 Total: 37.85 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -8.02 Total: -107.40 kcal Atomic # 8 Polarization: -73.67 SS G_CDS: -2.05 Total: -75.72 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -61.27 -0.85 -62.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.497 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds