Wall clock time and date at job start Tue Mar 31 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00082 * 2 1 4 4 C 1.52996 * 109.47066 * 275.74077 * 3 2 1 5 5 H 1.08996 * 110.36978 * 60.72042 * 4 3 2 6 6 C 1.54380 * 110.41398 * 298.36606 * 4 3 2 7 7 C 1.54256 * 105.06472 * 217.36918 * 6 4 3 8 8 C 1.54382 * 105.05781 * 0.02562 * 7 6 4 9 9 N 1.48561 * 110.41015 * 183.19521 * 4 3 2 10 10 C 1.46901 * 111.00017 * 277.82005 * 9 4 3 11 11 C 1.34778 * 119.99833 * 180.02562 * 2 1 3 12 12 O 1.21354 * 120.00097 * 183.33319 * 11 2 1 13 13 C 1.49446 * 120.00118 * 3.05312 * 11 2 1 14 14 O 1.21353 * 119.99912 * 354.13475 * 13 11 2 15 15 N 1.34772 * 120.00336 * 174.14109 * 13 11 2 16 16 C 1.47429 * 125.64543 * 359.69093 * 15 13 11 17 17 C 1.55134 * 104.72175 * 155.82148 * 16 15 13 18 18 C 1.55157 * 101.48737 * 37.29331 * 17 16 15 19 19 O 1.42897 * 110.72050 * 82.69524 * 18 17 16 20 20 C 1.50705 * 110.87129 * 205.90173 * 18 17 16 21 21 H 1.07997 * 119.99586 * 355.05994 * 20 18 17 22 22 C 1.37873 * 119.99853 * 175.06499 * 20 18 17 23 23 N 1.31515 * 120.00155 * 359.97438 * 22 20 18 24 24 Si 1.86797 * 119.99961 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47443 * 89.99753 * 24 22 20 26 26 H 1.48499 * 109.47059 * 210.00042 * 24 22 20 27 27 H 1.48503 * 109.47213 * 329.99944 * 24 22 20 28 28 C 1.47026 * 125.65200 * 179.97438 * 15 13 11 29 29 H 1.09004 * 109.47110 * 264.11267 * 1 2 3 30 30 H 1.09002 * 109.47459 * 24.11255 * 1 2 3 31 31 H 1.08999 * 109.47887 * 144.11124 * 1 2 3 32 32 H 1.08994 * 109.47113 * 35.74426 * 3 2 1 33 33 H 1.09004 * 109.46738 * 155.74160 * 3 2 1 34 34 H 1.09001 * 110.32335 * 336.26445 * 6 4 3 35 35 H 1.08999 * 110.32475 * 98.37179 * 6 4 3 36 36 H 1.09000 * 110.32360 * 118.89313 * 7 6 4 37 37 H 1.08992 * 110.33039 * 241.10736 * 7 6 4 38 38 H 1.09002 * 110.41323 * 142.63354 * 8 7 6 39 39 H 1.08997 * 110.41332 * 264.95200 * 8 7 6 40 40 H 1.08996 * 109.46872 * 65.00374 * 10 9 4 41 41 H 1.09000 * 109.47109 * 185.00907 * 10 9 4 42 42 H 1.09003 * 109.46968 * 305.00550 * 10 9 4 43 43 H 1.09001 * 110.36208 * 274.74571 * 16 15 13 44 44 H 1.08996 * 110.36625 * 37.07022 * 16 15 13 45 45 H 1.09004 * 111.18719 * 279.18931 * 17 16 15 46 46 H 1.08997 * 110.90677 * 155.27411 * 17 16 15 47 47 H 0.96699 * 114.00152 * 185.01892 * 19 18 17 48 48 H 0.97002 * 119.99783 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.88439 * 300.44060 * 28 15 13 50 50 H 1.09002 * 109.87942 * 61.60392 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3275 1.7825 -1.4352 5 1 1.3418 1.9536 -1.8677 6 6 3.1264 0.7802 -2.2957 7 6 3.9813 1.6527 -3.2376 8 6 3.6276 3.1089 -2.8666 9 7 3.1339 3.0298 -1.4679 10 6 2.3094 4.1987 -1.1335 11 6 2.1388 -1.1672 -0.0005 12 8 3.3508 -1.1682 0.0606 13 6 1.3931 -2.4605 -0.0700 14 8 0.1807 -2.4654 -0.0186 15 7 2.0671 -3.6214 -0.1897 16 6 3.5328 -3.7597 -0.2695 17 6 3.8202 -5.2018 0.2249 18 6 2.6166 -5.9785 -0.3714 19 8 2.8645 -6.3258 -1.7352 20 6 2.3149 -7.2095 0.4440 21 1 2.9597 -7.4844 1.2656 22 6 1.2158 -7.9848 0.1409 23 7 0.4304 -7.6498 -0.8594 24 14 0.8422 -9.5110 1.1510 25 1 -0.0387 -9.1476 2.2899 26 1 0.1581 -10.5148 0.2968 27 1 2.1103 -10.0842 1.6694 28 6 1.4624 -4.9593 -0.2682 29 1 -0.3633 -0.1054 1.0223 30 1 -0.3634 0.9380 -0.4198 31 1 -0.3635 -0.8325 -0.6024 32 1 1.6568 2.0004 0.6003 33 1 3.1905 1.1148 0.4222 34 1 3.7672 0.1653 -1.6637 35 1 2.4480 0.1510 -2.8719 36 1 5.0417 1.4661 -3.0680 37 1 3.7226 1.4531 -4.2774 38 1 4.5136 3.7414 -2.9223 39 1 2.8474 3.4903 -3.5254 40 1 1.9676 4.1189 -0.1016 41 1 2.9012 5.1064 -1.2512 42 1 1.4475 4.2380 -1.7997 43 1 3.8701 -3.6347 -1.2984 44 1 4.0184 -3.0323 0.3809 45 1 3.8174 -5.2529 1.3137 46 1 4.7625 -5.5711 -0.1796 47 1 2.1134 -6.7447 -2.1772 48 1 -0.3430 -8.1951 -1.0724 49 1 0.8750 -5.1538 0.6291 50 1 0.8275 -5.0278 -1.1515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327038654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:51 Heat of formation + Delta-G solvation = -87.319649 kcal Electronic energy + Delta-G solvation = -31356.841255 eV Core-core repulsion = 27191.978099 eV Total energy + Delta-G solvation = -4164.863155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.70654 -39.36758 -38.28476 -37.29940 -35.71323 -34.16361 -32.38224 -32.25441 -30.68098 -30.15187 -27.92121 -26.91935 -26.51053 -25.81893 -25.07784 -23.19554 -21.70648 -21.19688 -20.13629 -19.60242 -18.96411 -17.19782 -16.96781 -16.78457 -16.36062 -16.05077 -15.54076 -15.41166 -15.19996 -14.68613 -14.51588 -14.21429 -14.04345 -13.81171 -13.52620 -13.03693 -13.01647 -12.95441 -12.81112 -12.59218 -12.46761 -12.29554 -12.12752 -11.88908 -11.72953 -11.59143 -11.49688 -11.40839 -11.08832 -10.99580 -10.90491 -10.71450 -10.62696 -10.51351 -10.44883 -10.15582 -9.32127 -9.01981 -8.89547 -8.70271 -8.62988 -8.34743 -7.98663 -6.31244 -4.39502 1.77080 2.51509 3.19982 3.27611 3.30806 3.52573 3.62091 3.90690 4.25368 4.36296 4.49147 4.56912 4.79126 4.86359 4.97257 4.98290 5.12148 5.15399 5.18066 5.20812 5.41257 5.43460 5.50087 5.54329 5.64925 5.65437 5.78235 5.80464 5.81192 5.88988 5.95475 6.00858 6.05517 6.17415 6.26123 6.38709 6.51931 6.57331 6.70648 6.76192 6.82120 6.85187 7.10653 7.19350 7.31724 7.70321 7.81586 8.01237 8.04523 8.43683 8.64595 9.26952 9.35770 10.76575 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002681 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.349909 B =10440.416978 C =10940.608910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.127 3.873 4 C 0.049 3.951 5 H 0.053 0.947 6 C -0.127 4.127 7 C -0.124 4.124 8 C 0.035 3.965 9 N -0.509 5.509 10 C 0.012 3.988 11 C 0.512 3.488 12 O -0.514 6.514 13 C 0.506 3.494 14 O -0.533 6.533 15 N -0.574 5.574 16 C 0.095 3.905 17 C -0.120 4.120 18 C 0.247 3.753 19 O -0.583 6.583 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.101 3.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.382 0.618 48 H 0.270 0.730 49 H 0.072 0.928 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 20.370 -2.117 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.004 3.996 4 C -0.061 4.061 5 H 0.071 0.929 6 C -0.165 4.165 7 C -0.162 4.162 8 C -0.093 4.093 9 N -0.233 5.233 10 C -0.137 4.137 11 C 0.296 3.704 12 O -0.389 6.389 13 C 0.288 3.712 14 O -0.413 6.413 15 N -0.306 5.306 16 C -0.027 4.027 17 C -0.158 4.158 18 C 0.207 3.793 19 O -0.392 6.392 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.020 4.020 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.232 0.768 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.041 20.615 -1.618 20.901 hybrid contribution -1.826 -0.822 -0.251 2.018 sum 1.214 19.793 -1.869 19.919 Atomic orbital electron populations 1.22377 0.77770 1.03769 1.03568 1.47617 1.08107 1.04954 1.71862 1.21379 0.98978 0.83825 0.95429 1.23056 0.95710 0.90795 0.96518 0.92900 1.22468 0.98769 0.97459 0.97808 1.22279 1.00968 0.93763 0.99150 1.23096 0.99889 0.97821 0.88504 1.65201 1.33014 1.01666 1.23427 1.22545 0.96021 0.93828 1.01264 1.20399 0.87533 0.85243 0.77273 1.90664 1.13490 1.86831 1.47961 1.19564 0.87185 0.84235 0.80174 1.90623 1.13250 1.86099 1.51319 1.48728 1.09255 1.06446 1.66175 1.22735 0.79459 0.98713 1.01765 1.22848 0.99808 0.92789 1.00343 1.19525 0.87963 0.90650 0.81167 1.86131 1.44325 1.82433 1.26272 1.21508 1.10915 1.08972 1.16013 0.91424 1.25078 0.95283 0.97976 0.94983 1.69692 1.15952 1.39419 1.28345 0.86389 0.78567 0.82022 0.79871 1.20434 1.20991 1.19656 1.23224 0.98506 0.77895 1.02371 0.92245 0.92270 0.87258 0.90594 0.88231 0.88997 0.91802 0.90790 0.91460 0.90010 0.93948 0.91140 0.91190 0.95394 0.91519 0.89084 0.90428 0.90379 0.76833 0.91995 0.90922 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.55 59.84 0.57 1.38 16 2 N -0.59 -7.93 2.71 -182.09 -0.49 -8.42 16 3 C 0.13 1.43 5.13 -4.04 -0.02 1.41 16 4 C 0.05 0.51 2.57 -66.07 -0.17 0.34 16 5 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 6 C -0.13 -1.51 5.76 -25.35 -0.15 -1.66 16 7 C -0.12 -1.20 7.00 -25.35 -0.18 -1.38 16 8 C 0.03 0.30 6.49 -2.19 -0.01 0.29 16 9 N -0.51 -4.91 5.34 -230.37 -1.23 -6.14 16 10 C 0.01 0.09 9.42 60.07 0.57 0.66 16 11 C 0.51 8.51 6.98 -11.59 -0.08 8.43 16 12 O -0.51 -8.96 11.40 5.49 0.06 -8.90 16 13 C 0.51 9.87 7.80 -11.59 -0.09 9.78 16 14 O -0.53 -11.02 13.48 5.49 0.07 -10.94 16 15 N -0.57 -11.95 3.32 -170.88 -0.57 -12.52 16 16 C 0.10 1.83 6.17 -2.41 -0.01 1.81 16 17 C -0.12 -2.45 6.24 -24.46 -0.15 -2.60 16 18 C 0.25 5.93 0.85 -89.93 -0.08 5.85 16 19 O -0.58 -14.48 13.07 -35.23 -0.46 -14.94 16 20 C -0.54 -13.83 8.13 -34.44 -0.28 -14.11 16 21 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 22 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 23 N -0.90 -23.35 10.96 55.43 0.61 -22.74 16 24 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.10 2.39 5.24 -3.06 -0.02 2.37 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.11 1.58 5.38 -51.93 -0.28 1.30 16 32 H 0.08 0.70 7.58 -51.93 -0.39 0.31 16 33 H 0.10 1.28 7.22 -51.93 -0.37 0.91 16 34 H 0.09 1.31 5.78 -51.93 -0.30 1.01 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.34 7.98 -51.93 -0.41 -0.07 16 40 H 0.07 0.48 7.59 -51.93 -0.39 0.09 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.03 0.20 7.97 -51.93 -0.41 -0.22 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.65 5.99 -51.93 -0.31 1.34 16 45 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 46 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 47 H 0.38 9.62 7.45 45.56 0.34 9.96 16 48 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 49 H 0.07 1.85 7.81 -51.93 -0.41 1.45 16 50 H 0.07 1.80 7.91 -51.93 -0.41 1.39 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -27.88 387.62 -8.91 -36.80 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.53 Total: 12.49 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.20 Total: 14.27 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.68 Total: -49.83 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.32 Total: -34.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.88 -8.91 -36.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327038654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.524 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds