Wall clock time and date at job start Tue Mar 31 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00277 * 2 1 4 4 C 1.50706 * 109.47142 * 66.04308 * 3 2 1 5 5 O 1.21295 * 119.99837 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00158 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00407 * 179.97438 * 6 4 3 8 8 H 1.08003 * 119.99304 * 0.02562 * 7 6 4 9 9 C 1.38943 * 120.00391 * 179.97438 * 7 6 4 10 10 N 1.31413 * 120.00103 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00274 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46862 * 90.00106 * 11 9 7 13 13 H 1.48496 * 109.47587 * 210.00484 * 11 9 7 14 14 H 1.48501 * 109.46939 * 330.00616 * 11 9 7 15 15 C 1.46894 * 111.00086 * 236.04133 * 2 1 3 16 16 C 1.52997 * 109.47515 * 293.95813 * 15 2 1 17 17 H 1.09002 * 109.47153 * 59.99762 * 16 15 2 18 18 O 1.42896 * 109.46906 * 300.00045 * 16 15 2 19 19 C 1.53000 * 109.47060 * 180.02562 * 16 15 2 20 20 N 1.46497 * 109.46926 * 185.00195 * 19 16 15 21 21 C 1.46508 * 119.99956 * 269.99678 * 20 19 16 22 22 C 1.34776 * 120.00516 * 89.99392 * 20 19 16 23 23 O 1.21283 * 119.99694 * 0.02562 * 22 20 19 24 24 C 1.50699 * 120.00453 * 179.97438 * 22 20 19 25 25 H 1.09004 * 115.54592 * 34.28148 * 24 22 20 26 26 C 1.53004 * 117.50043 * 248.61618 * 24 22 20 27 27 C 1.52997 * 117.50258 * 179.97438 * 24 22 20 28 28 C 1.52991 * 138.58327 * 336.59871 * 27 24 22 29 29 C 1.52992 * 138.58737 * 238.38840 * 27 24 22 30 30 H 1.08994 * 109.47768 * 183.95429 * 1 2 3 31 31 H 1.09001 * 109.47114 * 303.96032 * 1 2 3 32 32 H 1.09004 * 109.46895 * 63.95547 * 1 2 3 33 33 H 1.09000 * 109.47344 * 186.04167 * 3 2 1 34 34 H 1.08997 * 109.47244 * 306.04670 * 3 2 1 35 35 H 0.96996 * 119.99864 * 0.02562 * 6 4 3 36 36 H 0.97002 * 119.99944 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.47104 * 173.95545 * 15 2 1 38 38 H 1.08998 * 109.46828 * 53.96377 * 15 2 1 39 39 H 0.96708 * 114.00101 * 299.99268 * 18 16 15 40 40 H 1.09002 * 109.47069 * 304.99600 * 19 16 15 41 41 H 1.08991 * 109.47625 * 64.99919 * 19 16 15 42 42 H 1.09002 * 109.46873 * 89.99966 * 21 20 19 43 43 H 1.09002 * 109.47338 * 209.99769 * 21 20 19 44 44 H 1.09000 * 109.46817 * 330.00205 * 21 20 19 45 45 H 1.09000 * 117.50129 * 359.97438 * 26 24 22 46 46 H 1.08993 * 117.50146 * 145.02506 * 26 24 22 47 47 H 1.08998 * 117.50297 * 336.59195 * 28 27 24 48 48 H 1.09002 * 117.49755 * 121.61983 * 28 27 24 49 49 H 1.09001 * 117.49635 * 238.37406 * 29 27 24 50 50 H 1.08995 * 117.50047 * 23.37588 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 8 1.0053 1.4453 2.1412 6 7 2.0180 3.3202 1.5233 7 6 1.6914 3.9351 2.7043 8 1 1.1290 3.3992 3.4546 9 6 2.0847 5.2474 2.9364 10 7 2.7694 5.8993 2.0236 11 14 1.6403 6.0850 4.5458 12 1 2.7170 5.8484 5.5407 13 1 1.4881 7.5446 4.3188 14 1 0.3624 5.5278 5.0575 15 6 1.9954 -0.7660 -1.1375 16 6 1.6314 -2.2426 -0.9702 17 1 0.5471 -2.3475 -0.9322 18 8 2.2007 -2.7391 0.2427 19 6 2.1803 -3.0405 -2.1547 20 7 1.7310 -4.4314 -2.0567 21 6 2.5425 -5.4142 -1.3341 22 6 0.5712 -4.8071 -2.6312 23 8 -0.1005 -3.9937 -3.2297 24 6 0.1093 -6.2381 -2.5308 25 1 0.3582 -6.7482 -1.6002 26 6 0.1063 -7.0712 -3.8142 27 6 -1.2160 -6.6016 -3.2034 28 6 -2.5041 -5.9075 -3.6503 29 6 -2.5749 -7.1894 -2.8181 30 1 -0.3634 -1.0251 0.0709 31 1 -0.3633 0.5741 0.8524 32 1 -0.3633 0.4512 -0.9234 33 1 3.0798 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5227 3.8015 0.8493 36 1 3.0444 6.8153 2.1858 37 1 3.0797 -0.6612 -1.1755 38 1 1.5612 -0.3872 -2.0627 39 1 3.1652 -2.6772 0.2788 40 1 1.8161 -2.6059 -3.0856 41 1 3.2697 -3.0087 -2.1407 42 1 2.2413 -5.4344 -0.2867 43 1 2.3952 -6.4007 -1.7736 44 1 3.5948 -5.1385 -1.4043 45 1 0.4380 -6.5841 -4.7312 46 1 0.3526 -8.1294 -3.7279 47 1 -2.7690 -4.9722 -3.1573 48 1 -2.7731 -5.9762 -4.7044 49 1 -2.8906 -8.1015 -3.3247 50 1 -2.8862 -7.0978 -1.7776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486351008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:50 Heat of formation + Delta-G solvation = -68.879619 kcal Electronic energy + Delta-G solvation = -29481.380100 eV Core-core repulsion = 25317.316564 eV Total energy + Delta-G solvation = -4164.063536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.30252 -40.43810 -39.28681 -38.32837 -37.04578 -36.05918 -35.75793 -33.63707 -33.28304 -31.70034 -29.49598 -28.27925 -27.36351 -26.76637 -25.07394 -23.49612 -23.31358 -22.12881 -21.05578 -20.88870 -19.85748 -19.52231 -18.32093 -18.03608 -17.36082 -17.06381 -16.83822 -16.71149 -16.48439 -16.18571 -16.01928 -15.91472 -15.58407 -15.20261 -15.14199 -15.03626 -14.72421 -14.25591 -13.79668 -13.76349 -13.47436 -13.44043 -13.29672 -13.05701 -12.78870 -12.72896 -12.65076 -12.57667 -12.53188 -12.41725 -12.39615 -12.12861 -11.88685 -11.46538 -11.32125 -11.19466 -11.07098 -10.95224 -10.71964 -10.28189 -9.99911 -9.56458 -9.19562 -8.46530 -5.95024 1.37428 1.40588 1.41099 1.53652 1.90923 2.05761 2.28228 2.67692 2.72415 2.82066 3.20025 3.30514 3.37465 3.55711 3.65495 3.77164 3.83291 4.00120 4.05187 4.10352 4.25360 4.29485 4.33884 4.42511 4.46792 4.50182 4.52144 4.57207 4.62115 4.66646 4.71871 4.72257 4.74225 4.78290 4.79233 4.94981 4.98391 5.02369 5.03984 5.12605 5.23782 5.40925 5.51551 5.86149 6.03507 6.16412 6.35119 6.61410 6.98020 7.13534 7.14552 7.56839 8.13602 8.70865 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.001839 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.604615 B =15218.307090 C =15646.032744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.524 5.524 3 C 0.058 3.942 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.574 5.574 7 C -0.332 4.332 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.993 3.007 12 H -0.270 1.270 13 H -0.270 1.270 14 H -0.275 1.275 15 C 0.026 3.974 16 C 0.110 3.890 17 H 0.063 0.937 18 O -0.557 6.557 19 C 0.090 3.910 20 N -0.604 5.604 21 C 0.076 3.924 22 C 0.530 3.470 23 O -0.581 6.581 24 C -0.148 4.148 25 H 0.144 0.856 26 C -0.077 4.077 27 C -0.231 4.231 28 C -0.135 4.135 29 C -0.109 4.109 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.384 0.616 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.137 0.863 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -27.474 -15.071 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C -0.073 4.073 4 C 0.228 3.772 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.816 3.184 12 H -0.195 1.195 13 H -0.195 1.195 14 H -0.200 1.200 15 C -0.102 4.102 16 C 0.049 3.951 17 H 0.081 0.919 18 O -0.364 6.364 19 C -0.033 4.033 20 N -0.335 5.335 21 C -0.066 4.066 22 C 0.319 3.681 23 O -0.461 6.461 24 C -0.169 4.169 25 H 0.161 0.839 26 C -0.114 4.114 27 C -0.231 4.231 28 C -0.172 4.172 29 C -0.145 4.145 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.155 0.845 47 H 0.093 0.907 48 H 0.121 0.879 49 H 0.139 0.861 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.784 -27.598 -14.246 31.068 hybrid contribution 0.110 1.845 -0.232 1.863 sum 0.894 -25.753 -14.479 29.558 Atomic orbital electron populations 1.22330 0.87834 1.01440 0.99981 1.61428 1.07984 1.12051 1.43330 1.21774 1.02357 0.89383 0.93832 1.20799 0.83708 0.82250 0.90450 1.90477 1.45113 1.65416 1.49104 1.41922 1.50159 1.11497 1.17627 1.19638 1.34389 0.96430 0.95711 0.90512 1.26023 0.96312 0.96574 1.02390 1.69671 1.38142 1.12687 1.35622 0.84935 0.78599 0.77381 0.77452 1.19540 1.19477 1.19995 1.22899 1.02110 0.93990 0.91242 1.22076 0.97459 0.90645 0.84928 0.91886 1.86635 1.26448 1.84888 1.38385 1.22173 1.01448 0.81395 0.98321 1.47748 1.21849 1.10265 1.53625 1.22066 0.96032 0.92001 0.96464 1.20305 0.80378 0.89841 0.77580 1.90677 1.55760 1.54985 1.44649 1.22055 1.00730 0.92993 1.01094 0.83866 1.22759 0.94492 1.00489 0.93690 1.21475 0.85870 1.08457 1.07315 1.22560 0.97337 0.96491 1.00765 1.22830 0.93336 0.97432 1.00917 0.91965 0.92547 0.95728 0.86526 0.91842 0.77002 0.91318 0.87531 0.93508 0.76704 0.90326 0.86303 0.92431 0.89217 0.88803 0.88834 0.84472 0.90724 0.87930 0.86089 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 8.96 127.69 1.14 2.35 16 2 N -0.52 -17.90 4.37 -927.07 -4.05 -21.95 16 3 C 0.06 2.05 5.45 85.56 0.47 2.52 16 4 C 0.44 21.67 7.47 87.66 0.66 22.32 16 5 O -0.62 -35.37 13.91 -3.08 -0.04 -35.41 16 6 N -0.57 -30.13 5.29 -306.99 -1.62 -31.76 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 10 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 11 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 15 C 0.03 0.62 4.62 86.30 0.40 1.01 16 16 C 0.11 2.54 3.08 30.59 0.09 2.64 16 17 H 0.06 1.94 6.55 -2.39 -0.02 1.93 16 18 O -0.56 -13.32 12.76 -148.98 -1.90 -15.22 16 19 C 0.09 1.53 5.11 86.38 0.44 1.98 16 20 N -0.60 -10.36 2.84 -846.75 -2.40 -12.76 16 21 C 0.08 0.72 9.65 127.77 1.23 1.95 16 22 C 0.53 11.89 7.46 87.66 0.65 12.54 16 23 O -0.58 -18.05 15.82 -3.04 -0.05 -18.10 16 24 C -0.15 -2.37 4.80 -11.54 -0.06 -2.42 16 25 H 0.14 1.68 7.26 -2.39 -0.02 1.66 16 26 C -0.08 -0.92 10.24 30.61 0.31 -0.60 16 27 C -0.23 -3.92 5.06 -52.18 -0.26 -4.18 16 28 C -0.13 -2.55 10.16 30.59 0.31 -2.24 16 29 C -0.11 -1.46 10.53 30.59 0.32 -1.14 16 30 H 0.06 2.23 6.47 -2.39 -0.02 2.22 16 31 H 0.06 2.54 5.82 -2.39 -0.01 2.53 16 32 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.12 3.48 7.93 -2.39 -0.02 3.46 16 34 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 35 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 36 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.11 1.91 7.93 -2.39 -0.02 1.89 16 38 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.38 6.00 9.05 -74.05 -0.67 5.33 16 40 H 0.08 1.58 7.42 -2.39 -0.02 1.56 16 41 H 0.12 1.14 7.89 -2.39 -0.02 1.12 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.09 0.51 6.64 -2.39 -0.02 0.50 16 44 H 0.09 0.48 7.89 -2.39 -0.02 0.46 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.14 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -81.05 412.27 -1.20 -82.25 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.44 Total: 39.06 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.99 Total: 18.01 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -7.79 Total: -116.36 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: -1.99 Total: -68.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.05 -1.20 -82.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486351008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.373 kcal (2) G-P(sol) polarization free energy of solvation -81.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds