Wall clock time and date at job start Tue Mar 31 2020 23:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99959 * 2 1 4 4 O 1.21277 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.99979 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.46907 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.45470 * 52.39939 * 6 5 3 8 8 C 1.54516 * 110.50713 * 174.99745 * 6 5 3 9 9 C 1.54483 * 104.06036 * 118.64681 * 8 6 5 10 10 O 1.44427 * 104.80136 * 23.97856 * 9 8 6 11 11 C 1.44420 * 105.27798 * 319.48738 * 10 9 8 12 12 C 1.46495 * 120.00203 * 180.02562 * 2 1 3 13 13 H 1.08999 * 110.28772 * 180.67039 * 12 2 1 14 14 C 1.54260 * 110.32475 * 58.54827 * 12 2 1 15 15 C 1.54385 * 105.05983 * 241.10515 * 14 12 2 16 16 N 1.48562 * 104.59280 * 23.85215 * 15 14 12 17 17 C 1.46904 * 110.99488 * 200.95921 * 16 15 14 18 18 C 1.50698 * 109.46831 * 176.48693 * 17 16 15 19 19 O 1.21301 * 119.99859 * 6.06352 * 18 17 16 20 20 N 1.34777 * 120.00048 * 186.06009 * 18 17 16 21 21 C 1.37098 * 120.00105 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00264 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00022 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00498 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46890 * 89.99582 * 25 23 21 27 27 H 1.48500 * 109.47369 * 210.00096 * 25 23 21 28 28 H 1.48497 * 109.46907 * 330.00368 * 25 23 21 29 29 C 1.48557 * 104.21961 * 320.51625 * 16 15 14 30 30 H 1.09004 * 109.46855 * 89.99512 * 1 2 3 31 31 H 1.08995 * 109.47061 * 209.99786 * 1 2 3 32 32 H 1.08999 * 109.46850 * 329.99794 * 1 2 3 33 33 H 1.09002 * 109.46918 * 299.99969 * 5 3 2 34 34 H 1.09004 * 109.46717 * 59.99727 * 5 3 2 35 35 H 1.08997 * 110.51204 * 237.29009 * 8 6 5 36 36 H 1.08994 * 110.50914 * 0.02562 * 8 6 5 37 37 H 1.08995 * 110.37003 * 142.80585 * 9 8 6 38 38 H 1.08997 * 110.37046 * 265.03672 * 9 8 6 39 39 H 1.09005 * 110.36930 * 281.68291 * 11 10 9 40 40 H 1.09001 * 110.37330 * 159.34557 * 11 10 9 41 41 H 1.09007 * 110.32000 * 359.97438 * 14 12 2 42 42 H 1.08996 * 110.33097 * 122.20670 * 14 12 2 43 43 H 1.09004 * 110.40950 * 142.63128 * 15 14 12 44 44 H 1.08997 * 110.40898 * 264.95351 * 15 14 12 45 45 H 1.08993 * 109.47317 * 296.49051 * 17 16 15 46 46 H 1.09000 * 109.47052 * 56.49479 * 17 16 15 47 47 H 0.96992 * 120.00205 * 0.02562 * 20 18 17 48 48 H 0.96988 * 120.00494 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.41469 * 280.70320 * 29 16 15 50 50 H 1.09001 * 110.40875 * 158.26654 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4724 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.1008 3.5202 -0.8081 8 6 1.6356 4.9836 -0.1245 9 6 1.9955 5.7336 1.1772 10 8 3.2425 5.1464 1.6086 11 6 3.1010 3.7301 1.3638 12 6 2.1975 -1.2687 -0.0006 13 1 3.2718 -1.0848 0.0115 14 6 1.8118 -2.1095 -1.2350 15 6 1.1981 -3.4051 -0.6619 16 7 0.7230 -3.0264 0.6938 17 6 0.5714 -4.2116 1.5484 18 6 0.1725 -3.7820 2.9367 19 8 -0.0784 -2.6169 3.1624 20 7 0.0945 -4.6924 3.9275 21 6 -0.2689 -4.3017 5.1904 22 1 -0.4923 -3.2643 5.3913 23 6 -0.3488 -5.2401 6.2120 24 7 -0.0766 -6.5023 5.9675 25 14 -0.8433 -4.7076 7.9329 26 1 -2.3190 -4.7955 8.0733 27 1 -0.1972 -5.5972 8.9311 28 1 -0.4068 -3.3069 8.1622 29 6 1.7845 -2.1269 1.2144 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 0.7584 2.5303 -0.8892 34 1 0.7590 2.5298 0.8908 35 1 1.9907 5.5362 -0.9943 36 1 0.5595 4.8217 -0.1865 37 1 2.1258 6.7974 0.9786 38 1 1.2218 5.5806 1.9296 39 1 2.4978 3.2683 2.1455 40 1 4.0804 3.2549 1.3085 41 1 1.0771 -1.5784 -1.8402 42 1 2.6969 -2.3399 -1.8278 43 1 0.3625 -3.7352 -1.2792 44 1 1.9542 -4.1875 -0.5971 45 1 -0.1986 -4.8623 1.1341 46 1 1.5176 -4.7510 1.5929 47 1 0.2955 -5.6240 3.7471 48 1 -0.1320 -7.1573 6.6807 49 1 2.6329 -2.7086 1.5749 50 1 1.3904 -1.4946 2.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494815621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:06 Heat of formation + Delta-G solvation = -103.913353 kcal Electronic energy + Delta-G solvation = -30358.837758 eV Core-core repulsion = 26193.255046 eV Total energy + Delta-G solvation = -4165.582712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.55583 -39.53602 -38.66097 -37.50323 -35.03522 -33.94737 -33.72762 -31.57341 -31.11818 -30.00883 -28.69480 -27.17521 -27.03859 -25.98348 -24.22154 -23.14658 -21.61162 -21.09729 -20.33545 -19.28794 -18.87963 -17.90858 -17.40870 -16.78845 -16.26384 -16.04187 -15.80639 -15.54217 -15.35933 -15.13794 -14.98049 -14.53387 -14.09215 -13.92445 -13.80291 -13.41827 -13.22308 -12.98062 -12.73851 -12.54923 -12.34917 -12.13243 -11.98493 -11.90002 -11.86931 -11.71829 -11.55506 -11.48195 -11.32752 -11.21346 -11.04809 -10.91521 -10.83925 -10.78520 -10.42208 -10.25415 -9.95373 -9.73796 -9.52245 -8.68451 -8.46684 -8.10912 -7.98369 -6.45247 -3.86216 2.58341 2.96361 3.15202 3.24337 3.29847 3.80859 3.86041 4.01655 4.20777 4.24034 4.46523 4.56672 4.61797 4.71271 4.74560 4.84017 5.04278 5.07257 5.09445 5.11398 5.22203 5.26263 5.36361 5.38690 5.39689 5.45643 5.50552 5.53342 5.56962 5.67767 5.68081 5.74718 5.79067 5.83376 5.83763 5.96196 6.00410 6.02190 6.16166 6.22630 6.37916 6.59922 6.63672 7.02357 7.14873 7.42759 7.51714 8.02104 8.14632 8.57281 9.14223 9.50205 10.01316 10.72434 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.002619 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.036374 B =10687.424400 C =12536.424669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.511 3.489 4 O -0.547 6.547 5 C -0.132 4.132 6 C -0.105 4.105 7 H 0.091 0.909 8 C -0.153 4.153 9 C 0.043 3.957 10 O -0.378 6.378 11 C 0.053 3.947 12 C 0.135 3.865 13 H 0.104 0.896 14 C -0.131 4.131 15 C 0.028 3.972 16 N -0.485 5.485 17 C 0.034 3.966 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.026 3.974 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.047 0.953 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 13.789 -16.293 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.300 3.700 4 O -0.425 6.425 5 C -0.172 4.172 6 C -0.124 4.124 7 H 0.110 0.890 8 C -0.190 4.190 9 C -0.034 4.034 10 O -0.297 6.297 11 C -0.023 4.023 12 C 0.030 3.970 13 H 0.122 0.878 14 C -0.170 4.170 15 C -0.100 4.100 16 N -0.209 5.209 17 C -0.098 4.098 18 C 0.228 3.772 19 O -0.464 6.464 20 N -0.199 5.199 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.103 4.103 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.719 14.758 -15.908 21.767 hybrid contribution 0.230 -1.250 0.712 1.457 sum 1.949 13.508 -15.196 20.425 Atomic orbital electron populations 1.21952 0.78668 1.05202 1.01422 1.47842 1.07512 1.05229 1.72367 1.20666 0.88049 0.85482 0.75818 1.90667 1.13970 1.87449 1.50453 1.21806 0.98885 0.91802 1.04667 1.22299 0.97143 0.93003 0.99979 0.89017 1.23036 1.01121 0.95783 0.99093 1.23400 0.87074 0.98337 0.94628 1.89135 1.35218 1.20081 1.85278 1.23521 1.02208 0.82022 0.94568 1.21868 0.97320 0.82991 0.94786 0.87828 1.22672 1.00988 0.95924 0.97438 1.23176 0.98797 0.96274 0.91744 1.65208 1.41034 1.13735 1.00968 1.22079 1.01034 0.92640 0.94031 1.19690 0.85085 0.86846 0.85613 1.90483 1.54771 1.18032 1.83163 1.41869 1.59943 1.09741 1.08376 1.19681 1.42726 0.96127 0.84294 0.87923 1.25265 0.97457 0.94901 1.00296 1.69607 1.49020 1.01309 1.34325 0.85862 0.78614 0.78618 0.81236 1.20378 1.20918 1.19411 1.23572 0.93203 0.95982 0.97495 0.93236 0.87560 0.91662 0.88564 0.88464 0.90495 0.90233 0.89306 0.92270 0.92371 0.88176 0.90484 0.90852 0.90019 0.93766 0.89054 0.93318 0.77495 0.91838 0.93484 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.30 59.85 0.56 1.32 16 2 N -0.60 -7.43 2.74 -172.35 -0.47 -7.91 16 3 C 0.51 6.47 7.49 -10.98 -0.08 6.39 16 4 O -0.55 -8.56 14.39 5.56 0.08 -8.48 16 5 C -0.13 -1.20 3.47 -27.88 -0.10 -1.29 16 6 C -0.11 -1.01 2.71 -89.05 -0.24 -1.25 16 7 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 8 C -0.15 -1.13 6.74 -25.16 -0.17 -1.30 16 9 C 0.04 0.37 7.63 37.94 0.29 0.66 16 10 O -0.38 -4.65 11.65 -35.23 -0.41 -5.06 16 11 C 0.05 0.62 6.38 37.93 0.24 0.87 16 12 C 0.13 1.78 3.46 -66.55 -0.23 1.55 16 13 H 0.10 1.47 6.96 -51.93 -0.36 1.11 16 14 C -0.13 -1.42 6.48 -25.35 -0.16 -1.58 16 15 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 16 N -0.49 -7.40 4.06 -231.41 -0.94 -8.34 16 17 C 0.03 0.57 5.39 -4.97 -0.03 0.55 16 18 C 0.44 10.00 7.43 -10.99 -0.08 9.92 16 19 O -0.58 -14.78 14.01 5.54 0.08 -14.70 16 20 N -0.56 -13.92 5.29 -10.96 -0.06 -13.97 16 21 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 C 0.03 0.41 4.51 -2.19 -0.01 0.40 16 30 H 0.05 0.44 7.91 -51.93 -0.41 0.03 16 31 H 0.11 1.48 6.27 -51.93 -0.33 1.16 16 32 H 0.06 0.61 6.44 -51.93 -0.33 0.27 16 33 H 0.10 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.10 0.82 7.22 -51.93 -0.37 0.44 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.68 7.74 -51.93 -0.40 0.28 16 40 H 0.10 1.30 7.80 -51.93 -0.40 0.89 16 41 H 0.08 0.79 7.24 -51.93 -0.38 0.41 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.05 0.77 7.98 -51.93 -0.41 0.35 16 47 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 50 H 0.11 2.14 6.43 -51.93 -0.33 1.81 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -32.00 392.54 -8.54 -40.54 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.17 Total: 10.99 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -0.27 Total: 8.73 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.75 Total: -53.75 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.25 Total: -28.25 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.00 -8.54 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494815621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.371 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds