Wall clock time and date at job start Tue Mar 31 2020 22:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99730 * 2 1 4 4 C 1.53004 * 109.47041 * 269.99598 * 3 2 1 5 5 H 1.08999 * 109.47399 * 305.00143 * 4 3 2 6 6 O 1.42899 * 109.46870 * 65.00328 * 4 3 2 7 7 C 1.53004 * 109.47234 * 185.00211 * 4 3 2 8 8 N 1.46502 * 109.46912 * 180.02562 * 7 4 3 9 9 C 1.36940 * 119.99484 * 179.72331 * 8 7 4 10 10 H 1.07997 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00063 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99931 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47242 * 60.00620 * 13 11 9 15 15 H 1.48502 * 109.47453 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47632 * 300.00386 * 13 11 9 17 17 C 1.34770 * 120.00102 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00155 * 175.18489 * 17 2 1 19 19 C 1.50698 * 120.00005 * 355.19125 * 17 2 1 20 20 H 1.09003 * 109.87580 * 32.32765 * 19 17 2 21 21 C 1.54325 * 109.88025 * 271.14818 * 19 17 2 22 22 C 1.55156 * 102.94262 * 218.38579 * 21 19 17 23 23 C 1.54908 * 101.58127 * 35.50591 * 22 21 19 24 24 N 1.47024 * 109.88410 * 153.34190 * 19 17 2 25 25 C 1.34775 * 125.65105 * 298.39325 * 24 19 17 26 26 O 1.21283 * 119.99569 * 359.97438 * 25 24 19 27 27 C 1.50694 * 120.00380 * 180.02562 * 25 24 19 28 28 C 1.53004 * 117.49562 * 248.74788 * 27 25 24 29 29 C 1.53001 * 117.50309 * 180.08723 * 27 25 24 30 30 H 1.09002 * 109.46557 * 94.87459 * 1 2 3 31 31 H 1.08993 * 109.47209 * 214.87513 * 1 2 3 32 32 H 1.08997 * 109.47053 * 334.88106 * 1 2 3 33 33 H 1.09003 * 109.47408 * 150.00153 * 3 2 1 34 34 H 1.08997 * 109.47817 * 29.99621 * 3 2 1 35 35 H 0.96701 * 114.00337 * 60.00191 * 6 4 3 36 36 H 1.09002 * 109.46722 * 60.00135 * 7 4 3 37 37 H 1.08999 * 109.46872 * 300.00255 * 7 4 3 38 38 H 0.96998 * 119.99971 * 0.02562 * 8 7 4 39 39 H 0.96998 * 119.99913 * 179.97438 * 12 11 9 40 40 H 1.09000 * 110.72212 * 336.75511 * 21 19 17 41 41 H 1.09005 * 110.71731 * 100.02702 * 21 19 17 42 42 H 1.09002 * 111.00916 * 277.42816 * 22 21 19 43 43 H 1.09003 * 111.03463 * 153.58738 * 22 21 19 44 44 H 1.09003 * 110.37173 * 204.14895 * 23 22 21 45 45 H 1.09004 * 110.37095 * 81.82480 * 23 22 21 46 46 H 1.09002 * 115.55127 * 34.41226 * 27 25 24 47 47 H 1.08996 * 117.50044 * 359.97438 * 28 27 25 48 48 H 1.09007 * 117.49539 * 145.01839 * 28 27 25 49 49 H 1.08999 * 117.50218 * 214.97876 * 29 27 25 50 50 H 1.09002 * 117.49392 * 359.97241 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9643 0.9131 -1.9816 6 8 1.2061 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5675 3.3913 -2.8257 9 6 4.3233 4.5052 -3.0772 10 1 4.7399 5.0714 -2.2574 11 6 4.5546 4.9059 -4.3860 12 7 4.0472 4.2154 -5.3851 13 14 5.5849 6.4257 -4.7291 14 1 6.9459 6.2387 -4.1654 15 1 5.6811 6.6378 -6.1957 16 1 4.9465 7.6092 -4.0991 17 6 2.1389 -1.1671 0.0005 18 8 3.3485 -1.1690 -0.0876 19 6 1.3894 -2.4699 0.1105 20 1 0.4165 -2.3796 -0.3726 21 6 1.2086 -2.8475 1.5959 22 6 1.4042 -4.3867 1.5894 23 6 2.4921 -4.5574 0.4999 24 7 2.1639 -3.5473 -0.5226 25 6 2.5161 -3.6023 -1.8224 26 8 2.1902 -2.7106 -2.5771 27 6 3.3139 -4.7721 -2.3381 28 6 4.7591 -4.5080 -2.7657 29 6 3.6844 -4.7751 -3.8226 30 1 -0.3632 -0.0873 -1.0240 31 1 -0.3633 -0.8430 0.5876 32 1 -0.3633 0.9305 0.4362 33 1 3.1499 1.1385 0.5138 34 1 1.6084 2.0285 0.5137 35 1 0.6955 2.6949 -1.6543 36 1 4.2746 2.7521 -0.9571 37 1 2.8121 3.7654 -0.9054 38 1 3.1899 2.8849 -3.5618 39 1 4.2085 4.4956 -6.2996 40 1 1.9675 -2.3648 2.2117 41 1 0.2078 -2.5874 1.9408 42 1 0.4835 -4.8964 1.3055 43 1 1.7614 -4.7397 2.5568 44 1 2.4468 -5.5589 0.0721 45 1 3.4807 -4.3668 0.9177 46 1 3.0945 -5.7328 -1.8722 47 1 5.1326 -3.4881 -2.6743 48 1 5.4903 -5.2952 -2.5814 49 1 3.7090 -5.7378 -4.3332 50 1 3.3507 -3.9311 -4.4263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507509756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:35 Heat of formation + Delta-G solvation = -65.584489 kcal Electronic energy + Delta-G solvation = -30946.943371 eV Core-core repulsion = 26783.022723 eV Total energy + Delta-G solvation = -4163.920648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.97625 -39.42149 -37.94023 -37.03438 -36.02094 -35.15245 -33.89298 -32.00545 -31.34145 -30.43366 -28.96158 -26.74619 -25.62193 -25.24793 -23.30774 -22.58994 -22.49369 -21.70002 -21.05323 -19.95424 -18.59620 -17.84042 -17.59984 -17.05822 -16.41487 -16.23847 -15.71453 -15.49667 -15.11273 -14.84992 -14.57876 -14.37024 -14.35175 -13.99615 -13.62878 -13.48552 -13.38911 -12.95305 -12.87981 -12.84340 -12.59096 -12.36549 -12.29977 -12.02132 -11.91948 -11.72687 -11.64617 -11.40523 -11.34238 -10.85731 -10.73735 -10.72998 -10.65940 -10.54161 -10.13096 -9.98528 -9.90325 -9.70811 -9.58331 -8.80148 -8.79347 -8.40779 -6.81785 -5.64750 -2.94295 2.30870 2.50875 2.77429 3.08152 3.50192 3.53629 3.55688 3.73815 3.98583 4.10418 4.35837 4.46447 4.56487 4.65059 4.65504 4.75062 4.78440 4.86715 4.89352 4.93801 5.03668 5.16821 5.19752 5.24837 5.28763 5.36972 5.39272 5.44263 5.48132 5.54998 5.64994 5.69135 5.71665 5.79177 5.84882 5.85145 5.98745 6.05597 6.13972 6.34915 6.54465 6.63516 6.87952 7.26246 7.38038 7.76309 8.08236 8.17426 8.22345 8.53207 9.64042 10.23541 10.59705 11.57552 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.002932 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.303620 B = 9546.890907 C =11022.678149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.605 5.605 3 C 0.090 3.910 4 C 0.087 3.913 5 H 0.100 0.900 6 O -0.548 6.548 7 C 0.128 3.872 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.068 0.932 11 C -0.014 4.014 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.511 3.489 18 O -0.526 6.526 19 C 0.120 3.880 20 H 0.097 0.903 21 C -0.119 4.119 22 C -0.131 4.131 23 C 0.102 3.898 24 N -0.601 5.601 25 C 0.560 3.440 26 O -0.520 6.520 27 C -0.190 4.190 28 C -0.149 4.149 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.364 0.636 36 H 0.025 0.975 37 H 0.018 0.982 38 H 0.390 0.610 39 H 0.255 0.745 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -23.364 18.054 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C -0.034 4.034 4 C 0.027 3.973 5 H 0.118 0.882 6 O -0.351 6.351 7 C -0.001 4.001 8 N -0.369 5.369 9 C -0.374 4.374 10 H 0.086 0.914 11 C -0.210 4.210 12 N -0.577 5.577 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.297 3.703 18 O -0.401 6.401 19 C 0.013 3.987 20 H 0.114 0.886 21 C -0.158 4.158 22 C -0.169 4.169 23 C -0.021 4.021 24 N -0.336 5.336 25 C 0.349 3.651 26 O -0.395 6.395 27 C -0.211 4.211 28 C -0.186 4.186 29 C -0.185 4.185 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.209 0.791 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.224 0.776 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.139 0.861 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.773 -23.219 17.096 30.139 hybrid contribution 0.240 1.205 0.014 1.228 sum -8.533 -22.015 17.109 29.158 Atomic orbital electron populations 1.21833 0.79428 1.02443 1.02526 1.47652 1.07021 1.05712 1.73409 1.22238 0.98087 0.84420 0.98629 1.22527 0.85147 0.98029 0.91616 0.88168 1.86658 1.32312 1.58818 1.57325 1.21213 0.96279 0.92940 0.89713 1.42246 1.61904 1.31956 1.00843 1.19180 1.23993 1.02422 0.91777 0.91379 1.24769 1.01262 0.99372 0.95591 1.69687 1.49157 1.40671 0.98216 0.86258 0.80143 0.82844 0.76857 1.21304 1.21674 1.21337 1.20719 0.88200 0.85171 0.76232 1.90708 1.14074 1.86881 1.48431 1.21543 0.95447 0.86478 0.95257 0.88570 1.22592 1.03652 0.96757 0.92752 1.22794 0.99349 0.95379 0.99336 1.22361 0.98946 0.92120 0.88668 1.48122 1.55679 1.21931 1.07899 1.19387 0.78969 0.86788 0.79970 1.90796 1.54043 1.39163 1.55449 1.22091 0.99943 0.98209 1.00896 1.22971 0.89552 1.04014 1.02105 1.23000 1.01478 1.04217 0.89836 0.91661 0.91900 0.90775 0.89211 0.90203 0.79067 0.95726 0.96427 0.77598 0.93485 0.89846 0.89053 0.90093 0.89224 0.90143 0.90849 0.86102 0.87859 0.87791 0.87893 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.47 59.85 0.57 1.34 16 2 N -0.60 -8.17 2.84 -181.57 -0.52 -8.68 16 3 C 0.09 1.31 5.07 -4.04 -0.02 1.29 16 4 C 0.09 1.67 3.30 -26.73 -0.09 1.58 16 5 H 0.10 2.35 8.14 -51.93 -0.42 1.93 16 6 O -0.55 -10.34 12.64 -35.23 -0.45 -10.78 16 7 C 0.13 2.80 5.92 -4.04 -0.02 2.77 16 8 N -0.72 -20.27 5.49 -59.90 -0.33 -20.60 16 9 C -0.24 -7.28 9.99 -15.06 -0.15 -7.43 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -30.12 13.06 55.49 0.72 -29.39 16 13 Si 0.91 23.53 29.55 -169.99 -5.02 18.51 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C 0.51 7.74 5.99 -10.99 -0.07 7.68 16 18 O -0.53 -10.16 16.10 5.55 0.09 -10.07 16 19 C 0.12 1.34 2.37 -68.10 -0.16 1.18 16 20 H 0.10 1.03 6.67 -51.93 -0.35 0.68 16 21 C -0.12 -0.80 6.22 -24.90 -0.15 -0.96 16 22 C -0.13 -0.63 7.08 -24.58 -0.17 -0.81 16 23 C 0.10 0.74 6.69 -2.53 -0.02 0.73 16 24 N -0.60 -7.10 2.76 -164.32 -0.45 -7.55 16 25 C 0.56 8.22 7.24 -10.99 -0.08 8.14 16 26 O -0.52 -10.20 16.09 5.55 0.09 -10.11 16 27 C -0.19 -2.06 5.53 -91.77 -0.51 -2.57 16 28 C -0.15 -1.60 10.24 -26.69 -0.27 -1.87 16 29 C -0.15 -1.60 10.05 -26.69 -0.27 -1.87 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.42 6.10 -51.93 -0.32 0.10 16 32 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 33 H 0.09 1.40 7.49 -51.93 -0.39 1.01 16 34 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 35 H 0.36 5.41 9.05 45.56 0.41 5.82 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.39 11.84 7.54 -40.82 -0.31 11.53 16 39 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 40 H 0.08 0.63 7.84 -51.93 -0.41 0.23 16 41 H 0.09 0.40 7.81 -51.93 -0.41 -0.01 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.42 7.01 -51.93 -0.36 0.05 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.12 0.91 7.07 -51.93 -0.37 0.54 16 47 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.11 1.48 7.67 -51.93 -0.40 1.08 16 LS Contribution 408.02 15.07 6.15 6.15 Total: -1.00 -41.16 408.02 -8.71 -49.86 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -7.48 Total: 13.98 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -1.51 Total: 8.68 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.57 Total: -66.22 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.27 Total: -30.96 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -41.16 -8.71 -49.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507509756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.721 kcal (2) G-P(sol) polarization free energy of solvation -41.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds