Wall clock time and date at job start Tue Mar 31 2020 23:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99825 * 2 1 4 4 C 1.53774 * 113.61029 * 150.00041 * 3 2 1 5 5 C 1.53786 * 87.08472 * 89.19930 * 4 3 2 6 6 C 1.50691 * 113.61528 * 139.97738 * 5 4 3 7 7 O 1.21286 * 120.00407 * 1.25271 * 6 5 4 8 8 N 1.34781 * 119.99747 * 181.53095 * 6 5 4 9 9 C 1.46498 * 119.99818 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47024 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46747 * 65.00494 * 10 9 8 12 12 N 1.46899 * 109.47138 * 305.00312 * 10 9 8 13 13 C 1.46906 * 110.99906 * 144.63066 * 12 10 9 14 14 C 1.50694 * 109.46869 * 174.67809 * 13 12 10 15 15 O 1.21284 * 120.00269 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99583 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00053 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99933 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00068 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99928 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99968 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47151 * 89.99967 * 21 19 17 23 23 H 1.48508 * 109.46851 * 209.99622 * 21 19 17 24 24 H 1.48498 * 109.47251 * 329.99734 * 21 19 17 25 25 C 1.53002 * 109.46923 * 184.99893 * 10 9 8 26 26 C 1.53000 * 117.49464 * 134.09673 * 25 10 9 27 27 C 1.52999 * 117.49546 * 65.43900 * 25 10 9 28 28 C 1.53780 * 87.16739 * 25.38668 * 5 4 3 29 29 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47012 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46905 * 60.00141 * 1 2 3 32 32 H 1.08990 * 112.85000 * 18.80075 * 3 2 1 33 33 H 1.09004 * 113.61856 * 334.64991 * 4 3 2 34 34 H 1.09003 * 113.61533 * 203.74841 * 4 3 2 35 35 H 1.09000 * 113.61259 * 270.79752 * 5 4 3 36 36 H 0.97002 * 120.00077 * 359.97438 * 8 6 5 37 37 H 1.08998 * 109.47622 * 300.00051 * 9 8 6 38 38 H 1.09000 * 109.47023 * 60.00148 * 9 8 6 39 39 H 1.00896 * 111.00172 * 20.67210 * 12 10 9 40 40 H 1.09000 * 109.46439 * 294.67437 * 13 12 10 41 41 H 1.08994 * 109.47181 * 54.67087 * 13 12 10 42 42 H 0.97004 * 120.00326 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00543 * 180.02562 * 20 19 17 44 44 H 1.08994 * 115.55455 * 279.76002 * 25 10 9 45 45 H 1.09007 * 117.50155 * 0.02562 * 26 25 10 46 46 H 1.09004 * 117.49758 * 145.02130 * 26 25 10 47 47 H 1.08999 * 117.49754 * 214.97083 * 27 25 10 48 48 H 1.09000 * 117.50114 * 359.97438 * 27 25 10 49 49 H 1.09008 * 113.61519 * 89.16233 * 28 5 4 50 50 H 1.09005 * 113.61272 * 220.06015 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3755 1.3719 0.7045 5 6 4.0064 1.0352 -0.6570 6 6 5.2712 1.8029 -0.9426 7 8 5.7079 2.5799 -0.1201 8 7 5.9143 1.6301 -2.1145 9 6 7.1436 2.3768 -2.3924 10 6 7.6678 1.9983 -3.7791 11 1 6.9556 2.3229 -4.5377 12 7 7.8370 0.5412 -3.8577 13 6 7.5126 0.0454 -5.2020 14 6 7.8217 -1.4274 -5.2822 15 8 8.2687 -2.0068 -4.3150 16 7 7.6014 -2.1006 -6.4288 17 6 7.8831 -3.4404 -6.5020 18 1 8.2811 -3.9563 -5.6408 19 6 7.6555 -4.1346 -7.6840 20 7 7.9250 -5.4189 -7.7540 21 14 6.9664 -3.2423 -9.1733 22 1 8.0847 -2.7097 -9.9925 23 1 6.1623 -4.1879 -9.9886 24 1 6.1044 -2.1201 -8.7230 25 6 9.0154 2.6820 -4.0191 26 6 10.1454 1.8310 -4.6018 27 6 10.1892 2.2600 -3.1331 28 6 2.7536 1.6495 -1.3035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.3138 2.0788 0.3237 33 1 3.5176 0.5948 1.4556 34 1 3.6305 2.3667 1.0698 35 1 4.1107 -0.0347 -0.8373 36 1 5.5631 1.0114 -2.7738 37 1 6.9341 3.4461 -2.3622 38 1 7.8948 2.1325 -1.6413 39 1 7.2819 0.0744 -3.1564 40 1 6.4533 0.2058 -5.4025 41 1 8.1075 0.5823 -5.9407 42 1 7.2443 -1.6371 -7.2025 43 1 7.7665 -5.9035 -8.5791 44 1 8.9646 3.7275 -4.3231 45 1 9.9287 0.7841 -4.8147 46 1 10.8383 2.3167 -5.2889 47 1 10.9110 3.0278 -2.8546 48 1 10.0014 1.4957 -2.3791 49 1 2.8381 2.7205 -1.4883 50 1 2.3942 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566711274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:12 Heat of formation + Delta-G solvation = -55.644322 kcal Electronic energy + Delta-G solvation = -29722.071781 eV Core-core repulsion = 25558.582171 eV Total energy + Delta-G solvation = -4163.489610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.71173 -39.35204 -38.55221 -37.83298 -35.90273 -35.14564 -34.13621 -33.41484 -31.68170 -29.90218 -27.49738 -26.55388 -26.06732 -25.76976 -23.76025 -23.51455 -22.04636 -21.08773 -19.95367 -19.52444 -19.33854 -18.42684 -17.94185 -16.63039 -16.45146 -16.23493 -15.93841 -15.73421 -15.60290 -15.35904 -14.95241 -14.75166 -14.41282 -14.21850 -14.03833 -13.71825 -13.44541 -13.17104 -12.85275 -12.71036 -12.55640 -12.39673 -12.26859 -12.16060 -11.86735 -11.74898 -11.70357 -11.36725 -11.21183 -11.07703 -11.04025 -10.77340 -10.62211 -10.18531 -10.02789 -9.99438 -9.89946 -9.71507 -9.59573 -9.24726 -8.64591 -8.24787 -8.19502 -6.33152 -3.84745 2.46432 2.96687 2.99388 3.04558 3.12927 3.28595 3.70446 3.91043 3.95107 4.08026 4.12221 4.25677 4.37805 4.52678 4.70212 4.78414 4.85480 4.90061 4.99691 5.01603 5.04195 5.05019 5.18192 5.28172 5.31730 5.34364 5.36029 5.37706 5.44983 5.53341 5.62971 5.66463 5.71838 5.74188 5.81928 5.87083 5.89225 5.91596 6.03098 6.25094 6.36583 6.60251 6.84130 6.99591 7.27354 7.44907 7.55635 8.05122 8.12197 8.57289 8.92995 9.40040 9.80116 10.79990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008110 B = 0.002965 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.896555 B = 9439.903987 C =12137.079409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.062 3.938 4 C -0.116 4.116 5 C -0.132 4.132 6 C 0.526 3.474 7 O -0.541 6.541 8 N -0.731 5.731 9 C 0.116 3.884 10 C 0.106 3.894 11 H 0.059 0.941 12 N -0.661 5.661 13 C 0.045 3.955 14 C 0.449 3.551 15 O -0.561 6.561 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.166 4.166 28 C -0.142 4.142 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.399 0.601 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 19.245 9.379 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.004 3.996 4 C -0.154 4.154 5 C -0.153 4.153 6 C 0.313 3.687 7 O -0.418 6.418 8 N -0.384 5.384 9 C -0.008 4.008 10 C -0.004 4.004 11 H 0.077 0.923 12 N -0.296 5.296 13 C -0.088 4.088 14 C 0.234 3.766 15 O -0.443 6.443 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.175 4.175 26 C -0.199 4.199 27 C -0.203 4.203 28 C -0.180 4.180 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.172 0.828 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.570 19.061 10.394 24.147 hybrid contribution -1.791 0.483 -1.869 2.633 sum -12.361 19.544 8.525 24.646 Atomic orbital electron populations 1.22836 0.80734 1.03035 1.00000 1.87918 1.19868 1.26265 1.94506 1.23084 0.94715 0.85439 0.96375 1.23103 0.92605 1.03956 0.95700 1.22737 0.91631 1.01453 0.99509 1.20502 0.84945 0.82262 0.81033 1.90684 1.67501 1.37252 1.46337 1.46114 1.27082 1.46023 1.19166 1.21605 0.85924 0.96368 0.96868 1.21230 0.95252 0.88772 0.95192 0.92347 1.59962 1.62417 1.02362 1.04847 1.21856 0.99068 0.95802 0.92044 1.19672 0.84846 0.87731 0.84309 1.90583 1.47984 1.69371 1.36325 1.42213 1.58959 1.10172 1.11656 1.19426 1.40657 0.82278 1.00990 0.86281 1.25039 0.97763 0.95541 0.97795 1.69617 1.47455 1.07213 1.27792 0.86676 0.79598 0.79697 0.83407 1.19606 1.20205 1.19577 1.22193 0.89680 0.98364 1.07308 1.22986 0.99233 1.01958 0.95756 1.22793 0.99616 1.03093 0.94774 1.23419 0.94575 1.01503 0.98548 0.89378 0.93918 0.93905 0.90361 0.89906 0.87614 0.86194 0.76597 0.90841 0.90180 0.82818 0.93801 0.89046 0.79753 0.91597 0.88091 0.86609 0.89994 0.89811 0.88305 0.88919 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.48 10.63 -35.23 -0.37 -3.85 16 3 C 0.06 0.50 4.38 -25.83 -0.11 0.39 16 4 C -0.12 -1.06 7.23 -25.92 -0.19 -1.25 16 5 C -0.13 -1.27 4.08 -90.96 -0.37 -1.64 16 6 C 0.53 6.17 7.35 -10.99 -0.08 6.09 16 7 O -0.54 -8.11 15.91 5.55 0.09 -8.03 16 8 N -0.73 -7.61 4.92 -60.29 -0.30 -7.91 16 9 C 0.12 1.25 5.19 -4.04 -0.02 1.23 16 10 C 0.11 1.14 2.65 -67.71 -0.18 0.96 16 11 H 0.06 0.57 7.71 -51.93 -0.40 0.17 16 12 N -0.66 -9.16 4.44 -107.99 -0.48 -9.64 16 13 C 0.04 0.68 5.12 -4.98 -0.03 0.65 16 14 C 0.45 9.67 7.83 -10.99 -0.09 9.58 16 15 O -0.56 -14.54 15.89 5.55 0.09 -14.45 16 16 N -0.59 -13.56 5.09 -10.97 -0.06 -13.62 16 17 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 21 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 25 C -0.16 -1.69 5.79 -90.62 -0.52 -2.21 16 26 C -0.16 -2.05 9.42 -26.69 -0.25 -2.30 16 27 C -0.17 -1.96 9.59 -26.69 -0.26 -2.21 16 28 C -0.14 -1.12 7.47 -25.83 -0.19 -1.31 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.00 7.45 -51.93 -0.39 0.61 16 35 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 3.71 7.58 -40.82 -0.31 3.41 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.00 7.52 -51.93 -0.39 0.61 16 39 H 0.35 5.08 6.70 -39.29 -0.26 4.82 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.26 7.31 -51.93 -0.38 0.88 16 42 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.12 1.82 6.03 -51.93 -0.31 1.51 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.10 1.33 7.93 -51.93 -0.41 0.92 16 49 H 0.09 0.68 8.09 -51.92 -0.42 0.26 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 407.12 15.07 6.14 6.14 Total: -1.00 -33.77 407.12 -8.40 -42.17 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -8.12 Total: 17.94 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.44 Total: 1.68 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.06 Total: -55.88 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.20 Total: -26.33 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.77 -8.40 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566711274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.474 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds