Wall clock time and date at job start Tue Mar 31 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33355 * 117.94756 * 2 1 4 4 O 1.21283 * 118.24596 * 357.77902 * 3 2 1 5 5 C 1.50170 * 123.50998 * 177.75303 * 3 2 1 6 6 C 1.53072 * 109.89336 * 17.58238 * 5 3 2 7 7 C 1.53343 * 108.42508 * 311.10127 * 6 5 3 8 8 C 1.45750 * 117.94647 * 179.97438 * 2 1 3 9 9 H 1.08994 * 109.30353 * 78.99754 * 8 2 1 10 10 C 1.50702 * 109.30093 * 319.40801 * 8 2 1 11 11 O 1.21277 * 119.99990 * 339.99892 * 10 8 2 12 12 N 1.34777 * 119.99547 * 159.99944 * 10 8 2 13 13 C 1.46921 * 120.63637 * 359.97438 * 12 10 8 14 14 C 1.53197 * 108.77571 * 126.41142 * 13 12 10 15 15 C 1.53036 * 109.31196 * 54.63680 * 14 13 12 16 16 C 1.53039 * 109.53761 * 298.63428 * 15 14 13 17 17 C 1.53002 * 109.49766 * 181.31846 * 16 15 14 18 18 O 1.42905 * 109.47079 * 65.15925 * 17 16 15 19 19 N 1.46504 * 109.52387 * 301.39652 * 16 15 14 20 20 C 1.36936 * 119.99954 * 299.91907 * 19 16 15 21 21 H 1.08000 * 120.00302 * 0.02562 * 20 19 16 22 22 C 1.38813 * 119.99564 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99753 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00204 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47328 * 89.99797 * 24 22 20 26 26 H 1.48508 * 109.46850 * 209.99774 * 24 22 20 27 27 H 1.48500 * 109.47080 * 329.99591 * 24 22 20 28 28 C 1.46932 * 120.62704 * 180.02562 * 12 10 8 29 29 H 1.08992 * 109.46970 * 270.02208 * 1 2 3 30 30 H 1.08997 * 109.46662 * 30.02349 * 1 2 3 31 31 H 1.08997 * 109.46615 * 150.01898 * 1 2 3 32 32 H 1.09002 * 109.40105 * 137.71331 * 5 3 2 33 33 H 1.09002 * 109.40470 * 257.54081 * 5 3 2 34 34 H 1.08999 * 109.66748 * 70.83469 * 6 5 3 35 35 H 1.08994 * 109.67461 * 191.33112 * 6 5 3 36 36 H 1.09008 * 109.60255 * 307.77425 * 7 6 5 37 37 H 1.08998 * 109.60699 * 187.28650 * 7 6 5 38 38 H 1.08996 * 109.59171 * 246.19806 * 13 12 10 39 39 H 1.09005 * 109.58701 * 6.48489 * 13 12 10 40 40 H 1.09003 * 109.49577 * 174.59111 * 14 13 12 41 41 H 1.09008 * 109.49435 * 294.65105 * 14 13 12 42 42 H 1.09005 * 109.45971 * 178.61756 * 15 14 13 43 43 H 1.08999 * 109.46051 * 58.65888 * 15 14 13 44 44 H 1.09004 * 109.46930 * 305.16152 * 17 16 15 45 45 H 1.09000 * 109.47312 * 185.16095 * 17 16 15 46 46 H 0.96705 * 113.99788 * 180.02562 * 18 17 16 47 47 H 0.97000 * 120.00000 * 119.92418 * 19 16 15 48 48 H 0.97002 * 120.00010 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58686 * 113.79934 * 28 12 10 50 50 H 1.09003 * 109.58797 * 353.37384 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4159 2.1854 -0.0414 5 6 3.5838 1.3240 0.0491 6 6 4.2494 0.0013 -0.3386 7 6 3.5948 -1.1258 0.4691 8 6 2.1481 -1.2875 0.0006 9 1 2.1435 -1.6983 -1.0090 10 6 1.4274 -2.2333 0.9265 11 8 0.6886 -1.7973 1.7837 12 7 1.6041 -3.5636 0.8018 13 6 2.4954 -4.1069 -0.2321 14 6 3.5123 -5.0393 0.4338 15 6 2.7685 -6.1030 1.2445 16 6 1.9431 -5.4263 2.3413 17 6 1.2258 -6.4923 3.1719 18 8 2.1914 -7.2855 3.8652 19 7 2.8283 -4.6447 3.2083 20 6 3.8388 -5.2654 3.8931 21 1 3.9834 -6.3310 3.7937 22 6 4.6778 -4.5246 4.7142 23 7 5.6488 -5.1213 5.3728 24 14 4.4281 -2.6814 4.8856 25 1 3.4974 -2.4104 6.0105 26 1 5.7342 -2.0279 5.1553 27 1 3.8544 -2.1404 3.6272 28 6 0.9080 -4.4983 1.6966 29 1 -0.3633 0.0004 1.0276 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3632 -0.8902 -0.5135 32 1 3.8945 2.1034 -0.6468 33 1 3.8878 1.5984 1.0593 34 1 4.1093 -0.1815 -1.4040 35 1 5.3144 0.0458 -0.1110 36 1 3.6096 -0.8722 1.5292 37 1 4.1383 -2.0563 0.3056 38 1 1.9103 -4.6661 -0.9621 39 1 3.0173 -3.2900 -0.7307 40 1 4.1182 -5.5233 -0.3323 41 1 4.1569 -4.4611 1.0959 42 1 3.4891 -6.7826 1.6995 43 1 2.1060 -6.6644 0.5856 44 1 0.6368 -7.1306 2.5132 45 1 0.5673 -6.0086 3.8933 46 1 1.8068 -7.9836 4.4129 47 1 2.6987 -3.6875 3.2974 48 1 6.2349 -4.6037 5.9469 49 1 0.1936 -5.0893 1.1235 50 1 0.3842 -3.9399 2.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570293991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:03 Heat of formation + Delta-G solvation = -113.730595 kcal Electronic energy + Delta-G solvation = -32969.918480 eV Core-core repulsion = 28803.910060 eV Total energy + Delta-G solvation = -4166.008420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.27993 -40.96090 -39.43030 -37.40689 -37.20821 -35.65497 -35.04425 -33.87556 -32.78809 -31.70044 -30.68638 -28.22885 -27.12411 -26.68910 -25.49496 -25.04167 -23.35162 -23.10255 -21.09422 -19.95839 -19.78582 -19.50375 -18.46978 -17.99866 -17.71294 -17.63599 -16.89076 -16.60796 -16.30566 -16.06441 -15.95110 -15.55065 -15.28898 -15.18093 -14.88214 -14.74766 -14.56733 -14.48683 -14.27464 -13.87039 -13.82240 -13.55191 -13.36220 -13.13983 -13.07143 -13.00768 -12.74449 -12.65240 -12.51471 -12.12983 -12.08172 -11.89744 -11.78207 -11.71970 -11.48868 -11.34288 -11.22683 -10.81972 -10.71611 -10.54734 -9.82560 -9.58868 -9.16843 -7.84854 -5.13412 1.27657 1.35271 1.37104 1.38538 1.39912 1.73992 2.10351 2.53231 3.22568 3.37731 3.41789 3.51102 3.56434 3.66488 3.71510 3.88548 3.98931 4.05860 4.15574 4.27152 4.27786 4.37313 4.45351 4.48772 4.54174 4.54608 4.62965 4.64714 4.67539 4.73445 4.77126 4.84703 4.87700 4.93746 4.97889 4.98741 5.02813 5.18422 5.21330 5.31417 5.49985 5.60782 5.71567 6.12470 6.22721 6.36625 6.45809 6.94985 7.06304 7.11087 7.30956 8.00276 8.15209 9.37375 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.004830 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.527685 B = 5795.253103 C = 6797.013676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.589 5.589 3 C 0.511 3.489 4 O -0.598 6.598 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.137 4.137 8 C 0.133 3.867 9 H 0.143 0.857 10 C 0.498 3.502 11 O -0.574 6.574 12 N -0.593 5.593 13 C 0.103 3.897 14 C -0.127 4.127 15 C -0.111 4.111 16 C 0.181 3.819 17 C 0.071 3.929 18 O -0.564 6.564 19 N -0.734 5.734 20 C -0.156 4.156 21 H 0.095 0.905 22 C -0.072 4.072 23 N -0.990 5.990 24 Si 0.924 3.076 25 H -0.309 1.309 26 H -0.302 1.302 27 H -0.263 1.263 28 C 0.117 3.883 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.372 0.628 47 H 0.352 0.648 48 H 0.247 0.753 49 H 0.114 0.886 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 1.557 -20.652 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.320 5.320 3 C 0.302 3.698 4 O -0.480 6.480 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.175 4.175 8 C 0.026 3.974 9 H 0.160 0.840 10 C 0.286 3.714 11 O -0.453 6.453 12 N -0.325 5.325 13 C -0.018 4.018 14 C -0.165 4.165 15 C -0.150 4.150 16 C 0.090 3.910 17 C -0.009 4.009 18 O -0.369 6.369 19 N -0.375 5.375 20 C -0.288 4.288 21 H 0.112 0.888 22 C -0.261 4.261 23 N -0.645 5.645 24 Si 0.757 3.243 25 H -0.237 1.237 26 H -0.230 1.230 27 H -0.189 1.189 28 C -0.006 4.006 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.219 0.781 47 H 0.184 0.816 48 H 0.056 0.944 49 H 0.131 0.869 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.904 2.542 -20.502 22.119 hybrid contribution -0.383 0.795 1.967 2.155 sum -8.287 3.337 -18.536 20.576 Atomic orbital electron populations 1.21646 0.79274 1.02921 1.01746 1.47063 1.07920 1.05282 1.71759 1.20854 0.92453 0.81891 0.74645 1.90675 1.67837 1.36746 1.52707 1.21764 0.88353 1.01777 1.05514 1.21675 1.01104 0.90377 1.01427 1.22037 0.92084 1.03123 1.00250 1.21209 0.92807 0.82515 1.00872 0.83983 1.21186 0.81806 0.83449 0.84968 1.90707 1.40326 1.77195 1.37118 1.48047 1.45724 1.04478 1.34229 1.22222 0.91701 0.98855 0.89062 1.21777 0.98001 0.97420 0.99315 1.21749 0.99192 0.97706 0.96372 1.20393 0.90139 0.90334 0.90085 1.22650 0.90517 0.93062 0.94677 1.86894 1.35282 1.49214 1.65508 1.42858 1.35527 1.05572 1.53571 1.19334 1.01451 0.94042 1.13934 0.88776 1.25128 0.99665 0.99222 1.02115 1.69820 1.22955 1.35143 1.36544 0.85877 0.75486 0.85326 0.77602 1.23724 1.22978 1.18906 1.21726 0.93852 0.91156 0.93839 0.93820 0.90953 0.89825 0.85908 0.88650 0.87730 0.87928 0.93813 0.87040 0.87417 0.87578 0.88919 0.93707 0.94032 0.89729 0.91189 0.95575 0.78063 0.81607 0.94422 0.86852 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.25 8.69 127.77 1.11 3.36 16 2 N -0.59 -15.01 2.96 -831.55 -2.46 -17.47 16 3 C 0.51 14.04 7.47 87.71 0.66 14.69 16 4 O -0.60 -21.02 16.18 -3.04 -0.05 -21.07 16 5 C -0.13 -2.57 6.03 29.71 0.18 -2.39 16 6 C -0.11 -1.51 6.03 30.73 0.19 -1.33 16 7 C -0.14 -2.82 5.05 30.68 0.15 -2.66 16 8 C 0.13 2.75 2.25 44.36 0.10 2.85 16 9 H 0.14 1.71 6.81 -2.39 -0.02 1.69 16 10 C 0.50 13.71 6.19 87.66 0.54 14.25 16 11 O -0.57 -21.04 13.74 -3.02 -0.04 -21.08 16 12 N -0.59 -13.89 2.87 -818.80 -2.35 -16.24 16 13 C 0.10 1.60 5.87 86.36 0.51 2.11 16 14 C -0.13 -2.92 5.93 30.67 0.18 -2.74 16 15 C -0.11 -3.04 4.43 30.62 0.14 -2.90 16 16 C 0.18 5.73 0.68 3.70 0.00 5.74 16 17 C 0.07 2.15 6.09 71.98 0.44 2.59 16 18 O -0.56 -20.65 9.92 -148.98 -1.48 -22.13 16 19 N -0.73 -31.86 4.03 -302.91 -1.22 -33.08 16 20 C -0.16 -8.37 8.62 84.03 0.72 -7.65 16 21 H 0.09 5.52 5.52 -2.91 -0.02 5.51 16 22 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 23 N -0.99 -63.97 13.97 21.65 0.30 -63.66 16 24 Si 0.92 48.23 27.74 68.60 1.90 50.14 16 25 H -0.31 -16.86 7.11 99.48 0.71 -16.15 16 26 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 27 H -0.26 -12.71 6.52 99.48 0.65 -12.06 16 28 C 0.12 3.05 5.15 86.38 0.44 3.49 16 29 H 0.04 1.39 6.95 -2.39 -0.02 1.37 16 30 H 0.07 1.90 7.13 -2.39 -0.02 1.88 16 31 H 0.08 1.73 7.75 -2.39 -0.02 1.72 16 32 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 0.90 8.13 -2.39 -0.02 0.88 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 37 H 0.11 2.00 6.74 -2.39 -0.02 1.98 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 1.12 4.58 -2.38 -0.01 1.11 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.43 7.53 -2.38 -0.02 1.41 16 42 H 0.04 1.48 6.98 -2.38 -0.02 1.47 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.37 10.23 9.12 -74.05 -0.68 9.55 16 47 H 0.35 16.31 5.51 -92.71 -0.51 15.80 16 48 H 0.25 15.57 8.31 -92.71 -0.77 14.79 16 49 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.07 2.15 7.01 -2.39 -0.02 2.13 16 Total: -1.00 -86.59 375.57 0.16 -86.43 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.27 Total: 32.57 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 5.83 Total: 25.61 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.73 Total: -130.46 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.57 Total: -64.27 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.90 Total: 50.14 kcal Total: -86.59 0.16 -86.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570293991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.305 kcal (2) G-P(sol) polarization free energy of solvation -86.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds