Wall clock time and date at job start Tue Mar 31 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33350 * 117.94454 * 2 1 4 4 O 1.21278 * 118.24686 * 357.82684 * 3 2 1 5 5 C 1.50176 * 123.50645 * 177.79982 * 3 2 1 6 6 C 1.53072 * 109.89035 * 17.58412 * 5 3 2 7 7 C 1.53271 * 108.24655 * 311.03370 * 6 5 3 8 8 C 1.45749 * 117.94424 * 180.02562 * 2 1 3 9 9 H 1.09000 * 109.30376 * 78.95123 * 8 2 1 10 10 C 1.50698 * 109.30684 * 319.36243 * 8 2 1 11 11 O 1.21287 * 119.99857 * 339.58811 * 10 8 2 12 12 N 1.34771 * 120.00285 * 159.58118 * 10 8 2 13 13 C 1.46919 * 120.63242 * 0.02562 * 12 10 8 14 14 C 1.53195 * 108.77845 * 233.58225 * 13 12 10 15 15 C 1.53039 * 109.31257 * 305.36660 * 14 13 12 16 16 C 1.53046 * 109.52798 * 61.36716 * 15 14 13 17 17 C 1.53001 * 109.49566 * 178.67884 * 16 15 14 18 18 O 1.42901 * 109.47027 * 300.00002 * 17 16 15 19 19 N 1.46496 * 109.49552 * 58.57912 * 16 15 14 20 20 C 1.36946 * 120.00115 * 60.00259 * 19 16 15 21 21 H 1.07995 * 119.99532 * 359.97438 * 20 19 16 22 22 C 1.38805 * 120.00201 * 179.97438 * 20 19 16 23 23 N 1.31619 * 120.00229 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99887 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47325 * 89.99623 * 24 22 20 26 26 H 1.48501 * 109.46944 * 209.99696 * 24 22 20 27 27 H 1.48499 * 109.47262 * 329.99612 * 24 22 20 28 28 C 1.46931 * 120.63145 * 179.97438 * 12 10 8 29 29 H 1.09003 * 109.47171 * 269.97348 * 1 2 3 30 30 H 1.08994 * 109.47468 * 29.97544 * 1 2 3 31 31 H 1.09000 * 109.46955 * 149.97694 * 1 2 3 32 32 H 1.08988 * 109.40259 * 137.71442 * 5 3 2 33 33 H 1.09001 * 109.40219 * 257.45913 * 5 3 2 34 34 H 1.08998 * 109.67413 * 70.83462 * 6 5 3 35 35 H 1.09007 * 109.67234 * 191.33359 * 6 5 3 36 36 H 1.09001 * 109.74378 * 307.94457 * 7 6 5 37 37 H 1.09008 * 109.41900 * 187.49181 * 7 6 5 38 38 H 1.08997 * 109.59005 * 113.79701 * 13 12 10 39 39 H 1.09002 * 109.70256 * 353.43937 * 13 12 10 40 40 H 1.08997 * 109.50026 * 185.40903 * 14 13 12 41 41 H 1.09006 * 109.51801 * 65.33221 * 14 13 12 42 42 H 1.09002 * 109.46050 * 181.38302 * 15 14 13 43 43 H 1.09004 * 109.46034 * 301.35518 * 15 14 13 44 44 H 1.08997 * 109.47031 * 59.99920 * 17 16 15 45 45 H 1.09004 * 109.46593 * 180.02562 * 17 16 15 46 46 H 0.96702 * 113.99702 * 180.02562 * 18 17 16 47 47 H 0.96999 * 120.00132 * 239.99796 * 19 16 15 48 48 H 0.97000 * 119.99943 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.58959 * 246.20295 * 28 12 10 50 50 H 1.09003 * 109.58181 * 6.48778 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1780 0.0000 4 8 1.4158 2.1854 -0.0405 5 6 3.5838 1.3240 0.0481 6 6 4.2491 0.0014 -0.3407 7 6 3.5936 -1.1221 0.4700 8 6 2.1480 -1.2876 -0.0006 9 1 2.1427 -1.6978 -1.0104 10 6 1.4281 -2.2339 0.9253 11 8 0.6956 -1.7981 1.7882 12 7 1.5980 -3.5644 0.7944 13 6 2.4823 -4.1074 -0.2457 14 6 1.6991 -5.1310 -1.0738 15 6 1.1035 -6.1877 -0.1407 16 6 0.1373 -5.5184 0.8395 17 6 -0.4827 -6.5799 1.7505 18 8 -1.1935 -7.5323 0.9569 19 7 -0.9216 -4.8351 0.0926 20 6 -1.7397 -5.5480 -0.7428 21 1 -1.6039 -6.6138 -0.8513 22 6 -2.7433 -4.9006 -1.4501 23 7 -3.5293 -5.5857 -2.2535 24 14 -2.9777 -3.0568 -1.2630 25 1 -2.1511 -2.3477 -2.2725 26 1 -4.4087 -2.7165 -1.4674 27 1 -2.5597 -2.6405 0.0998 28 6 0.9034 -4.4995 1.6898 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 3.8940 2.1035 -0.6476 33 1 3.8884 1.5994 1.0578 34 1 4.1082 -0.1810 -1.4060 35 1 5.3143 0.0458 -0.1137 36 1 3.6064 -0.8672 1.5297 37 1 4.1395 -2.0517 0.3085 38 1 3.3393 -4.5935 0.2205 39 1 2.8271 -3.3008 -0.8928 40 1 2.3691 -5.6113 -1.7869 41 1 0.8963 -4.6266 -1.6118 42 1 0.5662 -6.9309 -0.7298 43 1 1.9049 -6.6748 0.4149 44 1 0.3058 -7.0867 2.3068 45 1 -1.1710 -6.1027 2.4481 46 1 -1.6138 -8.2361 1.4699 47 1 -1.0434 -3.8777 0.1898 48 1 -4.2304 -5.1332 -2.7480 49 1 1.6318 -5.0176 2.3136 50 1 0.2060 -3.9500 2.3221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570293992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:08 Heat of formation + Delta-G solvation = -84.954305 kcal Electronic energy + Delta-G solvation = -32867.224675 eV Core-core repulsion = 28702.464089 eV Total energy + Delta-G solvation = -4164.760586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22871 -39.81543 -38.13811 -36.37239 -35.93168 -34.23639 -33.96816 -32.17261 -31.56075 -30.39260 -29.25213 -27.20698 -26.01124 -25.58107 -24.34120 -23.21257 -22.53540 -21.94231 -19.94414 -18.80036 -18.47584 -17.82282 -17.41595 -16.80002 -16.58987 -16.41762 -15.78135 -15.33030 -15.17780 -14.72577 -14.51027 -14.25404 -14.08523 -13.95548 -13.81432 -13.62111 -13.54039 -13.07377 -12.82324 -12.61728 -12.47714 -12.30520 -12.24282 -12.06992 -11.97779 -11.75519 -11.38683 -11.33574 -11.28297 -10.93132 -10.85551 -10.52962 -10.46646 -10.25602 -10.14220 -10.00180 -9.67209 -9.50481 -9.01447 -8.84260 -8.70823 -8.48073 -7.21394 -5.63918 -2.99077 2.41017 2.51566 2.80864 3.08583 3.39420 3.46811 3.51172 4.15870 4.25534 4.31483 4.43169 4.60262 4.65207 4.77626 4.85834 4.92777 5.04356 5.07764 5.19800 5.30177 5.33752 5.37534 5.40622 5.47123 5.48328 5.56820 5.61569 5.64458 5.74488 5.75310 5.77009 5.82869 5.88988 5.93414 5.99347 6.10850 6.18337 6.24010 6.27600 6.55894 6.59532 6.82715 6.98056 7.29721 7.41333 8.03501 8.14587 8.20254 8.33362 8.58163 9.35676 10.04146 10.20624 11.54199 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.004744 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.703831 B = 5900.824843 C = 7153.472020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.584 5.584 3 C 0.517 3.483 4 O -0.554 6.554 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.127 4.127 8 C 0.125 3.875 9 H 0.101 0.899 10 C 0.506 3.494 11 O -0.527 6.527 12 N -0.594 5.594 13 C 0.103 3.897 14 C -0.130 4.130 15 C -0.115 4.115 16 C 0.195 3.805 17 C 0.076 3.924 18 O -0.533 6.533 19 N -0.731 5.731 20 C -0.214 4.214 21 H 0.116 0.884 22 C 0.000 4.000 23 N -0.937 5.937 24 Si 0.863 3.137 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.355 0.645 47 H 0.359 0.641 48 H 0.255 0.745 49 H 0.072 0.928 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.221 3.652 6.245 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.317 5.317 3 C 0.305 3.695 4 O -0.432 6.432 5 C -0.174 4.174 6 C -0.159 4.159 7 C -0.165 4.165 8 C 0.017 3.983 9 H 0.119 0.881 10 C 0.292 3.708 11 O -0.403 6.403 12 N -0.327 5.327 13 C -0.019 4.019 14 C -0.168 4.168 15 C -0.155 4.155 16 C 0.103 3.897 17 C -0.005 4.005 18 O -0.336 6.336 19 N -0.373 5.373 20 C -0.344 4.344 21 H 0.134 0.866 22 C -0.194 4.194 23 N -0.586 5.586 24 Si 0.694 3.306 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.011 4.011 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.200 0.800 47 H 0.192 0.808 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.574 4.655 6.065 21.014 hybrid contribution -0.645 0.779 0.532 1.142 sum 18.930 5.434 6.597 20.770 Atomic orbital electron populations 1.21841 0.78488 1.02709 1.03468 1.46921 1.07976 1.04501 1.72274 1.20112 0.90903 0.82433 0.76024 1.90716 1.66572 1.35370 1.50560 1.21676 0.91082 0.99717 1.04935 1.21660 1.00380 0.93129 1.00716 1.21882 0.92091 1.01002 1.01547 1.21025 0.93122 0.84137 0.99993 0.88146 1.20595 0.82273 0.82794 0.85181 1.90722 1.37900 1.76458 1.35243 1.47915 1.46010 1.04845 1.33944 1.21950 0.92461 0.97903 0.89596 1.21830 1.00042 0.96954 0.98010 1.21825 0.97420 0.98134 0.98118 1.19910 0.88774 0.90060 0.91002 1.22603 0.93813 0.90832 0.93294 1.86895 1.71515 1.39880 1.35286 1.42797 1.36114 1.06216 1.52203 1.19400 1.06578 0.94556 1.13871 0.86629 1.24622 0.98709 0.96068 0.99984 1.69672 1.22430 1.34082 1.32418 0.86880 0.77347 0.88750 0.77643 1.21498 1.21976 1.20324 1.21794 0.96156 0.91063 0.92055 0.90791 0.90415 0.91734 0.88002 0.88183 0.90580 0.89796 0.90077 0.88873 0.91282 0.90319 0.91616 0.89591 0.89945 0.93683 0.95612 0.94497 0.79961 0.80794 0.93461 0.91004 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 8.70 59.85 0.52 1.84 16 2 N -0.58 -8.52 2.96 -176.51 -0.52 -9.04 16 3 C 0.52 7.32 7.47 -11.87 -0.09 7.23 16 4 O -0.55 -10.01 16.18 5.56 0.09 -9.92 16 5 C -0.13 -1.20 6.02 -28.10 -0.17 -1.36 16 6 C -0.12 -0.78 6.04 -26.55 -0.16 -0.94 16 7 C -0.13 -1.01 5.08 -26.63 -0.14 -1.14 16 8 C 0.12 1.49 2.26 -69.53 -0.16 1.33 16 9 H 0.10 1.09 6.53 -51.93 -0.34 0.75 16 10 C 0.51 7.49 6.18 -10.99 -0.07 7.42 16 11 O -0.53 -9.74 13.77 5.55 0.08 -9.66 16 12 N -0.59 -8.01 2.87 -172.75 -0.50 -8.51 16 13 C 0.10 1.09 5.68 -3.71 -0.02 1.07 16 14 C -0.13 -1.80 5.93 -26.61 -0.16 -1.95 16 15 C -0.12 -1.79 4.39 -26.69 -0.12 -1.91 16 16 C 0.20 3.34 0.68 -131.68 -0.09 3.25 16 17 C 0.08 1.23 6.08 37.16 0.23 1.46 16 18 O -0.53 -9.85 9.98 -35.23 -0.35 -10.20 16 19 N -0.73 -16.20 4.02 -47.10 -0.19 -16.39 16 20 C -0.21 -5.72 8.77 -15.06 -0.13 -5.86 16 21 H 0.12 3.35 5.54 -52.49 -0.29 3.05 16 22 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 23 N -0.94 -29.39 13.97 55.49 0.78 -28.61 16 24 Si 0.86 22.51 27.74 -169.99 -4.71 17.79 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 27 H -0.28 -7.08 6.52 56.52 0.37 -6.71 16 28 C 0.11 1.63 5.15 -3.69 -0.02 1.62 16 29 H 0.07 1.36 6.96 -51.93 -0.36 1.00 16 30 H 0.08 1.32 7.13 -51.93 -0.37 0.95 16 31 H 0.06 1.16 7.75 -51.93 -0.40 0.76 16 32 H 0.10 0.80 8.14 -51.94 -0.42 0.38 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 0.53 7.08 -51.92 -0.37 0.16 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.67 5.02 -51.93 -0.26 0.41 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.53 7.53 -51.93 -0.39 1.14 16 42 H 0.08 1.57 6.82 -51.93 -0.35 1.21 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.36 4.93 9.12 45.56 0.42 5.35 16 47 H 0.36 8.41 5.51 -40.82 -0.22 8.19 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 1.56 7.00 -51.93 -0.36 1.20 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -36.93 375.95 -7.46 -44.38 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.13 Total: 12.53 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -0.66 Total: 11.96 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.43 Total: -62.55 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.19 Total: -29.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.93 -7.46 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570293992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.570 kcal (2) G-P(sol) polarization free energy of solvation -36.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds