Wall clock time and date at job start Tue Mar 31 2020 22:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33350 * 117.94454 * 2 1 4 4 O 1.21278 * 118.24686 * 357.82684 * 3 2 1 5 5 C 1.50176 * 123.50645 * 177.79982 * 3 2 1 6 6 C 1.53072 * 109.89035 * 17.58412 * 5 3 2 7 7 C 1.53271 * 108.24655 * 311.03370 * 6 5 3 8 8 C 1.45749 * 117.94424 * 180.02562 * 2 1 3 9 9 H 1.09000 * 109.30376 * 78.95123 * 8 2 1 10 10 C 1.50698 * 109.30684 * 319.36243 * 8 2 1 11 11 O 1.21287 * 119.99857 * 339.58811 * 10 8 2 12 12 N 1.34771 * 120.00285 * 159.58118 * 10 8 2 13 13 C 1.46919 * 120.63242 * 0.02562 * 12 10 8 14 14 C 1.53195 * 108.77845 * 233.58225 * 13 12 10 15 15 C 1.53039 * 109.31257 * 305.36660 * 14 13 12 16 16 C 1.53046 * 109.52798 * 61.36716 * 15 14 13 17 17 C 1.53001 * 109.49566 * 178.67884 * 16 15 14 18 18 O 1.42901 * 109.47027 * 300.00002 * 17 16 15 19 19 N 1.46496 * 109.49552 * 58.57912 * 16 15 14 20 20 C 1.36946 * 120.00115 * 60.00259 * 19 16 15 21 21 H 1.07995 * 119.99532 * 359.97438 * 20 19 16 22 22 C 1.38805 * 120.00201 * 179.97438 * 20 19 16 23 23 N 1.31619 * 120.00229 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99887 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47325 * 89.99623 * 24 22 20 26 26 H 1.48501 * 109.46944 * 209.99696 * 24 22 20 27 27 H 1.48499 * 109.47262 * 329.99612 * 24 22 20 28 28 C 1.46931 * 120.63145 * 179.97438 * 12 10 8 29 29 H 1.09003 * 109.47171 * 269.97348 * 1 2 3 30 30 H 1.08994 * 109.47468 * 29.97544 * 1 2 3 31 31 H 1.09000 * 109.46955 * 149.97694 * 1 2 3 32 32 H 1.08988 * 109.40259 * 137.71442 * 5 3 2 33 33 H 1.09001 * 109.40219 * 257.45913 * 5 3 2 34 34 H 1.08998 * 109.67413 * 70.83462 * 6 5 3 35 35 H 1.09007 * 109.67234 * 191.33359 * 6 5 3 36 36 H 1.09001 * 109.74378 * 307.94457 * 7 6 5 37 37 H 1.09008 * 109.41900 * 187.49181 * 7 6 5 38 38 H 1.08997 * 109.59005 * 113.79701 * 13 12 10 39 39 H 1.09002 * 109.70256 * 353.43937 * 13 12 10 40 40 H 1.08997 * 109.50026 * 185.40903 * 14 13 12 41 41 H 1.09006 * 109.51801 * 65.33221 * 14 13 12 42 42 H 1.09002 * 109.46050 * 181.38302 * 15 14 13 43 43 H 1.09004 * 109.46034 * 301.35518 * 15 14 13 44 44 H 1.08997 * 109.47031 * 59.99920 * 17 16 15 45 45 H 1.09004 * 109.46593 * 180.02562 * 17 16 15 46 46 H 0.96702 * 113.99702 * 180.02562 * 18 17 16 47 47 H 0.96999 * 120.00132 * 239.99796 * 19 16 15 48 48 H 0.97000 * 119.99943 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.58959 * 246.20295 * 28 12 10 50 50 H 1.09003 * 109.58181 * 6.48778 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1780 0.0000 4 8 1.4158 2.1854 -0.0405 5 6 3.5838 1.3240 0.0481 6 6 4.2491 0.0014 -0.3407 7 6 3.5936 -1.1221 0.4700 8 6 2.1480 -1.2876 -0.0006 9 1 2.1427 -1.6978 -1.0104 10 6 1.4281 -2.2339 0.9253 11 8 0.6956 -1.7981 1.7882 12 7 1.5980 -3.5644 0.7944 13 6 2.4823 -4.1074 -0.2457 14 6 1.6991 -5.1310 -1.0738 15 6 1.1035 -6.1877 -0.1407 16 6 0.1373 -5.5184 0.8395 17 6 -0.4827 -6.5799 1.7505 18 8 -1.1935 -7.5323 0.9569 19 7 -0.9216 -4.8351 0.0926 20 6 -1.7397 -5.5480 -0.7428 21 1 -1.6039 -6.6138 -0.8513 22 6 -2.7433 -4.9006 -1.4501 23 7 -3.5293 -5.5857 -2.2535 24 14 -2.9777 -3.0568 -1.2630 25 1 -2.1511 -2.3477 -2.2725 26 1 -4.4087 -2.7165 -1.4674 27 1 -2.5597 -2.6405 0.0998 28 6 0.9034 -4.4995 1.6898 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 3.8940 2.1035 -0.6476 33 1 3.8884 1.5994 1.0578 34 1 4.1082 -0.1810 -1.4060 35 1 5.3143 0.0458 -0.1137 36 1 3.6064 -0.8672 1.5297 37 1 4.1395 -2.0517 0.3085 38 1 3.3393 -4.5935 0.2205 39 1 2.8271 -3.3008 -0.8928 40 1 2.3691 -5.6113 -1.7869 41 1 0.8963 -4.6266 -1.6118 42 1 0.5662 -6.9309 -0.7298 43 1 1.9049 -6.6748 0.4149 44 1 0.3058 -7.0867 2.3068 45 1 -1.1710 -6.1027 2.4481 46 1 -1.6138 -8.2361 1.4699 47 1 -1.0434 -3.8777 0.1898 48 1 -4.2304 -5.1332 -2.7480 49 1 1.6318 -5.0176 2.3136 50 1 0.2060 -3.9500 2.3221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570293992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:07 Heat of formation + Delta-G solvation = -115.278367 kcal Electronic energy + Delta-G solvation = -32868.539625 eV Core-core repulsion = 28702.464089 eV Total energy + Delta-G solvation = -4166.075536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27518 -40.97147 -39.44216 -37.39291 -37.20272 -35.70505 -35.04989 -33.89266 -32.80041 -31.67657 -30.70627 -28.32314 -27.09620 -26.70321 -25.54177 -25.04572 -23.32059 -23.07646 -21.09176 -19.94153 -19.69523 -19.65429 -18.46889 -18.01184 -17.72224 -17.64815 -16.87592 -16.67565 -16.43670 -16.15028 -15.84031 -15.47570 -15.32312 -14.99904 -14.88620 -14.83298 -14.62052 -14.44825 -14.25850 -13.91903 -13.82881 -13.68451 -13.33380 -13.27165 -13.05767 -12.99152 -12.79278 -12.62954 -12.54146 -12.16517 -11.99350 -11.84831 -11.79109 -11.70615 -11.54282 -11.38216 -11.22511 -10.84435 -10.71434 -10.55464 -9.87762 -9.59625 -9.20166 -7.89555 -5.18106 1.24466 1.31155 1.32076 1.33753 1.46702 1.78301 2.03257 2.49003 3.24112 3.35176 3.43587 3.50336 3.58351 3.65237 3.77737 3.91404 4.00584 4.09185 4.13710 4.15781 4.25946 4.36263 4.40427 4.46982 4.53010 4.56628 4.63428 4.64910 4.69806 4.75500 4.78011 4.82668 4.90408 4.93698 4.96649 4.98355 5.01878 5.18095 5.28921 5.30990 5.49105 5.60516 5.70045 6.08596 6.24512 6.37442 6.41497 6.95548 7.06296 7.09503 7.27329 7.96845 8.11114 9.32643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.004744 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.703831 B = 5900.824843 C = 7153.472020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.589 5.589 3 C 0.507 3.493 4 O -0.604 6.604 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.121 4.121 8 C 0.121 3.879 9 H 0.116 0.884 10 C 0.498 3.502 11 O -0.574 6.574 12 N -0.593 5.593 13 C 0.104 3.896 14 C -0.130 4.130 15 C -0.109 4.109 16 C 0.180 3.820 17 C 0.073 3.927 18 O -0.567 6.567 19 N -0.736 5.736 20 C -0.163 4.163 21 H 0.095 0.905 22 C -0.070 4.070 23 N -0.988 5.988 24 Si 0.918 3.082 25 H -0.285 1.285 26 H -0.308 1.308 27 H -0.276 1.276 28 C 0.118 3.882 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.024 0.976 46 H 0.375 0.625 47 H 0.351 0.649 48 H 0.247 0.753 49 H 0.116 0.884 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.690 3.262 7.278 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.320 5.320 3 C 0.298 3.702 4 O -0.486 6.486 5 C -0.167 4.167 6 C -0.149 4.149 7 C -0.159 4.159 8 C 0.015 3.985 9 H 0.133 0.867 10 C 0.286 3.714 11 O -0.454 6.454 12 N -0.325 5.325 13 C -0.017 4.017 14 C -0.168 4.168 15 C -0.148 4.148 16 C 0.089 3.911 17 C -0.007 4.007 18 O -0.372 6.372 19 N -0.377 5.377 20 C -0.294 4.294 21 H 0.113 0.887 22 C -0.259 4.259 23 N -0.643 5.643 24 Si 0.751 3.249 25 H -0.212 1.212 26 H -0.236 1.236 27 H -0.202 1.202 28 C -0.005 4.005 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.222 0.778 47 H 0.183 0.817 48 H 0.056 0.944 49 H 0.134 0.866 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 25.145 4.220 7.136 26.477 hybrid contribution -2.288 0.758 0.313 2.430 sum 22.857 4.978 7.449 24.550 Atomic orbital electron populations 1.21523 0.81132 1.01412 1.01696 1.47091 1.06742 1.06168 1.71997 1.21266 0.93206 0.81310 0.74378 1.90687 1.68202 1.36977 1.52765 1.21774 0.86589 1.02094 1.06265 1.21707 1.01870 0.90450 1.00869 1.22003 0.89107 1.03475 1.01280 1.21375 0.95033 0.82071 1.00064 0.86694 1.21177 0.81760 0.83524 0.84963 1.90711 1.39969 1.77331 1.37380 1.48049 1.45860 1.04366 1.34199 1.22238 0.92309 0.98066 0.89066 1.21795 0.99471 0.97155 0.98380 1.21719 0.97672 0.97662 0.97747 1.20414 0.88061 0.91009 0.91566 1.22630 0.94730 0.90642 0.92704 1.86807 1.72249 1.40995 1.37193 1.42891 1.36960 1.05802 1.52078 1.19356 1.04842 0.93724 1.11478 0.88739 1.25125 1.00133 0.99030 1.01661 1.69812 1.24121 1.35236 1.35097 0.85959 0.76115 0.85339 0.77530 1.21197 1.23599 1.20178 1.21717 0.96632 0.90413 0.91749 0.92882 0.91266 0.93242 0.86743 0.86781 0.89760 0.86024 0.90715 0.85226 0.86620 0.87698 0.88968 0.94523 0.94128 0.89456 0.90905 0.95761 0.77783 0.81682 0.94355 0.86568 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 8.70 127.77 1.11 4.19 16 2 N -0.59 -16.79 2.96 -831.55 -2.46 -19.26 16 3 C 0.51 13.90 7.47 87.71 0.65 14.56 16 4 O -0.60 -22.28 16.18 -3.02 -0.05 -22.33 16 5 C -0.13 -1.84 6.02 29.71 0.18 -1.66 16 6 C -0.11 -0.81 6.04 30.71 0.19 -0.62 16 7 C -0.12 -1.29 5.08 30.66 0.16 -1.13 16 8 C 0.12 2.55 2.26 44.36 0.10 2.65 16 9 H 0.12 2.08 6.53 -2.39 -0.02 2.07 16 10 C 0.50 13.82 6.18 87.66 0.54 14.36 16 11 O -0.57 -21.29 13.77 -3.05 -0.04 -21.33 16 12 N -0.59 -13.98 2.87 -818.83 -2.35 -16.33 16 13 C 0.10 1.63 5.68 86.36 0.49 2.13 16 14 C -0.13 -3.16 5.93 30.67 0.18 -2.98 16 15 C -0.11 -3.06 4.39 30.62 0.13 -2.93 16 16 C 0.18 5.82 0.68 3.70 0.00 5.82 16 17 C 0.07 2.24 6.08 71.98 0.44 2.67 16 18 O -0.57 -20.66 9.98 -148.98 -1.49 -22.15 16 19 N -0.74 -32.84 4.02 -302.94 -1.22 -34.06 16 20 C -0.16 -8.92 8.77 84.03 0.74 -8.19 16 21 H 0.10 5.65 5.54 -2.91 -0.02 5.63 16 22 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 23 N -0.99 -64.92 13.97 21.65 0.30 -64.62 16 24 Si 0.92 49.21 27.74 68.60 1.90 51.12 16 25 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 26 H -0.31 -17.13 7.11 99.48 0.71 -16.43 16 27 H -0.28 -14.42 6.52 99.48 0.65 -13.77 16 28 C 0.12 3.09 5.15 86.37 0.44 3.53 16 29 H 0.05 2.09 6.96 -2.39 -0.02 2.07 16 30 H 0.07 2.52 7.13 -2.39 -0.02 2.50 16 31 H 0.05 1.86 7.75 -2.39 -0.02 1.85 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 0.55 8.13 -2.39 -0.02 0.53 16 35 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.13 0.49 7.08 -2.38 -0.02 0.47 16 38 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.14 5.02 -2.39 -0.01 1.13 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.04 1.26 7.53 -2.38 -0.02 1.24 16 42 H 0.04 1.49 6.82 -2.39 -0.02 1.48 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.37 10.17 9.12 -74.06 -0.68 9.49 16 47 H 0.35 16.73 5.51 -92.71 -0.51 16.22 16 48 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 49 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.07 2.14 7.00 -2.39 -0.02 2.13 16 Total: -1.00 -90.37 375.95 0.15 -90.22 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.27 Total: 30.10 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 5.82 Total: 28.63 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -5.72 Total: -134.27 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -1.58 Total: -65.80 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.90 Total: 51.12 kcal Total: -90.37 0.15 -90.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570293992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.058 kcal (2) G-P(sol) polarization free energy of solvation -90.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds