Wall clock time and date at job start Tue Mar 31 2020 23:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00006 * 2 1 4 4 C 1.53781 * 113.61388 * 150.00071 * 3 2 1 5 5 C 1.53781 * 87.08070 * 139.98235 * 4 3 2 6 6 C 1.50697 * 113.61630 * 219.93625 * 5 4 3 7 7 O 1.21288 * 120.00090 * 358.47236 * 6 5 4 8 8 N 1.34768 * 120.00434 * 178.46913 * 6 5 4 9 9 C 1.46502 * 120.00739 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47510 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85141 * 43.80758 * 10 9 8 12 12 C 1.53784 * 113.61101 * 175.00067 * 10 9 8 13 13 C 1.53783 * 87.07882 * 139.98045 * 12 10 9 14 14 H 1.09003 * 113.61448 * 89.11499 * 13 12 10 15 15 N 1.46899 * 113.61526 * 219.93200 * 13 12 10 16 16 C 1.46904 * 110.99942 * 204.99884 * 15 13 12 17 17 C 1.50698 * 109.47025 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00236 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00051 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99959 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00516 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00086 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00370 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47040 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46841 * 119.99708 * 24 22 20 27 27 H 1.48493 * 109.47337 * 240.00194 * 24 22 20 28 28 C 1.53775 * 113.61390 * 272.50002 * 10 9 8 29 29 C 1.53786 * 87.17350 * 334.52830 * 5 4 3 30 30 H 1.08996 * 109.46874 * 59.99756 * 1 2 3 31 31 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46662 * 299.99626 * 1 2 3 33 33 H 1.09003 * 112.90486 * 18.75199 * 3 2 1 34 34 H 1.08999 * 113.61181 * 25.43291 * 4 3 2 35 35 H 1.08998 * 113.61680 * 254.52843 * 4 3 2 36 36 H 1.09002 * 113.61445 * 89.11830 * 5 4 3 37 37 H 0.97004 * 120.00000 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.46835 * 300.00823 * 9 8 6 39 39 H 1.09008 * 109.46689 * 59.99994 * 9 8 6 40 40 H 1.09000 * 113.61576 * 254.52915 * 12 10 9 41 41 H 1.09003 * 113.61376 * 25.35319 * 12 10 9 42 42 H 1.00895 * 111.00313 * 328.95635 * 15 13 12 43 43 H 1.09000 * 109.47062 * 300.00198 * 16 15 13 44 44 H 1.09000 * 109.46763 * 60.00608 * 16 15 13 45 45 H 0.96999 * 119.99597 * 0.02562 * 19 17 16 46 46 H 0.96998 * 120.00408 * 179.97438 * 23 22 20 47 47 H 1.09005 * 113.61582 * 334.56105 * 28 10 9 48 48 H 1.08995 * 113.61744 * 105.47528 * 28 10 9 49 49 H 1.08992 * 113.61675 * 140.02412 * 29 5 4 50 50 H 1.09000 * 113.60973 * 270.92699 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3719 0.7045 5 6 3.8228 2.3181 -0.4222 6 6 5.2335 2.0731 -0.8922 7 8 5.9072 1.2128 -0.3658 8 7 5.7465 2.8097 -1.8974 9 6 7.1181 2.5719 -2.3539 10 6 7.4500 3.5352 -3.4953 11 1 7.1116 4.5531 -3.3020 12 6 8.9112 3.4510 -3.9671 13 6 8.3745 3.5993 -5.4005 14 1 8.2883 4.6350 -5.7295 15 7 9.0629 2.7458 -6.3780 16 6 8.9647 3.3097 -7.7309 17 6 9.6813 2.4092 -8.7038 18 8 10.2204 1.3969 -8.3091 19 7 9.7223 2.7281 -10.0126 20 6 10.3737 1.9086 -10.8977 21 1 10.8538 1.0072 -10.5464 22 6 10.4165 2.2376 -12.2470 23 7 9.8320 3.3341 -12.6748 24 14 11.3048 1.1214 -13.4530 25 1 11.8743 -0.0407 -12.7247 26 1 10.3462 0.6398 -14.4799 27 1 12.3993 1.8772 -14.1132 28 6 7.0536 3.0054 -4.8834 29 6 2.7548 1.6496 -1.3040 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.3143 2.0797 0.3228 34 1 3.9089 0.4213 0.7137 35 1 3.3385 1.8470 1.6848 36 1 3.6223 3.3693 -0.2149 37 1 5.2078 3.4980 -2.3182 38 1 7.8096 2.7361 -1.5276 39 1 7.2106 1.5446 -2.7065 40 1 9.5244 4.2912 -3.6413 41 1 9.3781 2.4855 -3.7720 42 1 10.0263 2.6003 -6.1159 43 1 7.9156 3.3910 -8.0154 44 1 9.4230 4.2986 -7.7464 45 1 9.2908 3.5375 -10.3283 46 1 9.8621 3.5641 -13.6167 47 1 7.0122 1.9177 -4.9402 48 1 6.1672 3.4860 -5.2974 49 1 2.2169 2.3488 -1.9441 50 1 3.1187 0.7748 -1.8429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656140061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:01 Heat of formation + Delta-G solvation = -79.994888 kcal Electronic energy + Delta-G solvation = -28091.297400 eV Core-core repulsion = 23926.751870 eV Total energy + Delta-G solvation = -4164.545530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77614 -39.58823 -38.64227 -38.02429 -36.19099 -35.05810 -34.03638 -33.18222 -31.19670 -28.90355 -27.47327 -26.50824 -26.17908 -25.80428 -25.22381 -23.95251 -21.67001 -21.26312 -20.07932 -19.59067 -19.06922 -18.06332 -17.86290 -16.62612 -16.53028 -16.19482 -16.00747 -15.65335 -15.40659 -15.30753 -15.10544 -14.70418 -14.46133 -14.30743 -13.93502 -13.70754 -13.51795 -13.37555 -12.90663 -12.68948 -12.48265 -12.38863 -12.28197 -12.23972 -11.65458 -11.61224 -11.53019 -11.50443 -11.33669 -11.18982 -11.06928 -10.94855 -10.72126 -10.36043 -10.33521 -10.21390 -10.03255 -9.85929 -9.51523 -9.29055 -8.43462 -8.05874 -7.95155 -6.41410 -3.82091 2.35888 2.84470 3.16811 3.27350 3.34927 3.42864 3.91741 3.95669 4.07488 4.10886 4.26662 4.29656 4.33894 4.40136 4.50616 4.65557 4.73671 4.76056 4.80278 4.91632 4.94111 5.04506 5.18486 5.21072 5.24771 5.25290 5.28987 5.33073 5.50490 5.51240 5.57864 5.63321 5.68611 5.77910 5.80281 5.81874 5.93289 5.96036 6.10672 6.20534 6.25486 6.39126 6.78444 7.23065 7.30205 7.55955 7.68291 7.97682 8.07346 8.61948 9.18639 9.55045 10.06604 10.76439 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.001490 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.069944 B =18785.160144 C =19718.400260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.523 3.477 7 O -0.537 6.537 8 N -0.726 5.726 9 C 0.130 3.870 10 C -0.125 4.125 11 H 0.093 0.907 12 C -0.132 4.132 13 C 0.059 3.941 14 H 0.071 0.929 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.120 4.120 29 C -0.139 4.139 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.351 0.649 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 5.912 25.133 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.003 3.997 4 C -0.151 4.151 5 C -0.160 4.160 6 C 0.309 3.691 7 O -0.414 6.414 8 N -0.377 5.377 9 C 0.007 3.993 10 C -0.144 4.144 11 H 0.111 0.889 12 C -0.170 4.170 13 C -0.051 4.051 14 H 0.089 0.911 15 N -0.289 5.289 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.159 4.159 29 C -0.177 4.177 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.171 0.829 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.237 4.072 25.480 31.031 hybrid contribution 0.253 1.532 -1.198 1.961 sum -16.984 5.604 24.283 30.158 Atomic orbital electron populations 1.22815 0.81115 1.02954 0.99909 1.87997 1.19688 1.27074 1.94486 1.23750 0.94053 0.85550 0.96382 1.23118 0.94420 1.00710 0.96877 1.22501 0.92250 1.01448 0.99766 1.20308 0.88257 0.81090 0.79450 1.90722 1.61296 1.32878 1.56471 1.46016 1.15799 1.39116 1.36785 1.21401 0.82132 0.99583 0.96192 1.22643 0.98161 0.99175 0.94448 0.88853 1.23197 0.95232 1.03060 0.95536 1.22979 0.96106 0.95254 0.90782 0.91147 1.60219 1.21390 1.47079 1.00183 1.21731 1.01148 0.95711 0.89668 1.19849 0.85900 0.88295 0.83372 1.90526 1.50121 1.27963 1.78089 1.41875 1.48844 1.23927 1.05487 1.19764 1.30006 1.05441 0.87615 0.87864 1.25260 0.97820 0.97059 0.97829 1.69621 1.44159 1.24184 1.16427 0.85799 0.78828 0.79864 0.79854 1.19205 1.20754 1.20783 1.23192 0.97110 1.02095 0.93476 1.23496 0.95814 1.01165 0.97209 0.93931 0.89584 0.94004 0.89140 0.87603 0.90412 0.86700 0.76577 0.91510 0.90921 0.91306 0.88799 0.82896 0.89704 0.93938 0.77492 0.91955 0.88867 0.91858 0.90282 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.37 -3.22 10.72 -35.23 -0.38 -3.60 16 3 C 0.06 0.39 4.32 -25.78 -0.11 0.28 16 4 C -0.11 -0.85 7.23 -25.92 -0.19 -1.04 16 5 C -0.14 -0.90 4.14 -90.96 -0.38 -1.27 16 6 C 0.52 5.12 7.35 -10.99 -0.08 5.04 16 7 O -0.54 -7.66 15.91 5.55 0.09 -7.57 16 8 N -0.73 -5.66 5.56 -60.29 -0.33 -6.00 16 9 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 10 C -0.13 -1.00 3.75 -89.81 -0.34 -1.34 16 11 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 12 C -0.13 -1.25 7.21 -25.92 -0.19 -1.44 16 13 C 0.06 0.69 4.14 -66.90 -0.28 0.41 16 14 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 15 N -0.66 -10.42 6.19 -107.13 -0.66 -11.08 16 16 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 17 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 18 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 19 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 20 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 C -0.12 -1.24 7.43 -25.92 -0.19 -1.43 16 29 C -0.14 -0.88 7.48 -25.77 -0.19 -1.07 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.11 1.09 7.45 -51.93 -0.39 0.70 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 2.04 8.47 -40.82 -0.35 1.69 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.81 7.85 -51.92 -0.41 0.40 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.35 5.78 8.24 -39.29 -0.32 5.45 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 414.69 15.07 6.25 6.25 Total: -1.00 -34.77 414.69 -8.97 -43.74 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.44 Total: 12.64 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.22 Total: 3.73 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.33 Total: -55.41 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.20 Total: -27.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.77 -8.97 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656140061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.255 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds