Wall clock time and date at job start Tue Mar 31 2020 23:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99571 * 2 1 4 4 C 1.53006 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.50702 * 115.55043 * 294.87671 * 4 3 2 6 6 O 1.21281 * 120.00014 * 124.26227 * 5 4 3 7 7 N 1.34778 * 119.99871 * 304.25991 * 5 4 3 8 8 C 1.46499 * 119.99652 * 175.01499 * 7 5 4 9 9 C 1.52997 * 109.47203 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.35189 * 307.14271 * 9 8 7 11 11 C 1.54597 * 110.30881 * 69.27891 * 9 8 7 12 12 C 1.54944 * 102.92243 * 140.87737 * 11 9 8 13 13 N 1.48534 * 103.22166 * 322.58789 * 12 11 9 14 14 C 1.46908 * 110.99959 * 159.72007 * 13 12 11 15 15 C 1.50703 * 109.46830 * 52.59850 * 14 13 12 16 16 O 1.21291 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99765 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00107 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00039 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00346 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99562 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46786 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.46893 * 299.99720 * 22 20 18 25 25 H 1.48497 * 109.47529 * 59.99608 * 22 20 18 26 26 C 1.47899 * 105.82282 * 39.20683 * 13 12 11 27 27 C 1.52996 * 117.49703 * 80.54736 * 4 3 2 28 28 C 1.52998 * 117.49879 * 149.20578 * 4 3 2 29 29 H 1.08998 * 109.47093 * 299.99602 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.99759 * 1 2 3 31 31 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47154 * 60.00955 * 3 2 1 33 33 H 1.08997 * 109.48000 * 300.00149 * 3 2 1 34 34 H 0.96991 * 120.00226 * 355.01480 * 7 5 4 35 35 H 1.08998 * 109.47429 * 59.99622 * 8 7 5 36 36 H 1.09002 * 109.46926 * 299.99984 * 8 7 5 37 37 H 1.09001 * 110.72770 * 259.23030 * 11 9 8 38 38 H 1.09001 * 110.72628 * 22.51892 * 11 9 8 39 39 H 1.08992 * 110.66817 * 204.15038 * 12 11 9 40 40 H 1.09002 * 110.66847 * 81.02089 * 12 11 9 41 41 H 1.09001 * 109.47184 * 292.60500 * 14 13 12 42 42 H 1.08996 * 109.47382 * 172.59904 * 14 13 12 43 43 H 0.97003 * 120.00304 * 0.02562 * 17 15 14 44 44 H 0.97006 * 119.99342 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.91712 * 94.02185 * 26 13 12 46 46 H 1.08999 * 109.91496 * 215.31234 * 26 13 12 47 47 H 1.09004 * 117.49811 * 215.00549 * 27 4 3 48 48 H 1.09007 * 117.49827 * 0.02562 * 27 4 3 49 49 H 1.09003 * 117.49771 * 359.97438 * 28 4 3 50 50 H 1.08999 * 117.50162 * 144.97348 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1388 0.5630 1.2325 6 8 4.8594 -0.4073 1.1318 7 7 3.8775 1.0853 2.4472 8 6 4.3736 0.4181 3.6534 9 6 3.9409 1.2102 4.8888 10 1 4.2364 2.2549 4.7920 11 6 2.4116 1.1014 5.0874 12 6 2.2698 0.9796 6.6256 13 7 3.4340 0.1406 7.0087 14 6 3.7527 0.3015 8.4337 15 6 2.5122 0.0634 9.2558 16 8 1.4659 -0.2136 8.7085 17 7 2.5659 0.1572 10.5992 18 6 1.4376 -0.0599 11.3471 19 1 0.5059 -0.3066 10.8598 20 6 1.4927 0.0373 12.7322 21 7 2.6266 0.3369 13.3251 22 14 -0.0444 -0.2592 13.7512 23 1 0.2775 -0.0957 15.1916 24 1 -1.0914 0.7203 13.3642 25 1 -0.5416 -1.6372 13.5078 26 6 4.5562 0.5962 6.1599 27 6 4.2215 0.9070 -1.3397 28 6 4.3314 2.2912 -0.6956 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.3611 1.9028 2.5227 35 1 5.4617 0.3652 3.6180 36 1 3.9624 -0.5900 3.7062 37 1 1.9106 1.9986 4.7239 38 1 2.0206 0.2125 4.5924 39 1 1.3352 0.4837 6.8876 40 1 2.3310 1.9607 7.0965 41 1 4.1183 1.3127 8.6124 42 1 4.5205 -0.4180 8.7179 43 1 3.4028 0.3783 11.0369 44 1 2.6649 0.4052 14.2920 45 1 5.1411 1.3481 6.6898 46 1 5.1887 -0.2508 5.8945 47 1 5.1092 0.2745 -1.3287 48 1 3.5862 0.8108 -2.2203 49 1 3.7685 3.1050 -1.1527 50 1 5.2913 2.5698 -0.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663603772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:49 Heat of formation + Delta-G solvation = -82.475510 kcal Electronic energy + Delta-G solvation = -29395.223331 eV Core-core repulsion = 25230.570234 eV Total energy + Delta-G solvation = -4164.653098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.51009 -39.35196 -38.22928 -37.63189 -36.52940 -35.03817 -33.91690 -32.00681 -31.21870 -29.40857 -28.66868 -27.24690 -26.12544 -25.26772 -24.05068 -23.00469 -22.73595 -21.16779 -20.50802 -19.51557 -19.22086 -17.88153 -17.64897 -16.75785 -16.55698 -16.14498 -15.80858 -15.78657 -15.55447 -15.11390 -14.82768 -14.58553 -14.47274 -14.19691 -13.93433 -13.73875 -13.42548 -13.21960 -12.90893 -12.58812 -12.51738 -12.25040 -12.05798 -11.99879 -11.78751 -11.66870 -11.54751 -11.26431 -11.14384 -11.06035 -10.93860 -10.78936 -10.63592 -10.56173 -10.40751 -10.22977 -10.12786 -9.88234 -9.49255 -9.21192 -8.36572 -8.02020 -7.89591 -6.43284 -3.84175 2.34594 2.87827 3.00098 3.18756 3.24755 3.28997 3.63243 3.88168 4.08122 4.19786 4.29727 4.32205 4.44188 4.54033 4.57108 4.66693 4.81423 4.84375 4.96494 5.03213 5.08971 5.11100 5.13123 5.23474 5.30048 5.33023 5.37709 5.43826 5.48618 5.51709 5.63515 5.69400 5.71301 5.80142 5.88786 5.91316 6.00169 6.09059 6.24789 6.26948 6.35061 6.68711 6.73575 7.24684 7.30479 7.31531 7.53581 8.04226 8.05243 8.59981 9.16174 9.52117 10.03898 10.74278 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.001872 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.663905 B =14954.659921 C =15822.233301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.104 3.896 4 C -0.166 4.166 5 C 0.557 3.443 6 O -0.533 6.533 7 N -0.723 5.723 8 C 0.131 3.869 9 C -0.110 4.110 10 H 0.078 0.922 11 C -0.122 4.122 12 C 0.039 3.961 13 N -0.495 5.495 14 C 0.036 3.964 15 C 0.442 3.558 16 O -0.581 6.581 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.284 1.284 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.041 3.959 27 C -0.134 4.134 28 C -0.149 4.149 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 7.937 -26.248 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.027 3.973 4 C -0.169 4.169 5 C 0.342 3.658 6 O -0.409 6.409 7 N -0.374 5.374 8 C 0.008 3.992 9 C -0.130 4.130 10 H 0.096 0.904 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.219 5.219 14 C -0.095 4.095 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.198 5.198 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.210 1.210 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.088 4.088 27 C -0.171 4.171 28 C -0.186 4.186 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.823 6.316 -26.502 27.390 hybrid contribution -0.437 1.544 1.260 2.040 sum 2.386 7.860 -25.242 26.545 Atomic orbital electron populations 1.22785 0.80545 1.03240 1.00009 1.87984 1.19873 1.26899 1.95354 1.21873 0.89083 0.85501 1.00825 1.21387 0.94000 1.07063 0.94484 1.19240 0.80002 0.83195 0.83349 1.90703 1.37246 1.26569 1.86418 1.45888 1.56812 1.29011 1.05715 1.21492 0.99101 0.96596 0.82021 1.22250 0.97178 0.99390 0.94138 0.90350 1.22689 0.93850 1.01809 0.97686 1.23470 0.97561 0.95436 0.92388 1.64615 1.03436 1.51587 1.02299 1.22102 0.98108 1.00451 0.88876 1.19714 0.89675 0.84818 0.83054 1.90433 1.31840 1.53576 1.70740 1.41847 1.12391 1.61160 1.04367 1.19650 0.90381 1.44643 0.88258 0.87943 1.25275 0.98370 0.97252 0.97060 1.69609 1.25352 1.48407 1.10864 0.85907 0.80993 0.79141 0.78112 1.20978 1.19943 1.19854 1.22890 0.94363 0.98863 0.92636 1.22985 1.02691 0.97893 0.93568 1.23107 1.01048 0.92424 1.02038 0.93729 0.94080 0.89299 0.92487 0.92268 0.76740 0.91442 0.90673 0.91636 0.90553 0.86409 0.94719 0.93390 0.89190 0.77440 0.91799 0.93574 0.90115 0.87343 0.87727 0.87576 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.92 10.63 -35.23 -0.37 -4.30 16 3 C 0.10 0.78 5.74 37.16 0.21 0.99 16 4 C -0.17 -1.42 2.18 -155.66 -0.34 -1.76 16 5 C 0.56 6.52 7.09 -10.98 -0.08 6.44 16 6 O -0.53 -8.48 16.49 5.56 0.09 -8.39 16 7 N -0.72 -6.98 5.40 -60.30 -0.33 -7.31 16 8 C 0.13 1.43 4.77 -4.04 -0.02 1.41 16 9 C -0.11 -1.16 3.03 -89.27 -0.27 -1.43 16 10 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.12 -1.47 6.41 -24.87 -0.16 -1.63 16 12 C 0.04 0.63 5.30 -1.89 -0.01 0.62 16 13 N -0.50 -8.31 5.26 -231.89 -1.22 -9.53 16 14 C 0.04 0.66 5.52 -4.97 -0.03 0.63 16 15 C 0.44 10.36 7.49 -10.99 -0.08 10.28 16 16 O -0.58 -15.30 13.10 5.55 0.07 -15.23 16 17 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.04 0.52 6.36 -2.76 -0.02 0.51 16 27 C -0.13 -1.03 9.76 -26.70 -0.26 -1.29 16 28 C -0.15 -0.86 9.93 -26.70 -0.26 -1.12 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.35 7.91 -51.92 -0.41 -0.06 16 33 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.40 2.86 8.18 -40.82 -0.33 2.53 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.98 7.99 -51.93 -0.42 0.57 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 39 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 40 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 41 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 46 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 47 H 0.11 0.99 7.83 -51.93 -0.41 0.58 16 48 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 49 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -34.13 409.44 -8.76 -42.89 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.37 Total: 10.68 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.44 Total: 7.02 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.88 Total: -54.79 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.21 Total: -27.92 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.13 -8.76 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.582 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds