Wall clock time and date at job start Tue Mar 31 2020 23:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99571 * 2 1 4 4 C 1.53006 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.50702 * 115.55043 * 294.87671 * 4 3 2 6 6 O 1.21281 * 120.00014 * 124.26227 * 5 4 3 7 7 N 1.34778 * 119.99871 * 304.25991 * 5 4 3 8 8 C 1.46499 * 119.99652 * 175.01499 * 7 5 4 9 9 C 1.52997 * 109.47203 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.35189 * 307.14271 * 9 8 7 11 11 C 1.54597 * 110.30881 * 69.27891 * 9 8 7 12 12 C 1.54944 * 102.92243 * 140.87737 * 11 9 8 13 13 N 1.48534 * 103.22166 * 322.58789 * 12 11 9 14 14 C 1.46908 * 110.99959 * 159.72007 * 13 12 11 15 15 C 1.50703 * 109.46830 * 52.59850 * 14 13 12 16 16 O 1.21291 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99765 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00107 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00039 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00346 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99562 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46786 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.46893 * 299.99720 * 22 20 18 25 25 H 1.48497 * 109.47529 * 59.99608 * 22 20 18 26 26 C 1.47899 * 105.82282 * 39.20683 * 13 12 11 27 27 C 1.52996 * 117.49703 * 80.54736 * 4 3 2 28 28 C 1.52998 * 117.49879 * 149.20578 * 4 3 2 29 29 H 1.08998 * 109.47093 * 299.99602 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.99759 * 1 2 3 31 31 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47154 * 60.00955 * 3 2 1 33 33 H 1.08997 * 109.48000 * 300.00149 * 3 2 1 34 34 H 0.96991 * 120.00226 * 355.01480 * 7 5 4 35 35 H 1.08998 * 109.47429 * 59.99622 * 8 7 5 36 36 H 1.09002 * 109.46926 * 299.99984 * 8 7 5 37 37 H 1.09001 * 110.72770 * 259.23030 * 11 9 8 38 38 H 1.09001 * 110.72628 * 22.51892 * 11 9 8 39 39 H 1.08992 * 110.66817 * 204.15038 * 12 11 9 40 40 H 1.09002 * 110.66847 * 81.02089 * 12 11 9 41 41 H 1.09001 * 109.47184 * 292.60500 * 14 13 12 42 42 H 1.08996 * 109.47382 * 172.59904 * 14 13 12 43 43 H 0.97003 * 120.00304 * 0.02562 * 17 15 14 44 44 H 0.97006 * 119.99342 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.91712 * 94.02185 * 26 13 12 46 46 H 1.08999 * 109.91496 * 215.31234 * 26 13 12 47 47 H 1.09004 * 117.49811 * 215.00549 * 27 4 3 48 48 H 1.09007 * 117.49827 * 0.02562 * 27 4 3 49 49 H 1.09003 * 117.49771 * 359.97438 * 28 4 3 50 50 H 1.08999 * 117.50162 * 144.97348 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1388 0.5630 1.2325 6 8 4.8594 -0.4073 1.1318 7 7 3.8775 1.0853 2.4472 8 6 4.3736 0.4181 3.6534 9 6 3.9409 1.2102 4.8888 10 1 4.2364 2.2549 4.7920 11 6 2.4116 1.1014 5.0874 12 6 2.2698 0.9796 6.6256 13 7 3.4340 0.1406 7.0087 14 6 3.7527 0.3015 8.4337 15 6 2.5122 0.0634 9.2558 16 8 1.4659 -0.2136 8.7085 17 7 2.5659 0.1572 10.5992 18 6 1.4376 -0.0599 11.3471 19 1 0.5059 -0.3066 10.8598 20 6 1.4927 0.0373 12.7322 21 7 2.6266 0.3369 13.3251 22 14 -0.0444 -0.2592 13.7512 23 1 0.2775 -0.0957 15.1916 24 1 -1.0914 0.7203 13.3642 25 1 -0.5416 -1.6372 13.5078 26 6 4.5562 0.5962 6.1599 27 6 4.2215 0.9070 -1.3397 28 6 4.3314 2.2912 -0.6956 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.3611 1.9028 2.5227 35 1 5.4617 0.3652 3.6180 36 1 3.9624 -0.5900 3.7062 37 1 1.9106 1.9986 4.7239 38 1 2.0206 0.2125 4.5924 39 1 1.3352 0.4837 6.8876 40 1 2.3310 1.9607 7.0965 41 1 4.1183 1.3127 8.6124 42 1 4.5205 -0.4180 8.7179 43 1 3.4028 0.3783 11.0369 44 1 2.6649 0.4052 14.2920 45 1 5.1411 1.3481 6.6898 46 1 5.1887 -0.2508 5.8945 47 1 5.1092 0.2745 -1.3287 48 1 3.5862 0.8108 -2.2203 49 1 3.7685 3.1050 -1.1527 50 1 5.2913 2.5698 -0.2606 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:48 Heat of formation + Delta-G solvation = -109.650308 kcal Electronic energy + Delta-G solvation = -29396.401719 eV Core-core repulsion = 25230.570234 eV Total energy + Delta-G solvation = -4165.831485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.34053 -40.72222 -39.35309 -38.78047 -37.19886 -36.23594 -35.76165 -33.43355 -32.98522 -30.48654 -29.27350 -28.62918 -27.00601 -26.38727 -25.53951 -23.72646 -23.33071 -22.45170 -21.45010 -21.05383 -20.33257 -19.87301 -18.33466 -17.89467 -17.39747 -17.20477 -16.86283 -16.68176 -16.54075 -16.42636 -16.19709 -15.76500 -15.72776 -15.53771 -15.20689 -14.78571 -14.65591 -14.27078 -14.13135 -13.57643 -13.49110 -13.39049 -13.25038 -13.18480 -12.92711 -12.85467 -12.52913 -12.43946 -12.37377 -12.32620 -12.17026 -12.13661 -11.86498 -11.63171 -11.59496 -11.44779 -11.26086 -10.87945 -10.57126 -10.18976 -10.09117 -10.00929 -9.28744 -8.47345 -5.96029 1.38896 1.41005 1.51937 1.52310 2.03135 2.11269 2.28276 2.41812 2.88801 3.09774 3.19536 3.34163 3.55108 3.63869 3.70629 3.75960 3.87148 3.89182 4.05989 4.28025 4.32660 4.36992 4.39800 4.41360 4.48340 4.49698 4.53838 4.60128 4.62391 4.68575 4.71630 4.72614 4.85901 4.87481 4.88978 4.93225 4.97112 5.09346 5.18824 5.26213 5.31379 5.40845 5.43229 5.88009 5.99985 6.14003 6.21417 6.53313 6.59797 7.11899 7.22868 7.54474 8.10457 8.69793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.001872 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.663905 B =14954.659921 C =15822.233301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.102 3.898 4 C -0.182 4.182 5 C 0.550 3.450 6 O -0.586 6.586 7 N -0.710 5.710 8 C 0.138 3.862 9 C -0.093 4.093 10 H 0.110 0.890 11 C -0.110 4.110 12 C 0.038 3.962 13 N -0.519 5.519 14 C 0.048 3.952 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.039 3.961 27 C -0.148 4.148 28 C -0.117 4.117 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.139 0.861 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 10.324 -27.331 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.025 3.975 4 C -0.185 4.185 5 C 0.337 3.663 6 O -0.466 6.466 7 N -0.361 5.361 8 C 0.014 3.986 9 C -0.112 4.112 10 H 0.128 0.872 11 C -0.148 4.148 12 C -0.089 4.089 13 N -0.244 5.244 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.500 6.500 17 N -0.209 5.209 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.089 4.089 27 C -0.186 4.186 28 C -0.154 4.154 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.251 0.749 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.137 0.863 49 H 0.157 0.843 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.002 8.744 -27.585 29.093 hybrid contribution -0.479 0.767 1.547 1.792 sum 2.523 9.511 -26.038 27.835 Atomic orbital electron populations 1.22890 0.79353 1.03472 1.01181 1.87938 1.21401 1.28913 1.95646 1.22062 0.87945 0.84734 1.02710 1.21433 0.94955 1.09076 0.93058 1.19885 0.79203 0.82542 0.84653 1.90675 1.39753 1.28956 1.87253 1.45766 1.56262 1.29186 1.04886 1.21307 0.98989 0.95523 0.82755 1.22150 0.95549 1.00757 0.92746 0.87234 1.22592 0.95365 1.02632 0.94200 1.23283 0.95734 0.94441 0.95472 1.64566 1.05121 1.52774 1.01908 1.21988 0.95216 1.02156 0.88973 1.20733 0.91079 0.82847 0.82782 1.90437 1.33849 1.54432 1.71329 1.41922 1.11944 1.61993 1.05082 1.19620 0.90626 1.46723 0.89261 0.90261 1.26058 1.01395 0.96433 0.97492 1.69672 1.26715 1.48315 1.11382 0.84979 0.77463 0.78842 0.76997 1.19498 1.19578 1.19846 1.22981 0.93244 0.99770 0.92882 1.23024 1.02193 0.99496 0.93873 1.23244 1.00686 0.91921 0.99513 0.93253 0.92117 0.89713 0.91185 0.89627 0.74929 0.91361 0.93410 0.88649 0.91941 0.90819 0.94960 0.91072 0.87608 0.77034 0.91295 0.91679 0.89732 0.89664 0.86299 0.84330 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.21 10.63 -148.98 -1.58 -9.79 16 3 C 0.10 1.27 5.74 71.98 0.41 1.69 16 4 C -0.18 -2.80 2.18 -52.93 -0.12 -2.92 16 5 C 0.55 12.57 7.09 87.66 0.62 13.19 16 6 O -0.59 -19.21 16.49 -3.03 -0.05 -19.26 16 7 N -0.71 -12.53 5.40 -463.06 -2.50 -15.03 16 8 C 0.14 2.84 4.77 86.38 0.41 3.25 16 9 C -0.09 -1.72 3.03 -9.92 -0.03 -1.75 16 10 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 11 C -0.11 -2.47 6.41 31.80 0.20 -2.27 16 12 C 0.04 1.25 5.30 86.65 0.46 1.71 16 13 N -0.52 -17.08 5.26 -887.57 -4.67 -21.75 16 14 C 0.05 1.70 5.52 85.56 0.47 2.17 16 15 C 0.44 20.99 7.49 87.66 0.66 21.64 16 16 O -0.61 -33.63 13.10 -3.06 -0.04 -33.67 16 17 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 18 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 22 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.04 0.91 6.36 86.44 0.55 1.46 16 27 C -0.15 -2.12 9.76 30.62 0.30 -1.83 16 28 C -0.12 -1.00 9.93 30.62 0.30 -0.69 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.66 7.91 -2.38 -0.02 0.64 16 33 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 34 H 0.41 4.70 8.18 -92.72 -0.76 3.94 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.26 7.99 -2.39 -0.02 1.25 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.60 7.76 -2.39 -0.02 1.58 16 39 H 0.07 3.08 5.97 -2.39 -0.01 3.07 16 40 H 0.03 1.05 8.02 -2.39 -0.02 1.03 16 41 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 44 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 45 H 0.06 1.30 7.57 -2.39 -0.02 1.29 16 46 H 0.08 1.91 7.68 -2.39 -0.02 1.89 16 47 H 0.08 1.61 7.83 -2.38 -0.02 1.59 16 48 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -78.22 409.44 -1.92 -80.14 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.54 Total: 36.13 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.77 Total: 18.85 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -8.51 Total: -117.41 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -1.67 Total: -62.73 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.22 -1.92 -80.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds