Wall clock time and date at job start Tue Mar 31 2020 23:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99855 * 2 1 4 4 C 1.53000 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.50703 * 115.54845 * 294.84721 * 4 3 2 6 6 O 1.21284 * 119.99727 * 99.25383 * 5 4 3 7 7 N 1.34771 * 120.00461 * 279.24625 * 5 4 3 8 8 C 1.46499 * 120.00369 * 174.98839 * 7 5 4 9 9 C 1.52999 * 109.47277 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.78451 * 51.75677 * 9 8 7 11 11 C 1.54590 * 110.72570 * 288.50428 * 9 8 7 12 12 C 1.54001 * 105.13983 * 219.68264 * 11 9 8 13 13 N 1.48063 * 107.13851 * 358.91775 * 12 11 9 14 14 C 1.46904 * 111.15714 * 145.63213 * 13 12 11 15 15 C 1.50697 * 109.47428 * 52.60368 * 14 13 12 16 16 O 1.21297 * 119.99788 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00220 * 179.97438 * 15 14 13 18 18 C 1.37105 * 120.00327 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99384 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00230 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00191 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47259 * 59.99975 * 22 20 18 24 24 H 1.48491 * 109.47379 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46730 * 300.00272 * 22 20 18 26 26 C 1.48530 * 105.74096 * 25.07924 * 13 12 11 27 27 C 1.52998 * 117.52046 * 80.55328 * 4 3 2 28 28 C 1.53001 * 117.49676 * 149.18588 * 4 3 2 29 29 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47032 * 300.00413 * 1 2 3 31 31 H 1.09000 * 109.46942 * 59.99962 * 1 2 3 32 32 H 1.08995 * 109.47178 * 60.00158 * 3 2 1 33 33 H 1.08994 * 109.47038 * 299.99766 * 3 2 1 34 34 H 0.97003 * 120.00095 * 354.99270 * 7 5 4 35 35 H 1.09000 * 109.46739 * 60.00272 * 8 7 5 36 36 H 1.08994 * 109.47323 * 300.00379 * 8 7 5 37 37 H 1.08998 * 110.31240 * 338.60077 * 11 9 8 38 38 H 1.08999 * 110.31040 * 100.66929 * 11 9 8 39 39 H 1.08997 * 109.91226 * 118.12684 * 12 11 9 40 40 H 1.08995 * 109.91941 * 239.22558 * 12 11 9 41 41 H 1.09006 * 109.46554 * 172.60195 * 14 13 12 42 42 H 1.08997 * 109.47067 * 292.60016 * 14 13 12 43 43 H 0.97003 * 119.99897 * 0.02562 * 17 15 14 44 44 H 0.96995 * 119.99966 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.66776 * 202.50272 * 26 13 12 46 46 H 1.08999 * 110.66706 * 79.53905 * 26 13 12 47 47 H 1.08999 * 117.50055 * 214.97029 * 27 4 3 48 48 H 1.08998 * 117.49965 * 359.97438 * 27 4 3 49 49 H 1.09003 * 117.49749 * 359.96829 * 28 4 3 50 50 H 1.09001 * 117.49840 * 144.99596 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1377 0.5640 1.2348 6 8 4.4602 -0.6052 1.2299 7 7 4.3181 1.3080 2.3439 8 6 4.8004 0.6804 3.5767 9 6 4.9164 1.7382 4.6760 10 1 3.9871 2.2998 4.7720 11 6 6.1036 2.6884 4.3978 12 6 6.7473 2.9415 5.7738 13 7 5.9481 2.1963 6.7729 14 6 6.7984 1.6808 7.8543 15 6 7.6201 2.8066 8.4273 16 8 7.5087 3.9280 7.9787 17 7 8.4787 2.5674 9.4383 18 6 9.2267 3.5915 9.9593 19 1 9.1275 4.5901 9.5598 20 6 10.1122 3.3448 11.0012 21 7 10.2332 2.1297 11.4869 22 14 11.1308 4.7403 11.7115 23 1 10.2271 5.7887 12.2495 24 1 11.9898 4.2193 12.8050 25 1 11.9847 5.3224 10.6450 26 6 5.3042 1.0853 6.0265 27 6 4.2231 0.9065 -1.3375 28 6 4.3320 2.2906 -0.6944 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 4.1284 2.2592 2.3261 35 1 5.7781 0.2329 3.3980 36 1 4.0987 -0.0927 3.8895 37 1 6.8194 2.2134 3.7269 38 1 5.7465 3.6242 3.9677 39 1 7.7741 2.5757 5.7762 40 1 6.7324 4.0075 6.0003 41 1 6.1715 1.2535 8.6370 42 1 7.4617 0.9113 7.4595 43 1 8.5680 1.6705 9.7968 44 1 10.8517 1.9574 12.2139 45 1 4.4170 0.7321 6.5520 46 1 6.0082 0.2679 5.8705 47 1 5.1112 0.2746 -1.3252 48 1 3.5890 0.8092 -2.2186 49 1 3.7694 3.1041 -1.1526 50 1 5.2917 2.5692 -0.2592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663603773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:52 Heat of formation + Delta-G solvation = -111.461060 kcal Electronic energy + Delta-G solvation = -29125.925149 eV Core-core repulsion = 24960.015144 eV Total energy + Delta-G solvation = -4165.910005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31789 -40.71552 -39.34367 -38.77496 -37.22877 -36.25324 -35.76288 -33.42371 -32.97618 -30.44723 -29.29199 -28.70302 -26.99457 -26.44774 -25.53952 -23.73688 -23.28946 -22.38501 -21.62964 -20.89575 -20.40718 -19.80851 -18.29622 -17.69069 -17.50379 -17.15681 -16.97995 -16.78010 -16.61409 -16.48224 -16.20090 -15.88867 -15.62577 -15.43472 -15.16194 -14.84692 -14.61298 -14.35087 -14.10160 -13.57518 -13.46400 -13.35310 -13.26272 -13.19973 -13.03713 -12.91342 -12.51971 -12.44212 -12.40944 -12.34141 -12.15413 -12.09890 -11.89023 -11.65028 -11.53716 -11.47326 -11.26960 -10.84447 -10.56714 -10.24818 -10.11412 -10.02238 -9.33638 -8.47473 -5.96539 1.38926 1.40894 1.51996 1.56292 2.02804 2.05681 2.28148 2.38704 2.85605 3.07819 3.19186 3.28376 3.57374 3.65468 3.70285 3.79445 3.85512 3.92628 4.03778 4.24916 4.30373 4.36348 4.37078 4.42715 4.48510 4.52073 4.52917 4.54161 4.62640 4.68357 4.70883 4.72183 4.79753 4.84871 4.86716 4.93420 4.96404 5.13274 5.16638 5.21910 5.31291 5.39712 5.43346 5.85198 5.96509 6.09239 6.21676 6.53915 6.58811 7.11101 7.22952 7.53853 8.09157 8.69699 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.001689 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.630468 B =16569.719137 C =16883.103199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.105 3.895 4 C -0.178 4.178 5 C 0.549 3.451 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.137 3.863 9 C -0.084 4.084 10 H 0.105 0.895 11 C -0.119 4.119 12 C 0.052 3.948 13 N -0.511 5.511 14 C 0.047 3.953 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.039 3.961 27 C -0.149 4.149 28 C -0.125 4.125 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.416 0.584 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.015 0.985 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.118 0.882 49 H 0.137 0.863 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.893 -1.928 -24.387 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.028 3.972 4 C -0.181 4.181 5 C 0.336 3.664 6 O -0.460 6.460 7 N -0.363 5.363 8 C 0.013 3.987 9 C -0.104 4.104 10 H 0.123 0.877 11 C -0.157 4.157 12 C -0.076 4.076 13 N -0.236 5.236 14 C -0.084 4.084 15 C 0.226 3.774 16 O -0.501 6.501 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.089 4.089 27 C -0.187 4.187 28 C -0.162 4.162 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.137 0.863 49 H 0.155 0.845 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.890 -1.928 -24.230 30.181 hybrid contribution 1.272 -0.107 0.757 1.484 sum -16.618 -2.035 -23.473 28.832 Atomic orbital electron populations 1.22908 0.79348 1.03571 1.01155 1.87968 1.21445 1.28781 1.95635 1.22007 0.87809 0.84751 1.02595 1.21379 0.95092 1.08632 0.93006 1.19892 0.76754 0.85551 0.84194 1.90682 1.52023 1.18929 1.84392 1.45837 1.67204 1.13067 1.10161 1.21228 0.99448 0.95105 0.82960 1.22162 0.99920 0.95621 0.92654 0.87677 1.22545 0.97062 1.00648 0.95443 1.22723 0.94118 0.99820 0.90929 1.64576 1.28581 1.21161 1.09233 1.21990 0.95626 0.94245 0.96573 1.20717 0.83299 0.90702 0.82715 1.90473 1.70479 1.25812 1.63299 1.41929 1.36321 1.11441 1.31334 1.19636 1.19205 0.91395 1.16106 0.90186 1.26062 0.98575 1.00028 0.96664 1.69673 1.38012 1.21104 1.27348 0.84971 0.77846 0.77545 0.77864 1.19656 1.19519 1.19695 1.23344 0.99813 0.92383 0.93340 1.23013 1.02044 0.99505 0.94105 1.23294 1.00930 0.92017 0.99964 0.89436 0.93214 0.92252 0.91408 0.89572 0.74741 0.92550 0.91486 0.91144 0.89225 0.96666 0.91562 0.87126 0.91687 0.77076 0.91297 0.88166 0.93076 0.89821 0.86331 0.84540 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.81 10.63 -148.98 -1.58 -9.40 16 3 C 0.10 1.28 5.76 71.98 0.41 1.69 16 4 C -0.18 -2.64 2.13 -52.93 -0.11 -2.75 16 5 C 0.55 12.00 6.91 87.66 0.61 12.61 16 6 O -0.58 -18.67 17.01 -3.04 -0.05 -18.73 16 7 N -0.71 -11.69 5.47 -463.07 -2.53 -14.23 16 8 C 0.14 2.56 5.03 86.38 0.43 3.00 16 9 C -0.08 -1.56 3.08 -9.59 -0.03 -1.59 16 10 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 11 C -0.12 -2.58 6.42 31.47 0.20 -2.37 16 12 C 0.05 1.72 5.07 86.42 0.44 2.15 16 13 N -0.51 -16.44 5.26 -887.12 -4.67 -21.11 16 14 C 0.05 1.67 5.49 85.56 0.47 2.14 16 15 C 0.44 21.06 7.36 87.66 0.64 21.70 16 16 O -0.61 -33.55 13.39 -3.08 -0.04 -33.60 16 17 N -0.57 -29.76 5.29 -306.99 -1.62 -31.38 16 18 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 21 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 22 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.04 0.89 6.00 86.65 0.52 1.41 16 27 C -0.15 -2.03 9.88 30.60 0.30 -1.73 16 28 C -0.13 -1.02 9.92 30.60 0.30 -0.72 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.58 8.09 -2.39 -0.02 0.57 16 34 H 0.42 4.42 8.48 -92.71 -0.79 3.64 16 35 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.47 7.72 -2.39 -0.02 1.45 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.01 0.55 7.58 -2.39 -0.02 0.53 16 40 H 0.07 2.63 6.77 -2.39 -0.02 2.62 16 41 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 42 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 43 H 0.40 19.61 7.90 -92.71 -0.73 18.87 16 44 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 49 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.07 411.67 -2.04 -80.11 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.57 Total: 34.43 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 6.72 Total: 18.58 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -8.54 Total: -116.48 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -1.68 Total: -61.72 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -78.07 -2.04 -80.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663603773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.347 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds