Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45759 * 117.94472 * 2 1 4 4 C 1.52925 * 110.48544 * 160.92345 * 3 2 1 5 5 C 1.53344 * 108.67310 * 50.75408 * 4 3 2 6 6 H 1.08998 * 109.67751 * 52.20017 * 5 4 3 7 7 C 1.50703 * 109.67013 * 172.73250 * 5 4 3 8 8 O 1.21278 * 120.00240 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99795 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00288 * 174.89666 * 9 7 5 11 11 C 1.53007 * 109.45650 * 302.69007 * 10 9 7 12 12 O 1.42901 * 109.46670 * 300.72946 * 11 10 9 13 13 C 1.53034 * 109.46241 * 182.71687 * 10 9 7 14 14 C 1.53169 * 109.32574 * 301.35220 * 13 10 9 15 15 N 1.46921 * 108.77038 * 305.36031 * 14 13 10 16 16 C 1.36933 * 120.63024 * 233.58768 * 15 14 13 17 17 H 1.08007 * 120.00330 * 31.73309 * 16 15 14 18 18 C 1.38811 * 120.00316 * 211.73499 * 16 15 14 19 19 N 1.31624 * 119.99515 * 11.04573 * 18 16 15 20 20 Si 1.86801 * 120.00442 * 191.04929 * 18 16 15 21 21 H 1.48502 * 109.46941 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47182 * 119.99800 * 20 18 16 23 23 H 1.48501 * 109.46939 * 240.00217 * 20 18 16 24 24 C 1.46926 * 118.74208 * 53.60501 * 15 14 13 25 25 C 1.53038 * 109.46141 * 62.65465 * 10 9 7 26 26 C 1.53068 * 108.42311 * 292.46450 * 5 4 3 27 27 C 1.33347 * 117.94956 * 179.73285 * 2 1 3 28 28 O 1.21285 * 118.24483 * 2.22832 * 27 2 1 29 29 H 1.08997 * 109.47000 * 89.99998 * 1 2 3 30 30 H 1.09001 * 109.47136 * 330.00109 * 1 2 3 31 31 H 1.09005 * 109.46600 * 210.00184 * 1 2 3 32 32 H 1.08998 * 109.29746 * 281.23225 * 3 2 1 33 33 H 1.08995 * 109.29850 * 40.81757 * 3 2 1 34 34 H 1.09005 * 109.60052 * 170.50700 * 4 3 2 35 35 H 1.08994 * 109.60421 * 290.99068 * 4 3 2 36 36 H 0.97001 * 120.00691 * 354.89719 * 9 7 5 37 37 H 1.08994 * 109.47211 * 60.72367 * 11 10 9 38 38 H 1.09000 * 109.46791 * 180.73324 * 11 10 9 39 39 H 0.96703 * 114.00121 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.49907 * 61.29617 * 13 10 9 41 41 H 1.09004 * 109.49393 * 181.39053 * 13 10 9 42 42 H 1.08997 * 109.58486 * 185.56905 * 14 13 10 43 43 H 1.08997 * 109.70490 * 65.21560 * 14 13 10 44 44 H 0.97005 * 119.99416 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.58841 * 186.60739 * 24 15 14 46 46 H 1.08999 * 109.70218 * 66.24782 * 24 15 14 47 47 H 1.08996 * 109.49894 * 178.61217 * 25 10 9 48 48 H 1.08997 * 109.50186 * 298.71233 * 25 10 9 49 49 H 1.09004 * 109.39678 * 169.03109 * 26 5 4 50 50 H 1.09001 * 109.40343 * 288.85762 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4682 5 6 4.2493 -0.0012 -0.3396 6 1 4.1087 0.1814 -1.4050 7 6 5.7217 -0.0623 -0.0245 8 8 6.2050 0.7175 0.7687 9 7 6.5013 -0.9842 -0.6235 10 6 7.9497 -0.9731 -0.4038 11 6 8.5170 0.3873 -0.8144 12 8 8.2282 0.6273 -2.1932 13 6 8.6016 -2.0724 -1.2455 14 6 8.0066 -3.4290 -0.8561 15 7 8.1551 -3.6116 0.5941 16 6 8.7586 -4.7328 1.0980 17 1 9.5467 -5.2184 0.5414 18 6 8.3576 -5.2455 2.3240 19 7 7.2633 -4.7942 2.8997 20 14 9.3708 -6.5756 3.1568 21 1 10.5445 -6.9071 2.3097 22 1 9.8365 -6.0877 4.4798 23 1 8.5364 -7.7899 3.3427 24 6 7.6435 -2.5686 1.4936 25 6 8.2427 -1.2214 1.0776 26 6 3.5839 -1.3239 0.0487 27 6 2.0900 -1.1779 0.0055 28 8 1.4159 -2.1855 -0.0314 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 2.1398 1.6998 -1.0090 33 1 1.6291 1.9707 0.6724 34 1 4.1384 2.0565 0.3042 35 1 3.6101 0.8728 1.5282 36 1 6.1035 -1.6552 -1.2001 37 1 8.0620 1.1692 -0.2065 38 1 9.5965 0.3914 -0.6633 39 1 8.5595 1.4738 -2.5230 40 1 8.4124 -1.8822 -2.3020 41 1 9.6763 -2.0807 -1.0637 42 1 8.5360 -4.2243 -1.3808 43 1 6.9498 -3.4567 -1.1215 44 1 6.9832 -5.1523 3.7567 45 1 7.9334 -2.7962 2.5193 46 1 6.5568 -2.5227 1.4226 47 1 9.3207 -1.2378 1.2375 48 1 7.7979 -0.4255 1.6749 49 1 3.8944 -2.1034 -0.6472 50 1 3.8869 -1.5988 1.0590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674315367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -95.999048 kcal Electronic energy + Delta-G solvation = -32127.113212 eV Core-core repulsion = 27961.873690 eV Total energy + Delta-G solvation = -4165.239522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.89343 -39.91983 -37.78475 -36.29624 -36.13358 -34.18479 -34.03503 -31.90114 -30.55401 -29.89547 -29.54254 -27.46701 -26.70742 -24.78593 -23.91514 -23.24552 -22.27196 -21.03454 -20.17309 -18.79827 -18.69172 -17.41599 -17.19907 -16.67215 -16.52744 -16.37065 -15.80057 -15.13467 -14.98706 -14.84152 -14.39288 -14.33900 -14.05241 -13.60778 -13.52130 -13.37872 -13.33717 -13.10427 -12.83099 -12.64272 -12.50623 -12.36517 -11.91780 -11.87282 -11.72289 -11.39432 -11.27906 -11.10732 -11.06977 -10.88781 -10.74151 -10.37923 -10.26867 -10.16681 -10.03129 -9.84565 -9.64350 -9.55887 -9.00109 -8.90278 -8.57646 -8.47086 -6.60234 -5.77341 -3.25729 2.59161 2.83503 2.90963 3.37444 3.40925 3.45250 3.46957 4.38808 4.41379 4.45518 4.49576 4.57596 4.65030 5.00562 5.07785 5.11812 5.18347 5.25012 5.29903 5.36457 5.42816 5.47733 5.53032 5.61746 5.65072 5.65299 5.72514 5.76008 5.86150 5.90479 6.03905 6.09008 6.21169 6.24758 6.33412 6.50889 6.63781 6.68843 6.77079 6.90745 7.03690 7.29248 7.38896 7.70850 7.72931 7.80619 7.89126 8.08117 8.48734 8.52967 9.23485 9.84646 10.42865 11.30456 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.003996 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.674969 B = 7005.527338 C = 8769.715587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.115 3.885 4 C -0.115 4.115 5 C -0.110 4.110 6 H 0.101 0.899 7 C 0.526 3.474 8 O -0.543 6.543 9 N -0.698 5.698 10 C 0.194 3.806 11 C 0.062 3.938 12 O -0.569 6.569 13 C -0.133 4.133 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.182 3.818 25 C -0.152 4.152 26 C -0.126 4.126 27 C 0.522 3.478 28 O -0.549 6.549 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.370 0.630 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.253 0.747 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.107 0.893 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 16.167 -8.920 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.008 4.008 4 C -0.153 4.153 5 C -0.132 4.132 6 H 0.119 0.881 7 C 0.312 3.688 8 O -0.421 6.421 9 N -0.348 5.348 10 C 0.108 3.892 11 C -0.016 4.016 12 O -0.373 6.373 13 C -0.173 4.173 14 C 0.018 3.982 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.056 3.944 25 C -0.192 4.192 26 C -0.166 4.166 27 C 0.310 3.690 28 O -0.426 6.426 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.215 0.785 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.036 0.964 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.126 0.874 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.439 15.520 -8.170 19.052 hybrid contribution 0.613 -0.379 0.179 0.743 sum -6.826 15.142 -7.991 18.431 Atomic orbital electron populations 1.21694 0.79652 1.03197 1.01936 1.47277 1.07422 1.06204 1.73615 1.21489 0.93262 0.84412 1.01666 1.21714 0.93269 0.99417 1.00900 1.21447 0.93022 0.96376 1.02325 0.88083 1.20125 0.87703 0.80681 0.80306 1.90611 1.75140 1.42043 1.34289 1.45919 1.07455 1.32148 1.49232 1.20309 0.79127 0.92984 0.96783 1.22763 0.98425 0.98435 0.82014 1.86473 1.82344 1.42159 1.26342 1.22236 1.00614 0.96162 0.98266 1.20894 0.96532 0.93574 0.87219 1.44030 1.68882 1.19478 0.98978 1.19197 1.12332 1.03431 1.03511 0.91853 1.25163 0.96043 0.98179 0.99874 1.69989 1.22250 1.44629 1.17702 0.86224 0.79599 0.81579 0.79356 1.20268 1.21610 1.21658 1.20643 0.94692 0.83028 0.95995 1.22609 1.01405 1.01969 0.93254 1.21668 0.90658 0.97826 1.06413 1.20059 0.90703 0.82637 0.75582 1.90735 1.66212 1.35749 1.49939 0.92726 0.91364 0.90270 0.91532 0.90320 0.88728 0.90039 0.76586 0.91711 0.93557 0.78491 0.91729 0.91068 0.92566 0.96809 0.93659 0.89653 0.96402 0.92160 0.90875 0.87437 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.23 59.85 0.61 1.32 16 2 N -0.61 -6.56 3.21 -182.86 -0.59 -7.15 16 3 C 0.11 0.90 6.39 -4.48 -0.03 0.87 16 4 C -0.11 -1.12 4.70 -26.59 -0.13 -1.25 16 5 C -0.11 -1.25 2.61 -91.56 -0.24 -1.48 16 6 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 7 C 0.53 7.69 6.53 -10.99 -0.07 7.61 16 8 O -0.54 -9.22 12.16 5.56 0.07 -9.15 16 9 N -0.70 -10.54 3.91 -47.57 -0.19 -10.72 16 10 C 0.19 3.18 0.44 -131.78 -0.06 3.12 16 11 C 0.06 0.89 5.68 37.16 0.21 1.10 16 12 O -0.57 -7.25 12.84 -35.23 -0.45 -7.70 16 13 C -0.13 -2.23 4.84 -26.63 -0.13 -2.36 16 14 C 0.14 2.88 6.24 -3.73 -0.02 2.85 16 15 N -0.59 -14.32 2.98 -172.34 -0.51 -14.84 16 16 C -0.25 -6.89 9.57 -15.06 -0.14 -7.03 16 17 H 0.06 1.69 7.85 -52.48 -0.41 1.28 16 18 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 19 N -0.90 -26.10 11.10 55.49 0.62 -25.49 16 20 Si 0.90 21.70 29.57 -169.99 -5.03 16.68 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 C 0.18 4.28 4.99 -3.71 -0.02 4.27 16 25 C -0.15 -2.96 4.71 -26.61 -0.13 -3.08 16 26 C -0.13 -1.65 5.18 -28.11 -0.15 -1.79 16 27 C 0.52 7.30 7.47 -11.88 -0.09 7.22 16 28 O -0.55 -9.85 16.21 5.55 0.09 -9.76 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.43 7.86 -51.93 -0.41 0.02 16 31 H 0.08 0.86 7.20 -51.93 -0.37 0.49 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.48 7.92 -51.93 -0.41 0.06 16 34 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 35 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.40 5.72 6.81 -40.82 -0.28 5.44 16 37 H 0.06 0.99 6.17 -51.93 -0.32 0.67 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.37 3.07 9.12 45.56 0.42 3.49 16 40 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.01 0.27 6.90 -51.93 -0.36 -0.08 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 46 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.07 1.45 6.23 -51.93 -0.32 1.13 16 49 H 0.11 1.41 7.87 -51.93 -0.41 1.00 16 50 H 0.11 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -34.06 382.60 -8.02 -42.08 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.33 Total: 8.83 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -0.46 Total: 11.45 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.67 Total: -58.19 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.29 Total: -26.61 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.06 -8.02 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674315367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.918 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds