Wall clock time and date at job start Tue Mar 31 2020 22:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 119.99702 * 2 1 4 4 O 1.21278 * 119.99848 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.99998 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47076 * 179.97438 * 5 3 2 7 7 H 1.08996 * 110.45687 * 307.60195 * 6 5 3 8 8 C 1.54517 * 110.51084 * 185.00159 * 6 5 3 9 9 C 1.54479 * 104.06037 * 241.21567 * 8 6 5 10 10 O 1.44433 * 104.80518 * 336.02227 * 9 8 6 11 11 C 1.44422 * 105.27452 * 40.51075 * 10 9 8 12 12 C 1.46502 * 120.00232 * 180.02562 * 2 1 3 13 13 C 1.53772 * 113.61395 * 39.13395 * 12 2 1 14 14 C 1.53958 * 87.01930 * 220.04822 * 13 12 2 15 15 N 1.46899 * 113.66243 * 139.93387 * 14 13 12 16 16 C 1.46901 * 111.00025 * 107.44507 * 15 14 13 17 17 C 1.50703 * 109.47419 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99777 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00101 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99802 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99387 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99688 * 179.97438 * 20 19 17 23 23 N 1.31400 * 120.00112 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99474 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 60.00376 * 24 22 20 26 26 H 1.48497 * 109.46763 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47163 * 299.99735 * 24 22 20 28 28 C 1.53777 * 87.10999 * 25.36300 * 14 13 12 29 29 H 1.08993 * 109.47188 * 89.99907 * 1 2 3 30 30 H 1.09002 * 109.46604 * 209.99346 * 1 2 3 31 31 H 1.08999 * 109.46961 * 329.99218 * 1 2 3 32 32 H 1.08997 * 109.47276 * 60.00073 * 5 3 2 33 33 H 1.09003 * 109.47409 * 300.00012 * 5 3 2 34 34 H 1.08991 * 110.51174 * 359.85967 * 8 6 5 35 35 H 1.08995 * 110.51247 * 122.57446 * 8 6 5 36 36 H 1.08997 * 110.37024 * 94.85221 * 9 8 6 37 37 H 1.08995 * 110.37315 * 217.18852 * 9 8 6 38 38 H 1.08995 * 110.37333 * 200.65712 * 11 10 9 39 39 H 1.09001 * 110.37394 * 78.31441 * 11 10 9 40 40 H 1.09000 * 112.84595 * 170.33534 * 12 2 1 41 41 H 1.08999 * 113.61610 * 334.57169 * 13 12 2 42 42 H 1.09000 * 113.61783 * 105.47038 * 13 12 2 43 43 H 1.08999 * 113.61291 * 270.79616 * 14 13 12 44 44 H 1.00902 * 110.99963 * 231.38956 * 15 14 13 45 45 H 1.08996 * 109.46916 * 299.99442 * 16 15 14 46 46 H 1.09002 * 109.47156 * 59.99343 * 16 15 14 47 47 H 0.96993 * 120.00059 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00209 * 180.02562 * 23 22 20 49 49 H 1.08993 * 113.61610 * 220.08925 * 28 14 13 50 50 H 1.09004 * 113.69004 * 89.19968 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 1 3.1007 3.5196 0.8101 8 6 1.6355 4.9835 0.1279 9 6 1.9983 5.7360 -1.1715 10 8 3.2461 5.1495 -1.6016 11 6 3.1039 3.7327 -1.3599 12 6 2.1976 -1.2687 -0.0006 13 6 1.5591 -2.3482 -0.8903 14 6 1.9076 -3.3558 0.2205 15 7 0.8575 -4.3543 0.4613 16 6 1.2588 -5.6732 -0.0461 17 6 0.1594 -6.6693 0.2189 18 8 -0.8582 -6.3154 0.7761 19 7 0.3072 -7.9535 -0.1623 20 6 -0.6928 -8.8598 0.0792 21 1 -1.5988 -8.5445 0.5754 22 6 -0.5405 -10.1837 -0.3143 23 7 0.5621 -10.5671 -0.9175 24 14 -1.9028 -11.4185 0.0155 25 1 -3.1447 -10.9808 -0.6711 26 1 -1.4969 -12.7518 -0.4971 27 1 -2.1494 -11.5049 1.4773 28 6 1.8676 -2.1711 1.2001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 0.7590 2.5298 0.8908 33 1 0.7583 2.5302 -0.8891 34 1 0.5593 4.8217 0.1877 35 1 1.9889 5.5343 0.9995 36 1 1.2271 5.5832 -1.9265 37 1 2.1282 6.7994 -0.9706 38 1 4.0830 3.2572 -1.3035 39 1 2.5021 3.2726 -2.1436 40 1 3.2667 -1.1400 -0.1691 41 1 0.4875 -2.2146 -1.0381 42 1 2.0976 -2.5207 -1.8222 43 1 2.8971 -3.7998 0.1124 44 1 0.6205 -4.4007 1.4410 45 1 1.4411 -5.6097 -1.1188 46 1 2.1696 -5.9950 0.4589 47 1 1.1211 -8.2366 -0.6075 48 1 0.6682 -11.4913 -1.1925 49 1 2.6547 -2.2007 1.9534 50 1 0.8810 -1.9880 1.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701021466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:41 Heat of formation + Delta-G solvation = -94.244381 kcal Electronic energy + Delta-G solvation = -28894.863358 eV Core-core repulsion = 24729.699924 eV Total energy + Delta-G solvation = -4165.163434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.82516 -39.73929 -38.65220 -37.97623 -35.29557 -34.10507 -33.87276 -32.86936 -31.21500 -30.21548 -27.76792 -27.41512 -26.61760 -25.78867 -24.36359 -23.44241 -22.78063 -20.90113 -19.83831 -19.37621 -19.00042 -17.89023 -17.57740 -17.05314 -16.46650 -16.18331 -16.11110 -15.67857 -15.44934 -15.29173 -15.15059 -14.50023 -14.37423 -14.08696 -13.89293 -13.51662 -13.38006 -13.26115 -13.18850 -12.69974 -12.56352 -12.51519 -12.40164 -12.06650 -11.96502 -11.74858 -11.65825 -11.55882 -11.28918 -11.19658 -11.04213 -11.01078 -10.90299 -10.61648 -10.45581 -10.22725 -10.15410 -9.98392 -9.51673 -8.86945 -8.47497 -8.10950 -7.97761 -6.43089 -3.84154 2.31533 2.66838 3.18810 3.24723 3.28914 3.61210 3.89273 3.97705 4.10297 4.23676 4.33293 4.38855 4.41739 4.46671 4.50871 4.63494 4.74420 4.80617 4.84243 4.89587 4.92079 5.07107 5.12602 5.18163 5.22084 5.24507 5.28895 5.36893 5.40853 5.44551 5.49313 5.61849 5.63302 5.67208 5.77926 5.79039 5.81639 5.89477 5.98423 6.08244 6.26585 6.36767 6.43245 7.10990 7.24021 7.53382 7.62014 7.87748 8.04492 8.59567 9.16091 9.52704 10.04009 10.74492 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.001518 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.364824 B =18444.117239 C =18669.372099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.512 3.488 4 O -0.541 6.541 5 C -0.132 4.132 6 C -0.107 4.107 7 H 0.093 0.907 8 C -0.153 4.153 9 C 0.043 3.957 10 O -0.378 6.378 11 C 0.054 3.946 12 C 0.119 3.881 13 C -0.135 4.135 14 C 0.063 3.937 15 N -0.654 5.654 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.071 0.929 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 28.171 0.689 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.300 3.700 4 O -0.418 6.418 5 C -0.172 4.172 6 C -0.126 4.126 7 H 0.111 0.889 8 C -0.191 4.191 9 C -0.034 4.034 10 O -0.297 6.297 11 C -0.022 4.022 12 C 0.016 3.984 13 C -0.174 4.174 14 C -0.048 4.048 15 N -0.286 5.286 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.192 4.192 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.140 28.468 0.341 28.642 hybrid contribution 0.154 -1.430 0.574 1.549 sum 3.294 27.037 0.915 27.252 Atomic orbital electron populations 1.21859 0.79205 1.03707 1.02360 1.47842 1.07067 1.05703 1.72807 1.20687 0.88118 0.85408 0.75786 1.90690 1.13937 1.87407 1.49776 1.21820 0.98938 0.91839 1.04637 1.22314 0.97171 0.93016 1.00085 0.88890 1.23038 1.01092 0.95716 0.99218 1.23411 0.86924 0.98486 0.94598 1.89148 1.35222 1.19954 1.85344 1.23500 1.02120 0.82147 0.94465 1.22502 0.97754 0.80958 0.97221 1.23566 1.02370 0.93903 0.97560 1.22817 0.94220 0.91141 0.96659 1.60200 1.38702 1.05375 1.24371 1.21741 0.96235 0.89218 1.01128 1.19817 0.89133 0.83273 0.85211 1.90515 1.30681 1.78807 1.46941 1.41862 1.18835 1.06878 1.52375 1.19659 0.98456 0.88642 1.36330 0.87976 1.25260 0.97807 0.98013 0.96791 1.69600 1.25949 1.18659 1.40043 0.85914 0.80528 0.78902 0.78846 1.19882 1.20966 1.19927 1.23688 1.02914 0.95442 0.97175 0.92159 0.89886 0.91064 0.88372 0.88615 0.90215 0.90357 0.92318 0.89173 0.88167 0.92597 0.86351 0.88514 0.91226 0.90718 0.82900 0.89608 0.93800 0.77449 0.91801 0.91077 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 8.84 59.85 0.53 0.99 16 2 N -0.60 -5.32 3.08 -173.01 -0.53 -5.86 16 3 C 0.51 4.89 7.49 -10.99 -0.08 4.81 16 4 O -0.54 -7.02 14.50 5.56 0.08 -6.94 16 5 C -0.13 -0.81 3.48 -27.89 -0.10 -0.90 16 6 C -0.11 -0.77 2.70 -89.05 -0.24 -1.01 16 7 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 8 C -0.15 -0.80 6.74 -25.16 -0.17 -0.97 16 9 C 0.04 0.27 7.63 37.93 0.29 0.56 16 10 O -0.38 -3.77 11.65 -35.23 -0.41 -4.18 16 11 C 0.05 0.48 6.39 37.93 0.24 0.73 16 12 C 0.12 1.20 4.21 -67.12 -0.28 0.91 16 13 C -0.13 -1.43 7.34 -25.83 -0.19 -1.62 16 14 C 0.06 0.73 4.14 -66.81 -0.28 0.45 16 15 N -0.65 -9.97 6.19 -107.03 -0.66 -10.64 16 16 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 17 C 0.44 10.25 7.82 -10.99 -0.09 10.16 16 18 O -0.59 -15.63 15.78 5.55 0.09 -15.54 16 19 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.15 -1.54 7.19 -25.92 -0.19 -1.72 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.60 6.33 -51.93 -0.33 0.27 16 31 H 0.07 0.30 6.44 -51.93 -0.33 -0.04 16 32 H 0.10 0.42 7.40 -51.93 -0.38 0.04 16 33 H 0.10 0.45 7.94 -51.93 -0.41 0.03 16 34 H 0.08 0.28 7.73 -51.93 -0.40 -0.12 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 1.03 7.80 -51.93 -0.40 0.62 16 39 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 40 H 0.12 1.32 7.21 -51.93 -0.37 0.95 16 41 H 0.10 1.08 6.81 -51.93 -0.35 0.73 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 44 H 0.35 5.54 8.24 -39.29 -0.32 5.21 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.69 8.13 -51.93 -0.42 0.26 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.94 6.82 -51.93 -0.35 0.58 16 LS Contribution 400.30 15.07 6.03 6.03 Total: -1.00 -33.33 400.30 -8.69 -42.02 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.11 Total: 11.90 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.82 Total: 5.21 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.53 Total: -54.39 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.24 Total: -26.66 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.33 -8.69 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701021466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.227 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds