Wall clock time and date at job start Tue Mar 31 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 119.99702 * 2 1 4 4 O 1.21278 * 119.99848 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.99998 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47076 * 179.97438 * 5 3 2 7 7 H 1.08996 * 110.45687 * 307.60195 * 6 5 3 8 8 C 1.54517 * 110.51084 * 185.00159 * 6 5 3 9 9 C 1.54479 * 104.06037 * 241.21567 * 8 6 5 10 10 O 1.44433 * 104.80518 * 336.02227 * 9 8 6 11 11 C 1.44422 * 105.27452 * 40.51075 * 10 9 8 12 12 C 1.46502 * 120.00232 * 180.02562 * 2 1 3 13 13 C 1.53772 * 113.61395 * 39.13395 * 12 2 1 14 14 C 1.53958 * 87.01930 * 220.04822 * 13 12 2 15 15 N 1.46899 * 113.66243 * 139.93387 * 14 13 12 16 16 C 1.46901 * 111.00025 * 107.44507 * 15 14 13 17 17 C 1.50703 * 109.47419 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99777 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00101 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99802 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99387 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99688 * 179.97438 * 20 19 17 23 23 N 1.31400 * 120.00112 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99474 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47271 * 60.00376 * 24 22 20 26 26 H 1.48497 * 109.46763 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47163 * 299.99735 * 24 22 20 28 28 C 1.53777 * 87.10999 * 25.36300 * 14 13 12 29 29 H 1.08993 * 109.47188 * 89.99907 * 1 2 3 30 30 H 1.09002 * 109.46604 * 209.99346 * 1 2 3 31 31 H 1.08999 * 109.46961 * 329.99218 * 1 2 3 32 32 H 1.08997 * 109.47276 * 60.00073 * 5 3 2 33 33 H 1.09003 * 109.47409 * 300.00012 * 5 3 2 34 34 H 1.08991 * 110.51174 * 359.85967 * 8 6 5 35 35 H 1.08995 * 110.51247 * 122.57446 * 8 6 5 36 36 H 1.08997 * 110.37024 * 94.85221 * 9 8 6 37 37 H 1.08995 * 110.37315 * 217.18852 * 9 8 6 38 38 H 1.08995 * 110.37333 * 200.65712 * 11 10 9 39 39 H 1.09001 * 110.37394 * 78.31441 * 11 10 9 40 40 H 1.09000 * 112.84595 * 170.33534 * 12 2 1 41 41 H 1.08999 * 113.61610 * 334.57169 * 13 12 2 42 42 H 1.09000 * 113.61783 * 105.47038 * 13 12 2 43 43 H 1.08999 * 113.61291 * 270.79616 * 14 13 12 44 44 H 1.00902 * 110.99963 * 231.38956 * 15 14 13 45 45 H 1.08996 * 109.46916 * 299.99442 * 16 15 14 46 46 H 1.09002 * 109.47156 * 59.99343 * 16 15 14 47 47 H 0.96993 * 120.00059 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00209 * 180.02562 * 23 22 20 49 49 H 1.08993 * 113.61610 * 220.08925 * 28 14 13 50 50 H 1.09004 * 113.69004 * 89.19968 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 1 3.1007 3.5196 0.8101 8 6 1.6355 4.9835 0.1279 9 6 1.9983 5.7360 -1.1715 10 8 3.2461 5.1495 -1.6016 11 6 3.1039 3.7327 -1.3599 12 6 2.1976 -1.2687 -0.0006 13 6 1.5591 -2.3482 -0.8903 14 6 1.9076 -3.3558 0.2205 15 7 0.8575 -4.3543 0.4613 16 6 1.2588 -5.6732 -0.0461 17 6 0.1594 -6.6693 0.2189 18 8 -0.8582 -6.3154 0.7761 19 7 0.3072 -7.9535 -0.1623 20 6 -0.6928 -8.8598 0.0792 21 1 -1.5988 -8.5445 0.5754 22 6 -0.5405 -10.1837 -0.3143 23 7 0.5621 -10.5671 -0.9175 24 14 -1.9028 -11.4185 0.0155 25 1 -3.1447 -10.9808 -0.6711 26 1 -1.4969 -12.7518 -0.4971 27 1 -2.1494 -11.5049 1.4773 28 6 1.8676 -2.1711 1.2001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 0.7590 2.5298 0.8908 33 1 0.7583 2.5302 -0.8891 34 1 0.5593 4.8217 0.1877 35 1 1.9889 5.5343 0.9995 36 1 1.2271 5.5832 -1.9265 37 1 2.1282 6.7994 -0.9706 38 1 4.0830 3.2572 -1.3035 39 1 2.5021 3.2726 -2.1436 40 1 3.2667 -1.1400 -0.1691 41 1 0.4875 -2.2146 -1.0381 42 1 2.0976 -2.5207 -1.8222 43 1 2.8971 -3.7998 0.1124 44 1 0.6205 -4.4007 1.4410 45 1 1.4411 -5.6097 -1.1188 46 1 2.1696 -5.9950 0.4589 47 1 1.1211 -8.2366 -0.6075 48 1 0.6682 -11.4913 -1.1925 49 1 2.6547 -2.2007 1.9534 50 1 0.8810 -1.9880 1.6258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701021466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:40 Heat of formation + Delta-G solvation = -119.125886 kcal Electronic energy + Delta-G solvation = -28895.942301 eV Core-core repulsion = 24729.699924 eV Total energy + Delta-G solvation = -4166.242377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.55643 -40.49655 -40.03332 -39.20017 -36.32639 -35.83985 -34.66286 -33.96435 -33.21795 -30.72133 -28.77624 -28.05875 -27.76215 -26.70695 -25.97148 -24.23806 -23.52838 -21.51571 -21.17100 -20.52474 -19.98162 -19.78490 -18.33372 -17.89513 -17.48628 -17.06489 -16.85890 -16.76574 -16.55847 -16.36309 -16.14457 -15.96581 -15.73359 -15.17669 -15.08523 -14.60196 -14.23170 -14.19323 -14.01729 -13.75276 -13.50585 -13.39901 -13.20386 -13.16189 -12.99160 -12.94076 -12.82073 -12.56089 -12.43246 -12.20601 -12.12706 -12.09647 -11.85271 -11.81655 -11.52174 -11.50438 -11.47821 -10.76912 -10.73600 -10.32590 -10.01629 -9.60093 -9.33336 -8.46234 -5.95287 1.40385 1.42359 1.53297 1.61877 1.99951 2.05617 2.29806 2.97248 3.06700 3.21159 3.41223 3.47523 3.61738 3.67834 3.74181 3.83045 3.90083 3.95404 4.03898 4.21855 4.30361 4.31553 4.34041 4.44342 4.46340 4.56215 4.58504 4.59737 4.65989 4.77911 4.78948 4.82587 4.87092 4.88288 4.93574 4.97924 5.02970 5.06631 5.14407 5.22472 5.25967 5.40989 5.60381 5.86743 5.92282 6.13600 6.40064 6.44991 6.60133 7.12513 7.18084 7.56445 8.11307 8.70822 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040549 B = 0.001518 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.364824 B =18444.117239 C =18669.372099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.602 5.602 3 C 0.504 3.496 4 O -0.584 6.584 5 C -0.123 4.123 6 C -0.105 4.105 7 H 0.072 0.928 8 C -0.144 4.144 9 C 0.034 3.966 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.124 3.876 13 C -0.129 4.129 14 C 0.059 3.941 15 N -0.663 5.663 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.346 0.654 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.074 0.926 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 29.144 0.803 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.295 3.705 4 O -0.464 6.464 5 C -0.163 4.163 6 C -0.124 4.124 7 H 0.090 0.910 8 C -0.181 4.181 9 C -0.042 4.042 10 O -0.328 6.328 11 C -0.024 4.024 12 C 0.019 3.981 13 C -0.168 4.168 14 C -0.051 4.051 15 N -0.295 5.295 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.181 4.181 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.166 0.834 45 H 0.119 0.881 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.898 29.455 0.444 29.520 hybrid contribution 0.570 -1.662 0.524 1.834 sum 2.468 27.793 0.968 27.919 Atomic orbital electron populations 1.22055 0.77446 1.04761 1.03239 1.47929 1.08107 1.05061 1.72208 1.21355 0.87838 0.86553 0.74798 1.90680 1.15953 1.88020 1.51747 1.21856 0.98515 0.88955 1.06941 1.22244 0.97225 0.94818 0.98111 0.90967 1.23021 1.02409 0.94034 0.98671 1.23669 0.85926 0.99099 0.95522 1.89112 1.37412 1.20443 1.85831 1.23457 1.01172 0.81855 0.95899 1.22275 0.97218 0.81701 0.96898 1.23498 1.02193 0.93671 0.97410 1.22929 0.93597 0.90647 0.97910 1.60209 1.40401 1.04834 1.24071 1.21597 0.94290 0.88568 1.02391 1.20866 0.89886 0.83420 0.83267 1.90482 1.32736 1.79462 1.48208 1.41941 1.18592 1.07485 1.53042 1.19654 0.98854 0.90065 1.37989 0.90196 1.26042 1.00022 0.99120 0.96040 1.69665 1.27091 1.19308 1.40049 0.84983 0.77727 0.76885 0.78710 1.19676 1.19576 1.19659 1.23605 1.03177 0.94339 0.96994 0.91354 0.90712 0.88183 0.85609 0.86354 0.87487 0.90028 0.90999 0.88123 0.90745 0.92024 0.87717 0.88814 0.91093 0.89920 0.83415 0.88089 0.91675 0.77027 0.91312 0.90714 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 8.84 127.77 1.13 1.81 16 2 N -0.60 -9.68 3.08 -819.67 -2.53 -12.21 16 3 C 0.50 9.04 7.49 87.65 0.66 9.70 16 4 O -0.58 -15.39 14.50 -3.02 -0.04 -15.43 16 5 C -0.12 -1.17 3.48 29.85 0.10 -1.07 16 6 C -0.10 -1.38 2.70 -9.77 -0.03 -1.41 16 7 H 0.07 1.25 7.90 -2.39 -0.02 1.23 16 8 C -0.14 -1.14 6.74 31.61 0.21 -0.93 16 9 C 0.03 0.37 7.63 72.48 0.55 0.92 16 10 O -0.41 -8.10 11.65 -148.98 -1.74 -9.83 16 11 C 0.05 0.95 6.39 72.49 0.46 1.41 16 12 C 0.12 2.37 4.21 45.51 0.19 2.56 16 13 C -0.13 -2.58 7.34 31.18 0.23 -2.35 16 14 C 0.06 1.31 4.14 45.50 0.19 1.50 16 15 N -0.66 -19.54 6.19 -492.55 -3.05 -22.59 16 16 C 0.06 2.13 6.01 85.56 0.51 2.65 16 17 C 0.44 20.49 7.82 87.66 0.69 21.18 16 18 O -0.62 -33.77 15.78 -3.07 -0.05 -33.81 16 19 N -0.57 -29.21 5.29 -306.98 -1.62 -30.83 16 20 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 24 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 C -0.14 -2.68 7.19 31.12 0.22 -2.46 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.92 6.33 -2.39 -0.02 0.91 16 31 H 0.10 0.44 6.44 -2.39 -0.02 0.43 16 32 H 0.13 0.55 7.40 -2.39 -0.02 0.53 16 33 H 0.12 0.65 7.94 -2.39 -0.02 0.63 16 34 H 0.11 0.29 7.73 -2.39 -0.02 0.27 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 39 H 0.06 0.99 7.75 -2.39 -0.02 0.97 16 40 H 0.10 2.34 7.21 -2.39 -0.02 2.32 16 41 H 0.09 1.97 6.81 -2.39 -0.02 1.95 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.72 7.87 -2.39 -0.02 1.70 16 44 H 0.35 10.72 8.24 -89.69 -0.74 9.98 16 45 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 47 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 48 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 1.79 6.82 -2.38 -0.02 1.77 16 Total: -1.00 -74.03 400.30 -0.82 -74.85 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.51 Total: 39.33 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.41 Total: 15.16 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -6.92 Total: -114.82 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.83 Total: -59.08 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.03 -0.82 -74.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701021466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.279 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds