Wall clock time and date at job start Tue Mar 31 2020 23:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99822 * 2 1 4 4 C 1.52991 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47148 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99838 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00195 * 179.97438 * 5 4 3 8 8 C 1.45619 * 119.58063 * 0.02728 * 7 5 4 9 9 C 1.51076 * 111.11146 * 130.48135 * 8 7 5 10 10 C 1.50124 * 115.06241 * 46.06209 * 9 8 7 11 11 H 1.09005 * 108.65760 * 91.04787 * 10 9 8 12 12 C 1.51032 * 116.95159 * 327.01325 * 10 9 8 13 13 H 1.09003 * 104.93206 * 137.42359 * 12 10 9 14 14 C 1.53866 * 106.57048 * 247.86889 * 12 10 9 15 15 C 1.55569 * 100.95069 * 330.96191 * 14 12 10 16 16 N 1.48568 * 103.03739 * 40.08571 * 15 14 12 17 17 C 1.46897 * 111.00196 * 202.00920 * 16 15 14 18 18 C 1.50700 * 109.47010 * 293.86214 * 17 16 15 19 19 O 1.21291 * 120.00183 * 354.19719 * 18 17 16 20 20 N 1.34782 * 119.99943 * 174.19980 * 18 17 16 21 21 C 1.37103 * 119.99894 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99861 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99768 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99910 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00103 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47351 * 89.99601 * 25 23 21 27 27 H 1.48503 * 109.47162 * 209.99981 * 25 23 21 28 28 H 1.48510 * 109.47063 * 329.99698 * 25 23 21 29 29 C 1.45237 * 119.58034 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.47005 * 299.99613 * 1 2 3 31 31 H 1.08999 * 109.47200 * 60.00096 * 1 2 3 32 32 H 1.08999 * 109.46698 * 179.97438 * 1 2 3 33 33 H 1.09011 * 109.47190 * 59.99894 * 3 2 1 34 34 H 1.09000 * 109.47255 * 300.00035 * 3 2 1 35 35 H 1.09002 * 109.47714 * 60.00094 * 4 3 2 36 36 H 1.09007 * 109.47576 * 299.99551 * 4 3 2 37 37 H 1.09001 * 109.15059 * 250.90378 * 8 7 5 38 38 H 1.09005 * 109.14925 * 10.11785 * 8 7 5 39 39 H 1.08998 * 108.34941 * 167.81431 * 9 8 7 40 40 H 1.08997 * 108.35171 * 285.06428 * 9 8 7 41 41 H 1.09004 * 111.12408 * 213.03966 * 14 12 10 42 42 H 1.09002 * 111.12275 * 88.88475 * 14 12 10 43 43 H 1.09001 * 110.73622 * 158.52551 * 15 14 12 44 44 H 1.08999 * 110.73626 * 281.65398 * 15 14 12 45 45 H 1.09002 * 109.47169 * 53.85829 * 17 16 15 46 46 H 1.09000 * 109.47189 * 173.86662 * 17 16 15 47 47 H 0.96994 * 120.00043 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00090 * 179.97438 * 24 23 21 49 49 H 1.08998 * 108.48675 * 94.66472 * 29 7 5 50 50 H 1.09002 * 108.48656 * 337.23729 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 -0.0004 7 7 5.4888 2.7023 0.0009 8 6 6.3361 1.5181 0.0020 9 6 7.3976 1.6075 -1.0693 10 6 8.1172 2.9230 -1.1432 11 1 8.9997 2.8741 -0.5052 12 6 7.3220 4.1588 -0.7942 13 1 7.9929 4.7605 -0.1810 14 6 7.1664 4.9628 -2.0968 15 6 8.4590 4.5478 -2.8565 16 7 8.5729 3.0972 -2.5565 17 6 9.9550 2.6306 -2.7298 18 6 10.3384 2.7252 -4.1842 19 8 9.5085 3.0395 -5.0110 20 7 11.6036 2.4604 -4.5661 21 6 11.9523 2.5459 -5.8893 22 1 11.2131 2.8250 -6.6256 23 6 13.2566 2.2734 -6.2830 24 7 13.5908 2.3549 -7.5513 25 14 14.5349 1.7899 -5.0096 26 1 14.5390 0.3138 -4.8479 27 1 15.8763 2.2425 -5.4581 28 1 14.2057 2.4293 -3.7102 29 6 6.0697 4.0335 -0.0002 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8465 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8575 0.6436 -0.8891 36 1 3.8568 0.6440 0.8909 37 1 6.8174 1.4236 0.9754 38 1 5.7198 0.6373 -0.1791 39 1 8.1301 0.8198 -0.8931 40 1 6.9265 1.4261 -2.0353 41 1 7.1546 6.0345 -1.8979 42 1 6.2742 4.6568 -2.6431 43 1 8.3465 4.7126 -3.9281 44 1 9.3231 5.0901 -2.4728 45 1 10.6254 3.2522 -2.1362 46 1 10.0328 1.5946 -2.4002 47 1 12.2673 2.2093 -3.9049 48 1 14.5014 2.1650 -7.8261 49 1 6.2842 4.3179 1.0299 50 1 5.3346 4.7310 -0.4017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716033989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:31 Heat of formation + Delta-G solvation = -93.028162 kcal Electronic energy + Delta-G solvation = -30082.275426 eV Core-core repulsion = 25917.164731 eV Total energy + Delta-G solvation = -4165.110695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.97862 -39.51139 -38.24297 -37.90492 -36.08340 -34.01815 -33.41845 -32.20438 -31.74299 -31.48408 -29.31397 -27.15093 -26.92328 -25.24434 -24.15786 -23.35361 -23.14745 -21.31766 -20.09713 -19.40258 -18.52594 -18.10108 -17.82874 -16.71773 -16.59692 -16.14180 -16.00692 -15.91972 -15.51188 -15.08782 -14.93744 -14.74074 -14.59406 -14.24524 -13.95132 -13.72585 -13.39577 -13.20959 -13.16851 -13.00963 -12.64421 -12.47373 -12.26675 -12.18103 -11.90655 -11.78528 -11.64579 -11.58125 -11.33658 -11.26352 -11.03290 -10.91114 -10.64279 -10.61373 -10.38337 -10.05474 -10.02888 -9.98871 -9.56460 -8.89454 -8.59632 -8.19962 -8.09761 -6.32108 -3.83506 2.32048 2.59459 3.00266 3.04882 3.13266 3.46361 3.72795 3.81594 4.08711 4.23117 4.35619 4.43072 4.56088 4.64988 4.70155 4.76144 4.82967 4.92431 4.99672 5.01405 5.06337 5.16112 5.18424 5.25118 5.31022 5.33073 5.37850 5.41683 5.42290 5.46739 5.53967 5.58095 5.67510 5.70873 5.79291 5.83112 5.90733 5.99029 6.17288 6.22745 6.32253 6.43577 6.75532 7.05742 7.07133 7.10926 7.57366 7.86657 8.13418 8.59314 8.94434 9.41416 9.82651 10.81076 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002141 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.516180 B =13077.313719 C =13544.396180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.076 3.924 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.544 6.544 7 N -0.598 5.598 8 C 0.111 3.889 9 C -0.127 4.127 10 C 0.084 3.916 11 H 0.050 0.950 12 C -0.105 4.105 13 H 0.065 0.935 14 C -0.115 4.115 15 C 0.039 3.961 16 N -0.491 5.491 17 C 0.035 3.965 18 C 0.453 3.547 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 C 0.133 3.867 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.059 0.941 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.833 -2.382 21.730 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.180 4.180 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.331 5.331 8 C -0.013 4.013 9 C -0.165 4.165 10 C -0.024 4.024 11 H 0.068 0.932 12 C -0.124 4.124 13 H 0.084 0.916 14 C -0.154 4.154 15 C -0.088 4.088 16 N -0.216 5.216 17 C -0.097 4.097 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C 0.010 3.990 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.755 -2.125 20.631 27.302 hybrid contribution 1.925 0.200 1.405 2.391 sum -15.830 -1.925 22.036 27.201 Atomic orbital electron populations 1.22739 0.80536 1.02787 1.00226 1.87803 1.20115 1.27967 1.95575 1.22167 0.91874 0.84256 1.01791 1.21514 0.95450 0.95263 1.05759 1.20408 0.81862 0.91146 0.75808 1.90704 1.60522 1.40864 1.50046 1.47231 1.05544 1.07345 1.72996 1.21095 0.93146 0.87549 0.99499 1.20887 0.97999 0.97125 1.00513 1.21163 0.96775 0.94155 0.90332 0.93180 1.20585 0.96570 0.97158 0.98123 0.91636 1.22666 0.99255 0.98796 0.94645 1.23359 0.95582 0.87157 1.02745 1.64949 1.20420 1.17269 1.18929 1.22112 0.89620 1.01341 0.96655 1.19598 0.83011 0.84240 0.89305 1.90555 1.49397 1.50733 1.53206 1.42216 1.09049 1.62998 1.08942 1.19420 0.96917 1.44335 0.82575 0.86289 1.25035 0.97185 0.97770 0.96207 1.69618 1.19752 1.48263 1.14522 0.86675 0.82109 0.79448 0.81144 1.19602 1.20202 1.19621 1.20151 0.95177 0.84285 0.99379 0.93990 0.93862 0.89497 0.92458 0.92271 0.87614 0.87949 0.91669 0.89184 0.90668 0.89653 0.90734 0.90495 0.87972 0.94212 0.93478 0.89198 0.79796 0.91626 0.92302 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.69 10.70 -35.23 -0.38 -4.06 16 3 C 0.08 0.69 5.23 37.15 0.19 0.88 16 4 C -0.14 -1.13 4.38 -27.89 -0.12 -1.25 16 5 C 0.52 5.55 7.65 -10.98 -0.08 5.47 16 6 O -0.54 -7.60 15.37 5.55 0.09 -7.52 16 7 N -0.60 -5.77 3.06 -179.02 -0.55 -6.32 16 8 C 0.11 0.83 6.25 -5.48 -0.03 0.80 16 9 C -0.13 -1.23 5.55 -29.13 -0.16 -1.39 16 10 C 0.08 0.95 2.75 -68.67 -0.19 0.76 16 11 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 12 C -0.10 -1.09 2.51 -93.21 -0.23 -1.32 16 13 H 0.07 0.61 7.99 -51.93 -0.41 0.20 16 14 C -0.12 -1.38 6.42 -24.91 -0.16 -1.54 16 15 C 0.04 0.59 5.79 -1.53 -0.01 0.59 16 16 N -0.49 -7.51 4.32 -225.70 -0.97 -8.49 16 17 C 0.03 0.56 5.13 -4.98 -0.03 0.54 16 18 C 0.45 10.11 7.48 -10.98 -0.08 10.03 16 19 O -0.56 -14.72 14.42 5.55 0.08 -14.64 16 20 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 21 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.13 1.32 5.96 -6.77 -0.04 1.28 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.52 8.10 -51.92 -0.42 0.10 16 34 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.11 0.78 7.57 -51.93 -0.39 0.39 16 36 H 0.10 0.64 7.95 -51.92 -0.41 0.23 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.53 5.74 -51.93 -0.30 0.23 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.90 6.92 -51.93 -0.36 1.54 16 44 H 0.04 0.58 7.88 -51.93 -0.41 0.17 16 45 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 46 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 50 H 0.09 1.03 6.68 -51.93 -0.35 0.68 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -34.60 392.34 -8.19 -42.79 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.29 Total: 8.21 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.08 Total: 8.50 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.80 Total: -53.67 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.21 Total: -26.22 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.60 -8.19 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716033989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.238 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds