Wall clock time and date at job start Tue Mar 31 2020 22:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46771 * 124.34935 * 2 1 4 4 C 1.54482 * 105.47266 * 162.98314 * 3 2 1 5 5 C 1.54628 * 101.76263 * 25.41905 * 4 3 2 6 6 H 1.09003 * 110.48346 * 216.38524 * 5 4 3 7 7 C 1.53001 * 110.48313 * 93.87979 * 5 4 3 8 8 C 1.50709 * 109.46846 * 174.99853 * 7 5 4 9 9 O 1.21275 * 119.99909 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00010 * 179.97438 * 8 7 5 11 11 C 1.46923 * 120.62919 * 0.02562 * 10 8 7 12 12 C 1.53193 * 108.77178 * 233.60736 * 11 10 8 13 13 C 1.53032 * 109.31285 * 305.36426 * 12 11 10 14 14 C 1.53036 * 109.53960 * 61.36689 * 13 12 11 15 15 C 1.53001 * 109.50118 * 178.64935 * 14 13 12 16 16 O 1.42905 * 109.47191 * 299.93663 * 15 14 13 17 17 N 1.46504 * 109.49935 * 58.58457 * 14 13 12 18 18 C 1.36943 * 119.99781 * 60.00229 * 17 14 13 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 14 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 14 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48496 * 109.47031 * 59.99836 * 22 20 18 24 24 H 1.48497 * 109.47267 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47169 * 300.00118 * 22 20 18 26 26 C 1.46924 * 120.62998 * 179.97438 * 10 8 7 27 27 C 1.34414 * 124.35406 * 180.02562 * 2 1 3 28 28 O 1.21286 * 124.93869 * 0.44872 * 27 2 1 29 29 H 1.08997 * 109.46964 * 90.00050 * 1 2 3 30 30 H 1.09006 * 109.46779 * 210.00088 * 1 2 3 31 31 H 1.09001 * 109.47160 * 329.99275 * 1 2 3 32 32 H 1.09000 * 110.24429 * 43.98818 * 3 2 1 33 33 H 1.08997 * 110.25010 * 281.98881 * 3 2 1 34 34 H 1.08991 * 110.97061 * 267.29654 * 4 3 2 35 35 H 1.09004 * 110.99400 * 143.55185 * 4 3 2 36 36 H 1.08995 * 109.47765 * 54.99955 * 7 5 4 37 37 H 1.08999 * 109.47354 * 294.99396 * 7 5 4 38 38 H 1.08994 * 109.58894 * 113.82187 * 11 10 8 39 39 H 1.09000 * 109.70296 * 353.46353 * 11 10 8 40 40 H 1.09007 * 109.49849 * 185.41278 * 12 11 10 41 41 H 1.09006 * 109.52538 * 65.33312 * 12 11 10 42 42 H 1.08996 * 109.46327 * 301.34114 * 13 12 11 43 43 H 1.09004 * 109.46303 * 181.38548 * 13 12 11 44 44 H 1.08997 * 109.46979 * 59.93190 * 15 14 13 45 45 H 1.09001 * 109.47396 * 179.97438 * 15 14 13 46 46 H 0.96697 * 114.00241 * 179.97438 * 16 15 14 47 47 H 0.97000 * 120.00410 * 240.00555 * 17 14 13 48 48 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.58738 * 6.60506 * 26 10 8 50 50 H 1.09002 * 109.58376 * 246.17907 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7487 0.4357 5 6 3.6898 -0.7378 0.0100 6 1 4.2347 -1.3455 0.7324 7 6 4.2929 -0.8993 -1.3868 8 6 4.3837 -2.3643 -1.7284 9 8 4.0039 -3.1971 -0.9328 10 7 4.8869 -2.7490 -2.9181 11 6 5.3516 -1.7518 -3.8920 12 6 4.6502 -2.0056 -5.2301 13 6 4.8833 -3.4567 -5.6564 14 6 4.2842 -4.3999 -4.6107 15 6 4.4880 -5.8499 -5.0544 16 8 3.8389 -6.0596 -6.3102 17 7 2.8514 -4.1282 -4.4707 18 6 2.0205 -4.2620 -5.5510 19 1 2.4214 -4.5674 -6.5061 20 6 0.6638 -3.9990 -5.4197 21 7 0.1753 -3.6262 -4.2558 22 14 -0.4685 -4.1740 -6.8951 23 1 -0.4206 -5.5723 -7.3926 24 1 -1.8586 -3.8389 -6.4947 25 1 -0.0263 -3.2504 -7.9707 26 6 4.9824 -4.1734 -3.2652 27 6 2.2235 -1.1097 -0.0005 28 8 1.7947 -2.2442 -0.0088 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.8985 1.9383 0.7103 33 1 2.3306 1.6431 -1.0003 34 1 3.8269 0.8448 1.5141 35 1 4.4758 1.3010 -0.0962 36 1 5.2900 -0.4595 -1.4052 37 1 3.6597 -0.3946 -2.1165 38 1 6.4299 -1.8426 -4.0217 39 1 5.1093 -0.7503 -3.5365 40 1 5.0564 -1.3343 -5.9868 41 1 3.5807 -1.8258 -5.1207 42 1 5.9538 -3.6425 -5.7423 43 1 4.4059 -3.6331 -6.6204 44 1 5.5541 -6.0516 -5.1585 45 1 4.0616 -6.5213 -4.3091 46 1 3.9272 -6.9593 -6.6532 47 1 2.4914 -3.8535 -3.6129 48 1 -0.7727 -3.4428 -4.1640 49 1 4.4944 -4.7707 -2.4949 50 1 6.0309 -4.4608 -3.3439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733823545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:01 Heat of formation + Delta-G solvation = -119.257496 kcal Electronic energy + Delta-G solvation = -32489.733040 eV Core-core repulsion = 28323.484955 eV Total energy + Delta-G solvation = -4166.248084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78569 -40.87801 -39.16289 -37.39120 -37.10254 -35.53804 -34.68610 -33.70942 -32.64333 -31.01331 -30.19592 -27.89428 -27.20299 -26.62352 -25.75563 -25.21231 -23.03153 -22.30731 -20.89763 -20.17721 -19.61488 -19.14193 -18.14033 -17.92390 -17.46156 -17.21149 -16.87597 -16.60517 -16.30564 -15.92013 -15.80862 -15.36117 -15.19773 -14.82744 -14.78475 -14.62017 -14.39368 -14.21902 -13.97051 -13.72927 -13.45472 -13.38357 -13.27642 -13.23159 -13.13787 -12.89896 -12.80182 -12.65236 -12.63574 -12.07333 -12.05445 -11.87020 -11.70404 -11.64409 -11.48818 -11.30345 -10.81038 -10.68614 -10.56692 -10.47449 -9.61627 -9.41903 -8.87533 -7.76497 -5.03990 1.41380 1.45903 1.51563 1.69503 1.79485 2.17971 2.20862 2.62944 3.39172 3.42801 3.50842 3.68335 3.75833 3.80228 3.92459 4.04995 4.16843 4.22298 4.28523 4.31025 4.39014 4.41959 4.43687 4.52604 4.58083 4.59436 4.62779 4.67793 4.72406 4.74680 4.81942 4.82569 4.93966 4.95722 5.04312 5.05636 5.13863 5.25467 5.34692 5.59525 5.67279 5.71107 5.73552 5.88460 6.24400 6.41927 6.59965 7.11492 7.34489 7.41422 7.47839 8.21631 8.45125 9.46149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.004742 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.451197 B = 5903.752656 C = 7440.974178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.634 5.634 3 C 0.094 3.906 4 C -0.109 4.109 5 C -0.103 4.103 6 H 0.098 0.902 7 C -0.111 4.111 8 C 0.491 3.509 9 O -0.570 6.570 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.127 4.127 13 C -0.107 4.107 14 C 0.173 3.827 15 C 0.076 3.924 16 O -0.566 6.566 17 N -0.715 5.715 18 C -0.179 4.179 19 H 0.095 0.905 20 C -0.101 4.101 21 N -0.980 5.980 22 Si 0.963 3.037 23 H -0.285 1.285 24 H -0.308 1.308 25 H -0.279 1.279 26 C 0.121 3.879 27 C 0.489 3.511 28 O -0.567 6.567 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.016 0.984 46 H 0.375 0.625 47 H 0.361 0.639 48 H 0.236 0.764 49 H 0.051 0.949 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 14.813 5.436 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.369 5.369 3 C -0.027 4.027 4 C -0.146 4.146 5 C -0.126 4.126 6 H 0.116 0.884 7 C -0.151 4.151 8 C 0.280 3.720 9 O -0.448 6.448 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.165 4.165 13 C -0.146 4.146 14 C 0.082 3.918 15 C -0.004 4.004 16 O -0.371 6.371 17 N -0.353 5.353 18 C -0.311 4.311 19 H 0.113 0.887 20 C -0.290 4.290 21 N -0.634 5.634 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.236 1.236 25 H -0.205 1.205 26 C -0.003 4.003 27 C 0.277 3.723 28 O -0.444 6.444 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.034 0.966 46 H 0.223 0.777 47 H 0.192 0.808 48 H 0.045 0.955 49 H 0.069 0.931 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.499 14.395 5.752 22.639 hybrid contribution -1.996 -1.535 -0.551 2.577 sum 14.503 12.860 5.200 20.069 Atomic orbital electron populations 1.21512 0.78614 1.03253 1.01218 1.48446 1.06747 1.08287 1.73459 1.22463 0.90749 0.86047 1.03453 1.22783 0.97075 0.90678 1.04061 1.21741 0.91543 1.00787 0.98496 0.88382 1.21641 1.05673 0.91682 0.96116 1.21420 0.76198 0.92917 0.81484 1.90783 1.47953 1.55604 1.50461 1.48015 1.62454 1.06989 1.16264 1.22003 0.99657 0.91899 0.87381 1.21763 1.00140 0.97074 0.97564 1.21717 0.99737 0.94846 0.98323 1.20443 0.84624 0.92841 0.93865 1.22636 0.95391 0.97197 0.85197 1.86720 1.78535 1.34903 1.36969 1.42599 1.02419 1.80550 1.09731 1.19783 0.88473 1.31471 0.91423 0.88709 1.25520 0.99005 1.05793 0.98694 1.69946 1.11569 1.57339 1.24584 0.85325 0.77755 0.77703 0.79736 1.21171 1.23562 1.20532 1.21551 1.00796 0.82806 0.95099 1.21744 0.91230 0.84160 0.75148 1.90806 1.79464 1.23938 1.50164 0.94352 0.93732 0.86940 0.87467 0.90031 0.88031 0.84799 0.82504 0.88847 0.87807 0.87857 0.89132 0.95029 0.89962 0.93769 0.91136 0.96602 0.77709 0.80830 0.95529 0.93074 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.73 10.96 127.77 1.40 4.13 16 2 N -0.63 -18.28 3.33 -842.89 -2.81 -21.09 16 3 C 0.09 1.43 7.35 86.83 0.64 2.06 16 4 C -0.11 -1.29 6.71 31.65 0.21 -1.07 16 5 C -0.10 -2.62 2.54 -10.80 -0.03 -2.65 16 6 H 0.10 2.71 7.90 -2.39 -0.02 2.69 16 7 C -0.11 -2.66 3.46 29.85 0.10 -2.56 16 8 C 0.49 17.89 7.50 87.66 0.66 18.55 16 9 O -0.57 -27.47 13.40 16.65 0.22 -27.25 16 10 N -0.60 -19.59 2.87 -818.76 -2.35 -21.94 16 11 C 0.11 2.57 6.34 86.36 0.55 3.12 16 12 C -0.13 -3.86 5.93 30.67 0.18 -3.68 16 13 C -0.11 -3.56 4.39 30.62 0.13 -3.42 16 14 C 0.17 6.84 0.68 3.71 0.00 6.85 16 15 C 0.08 2.74 6.08 71.98 0.44 3.18 16 16 O -0.57 -21.57 9.97 -148.98 -1.49 -23.06 16 17 N -0.72 -38.27 4.22 -302.87 -1.28 -39.55 16 18 C -0.18 -10.43 8.29 84.03 0.70 -9.74 16 19 H 0.10 5.38 5.31 -2.91 -0.02 5.37 16 20 C -0.10 -6.31 5.50 84.86 0.47 -5.84 16 21 N -0.98 -67.42 13.06 21.65 0.28 -67.14 16 22 Si 0.96 50.98 29.55 68.60 2.03 53.00 16 23 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 24 H -0.31 -16.74 7.11 99.48 0.71 -16.03 16 25 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 26 C 0.12 4.30 5.15 86.39 0.45 4.74 16 27 C 0.49 18.62 7.02 87.90 0.62 19.24 16 28 O -0.57 -30.45 15.78 16.62 0.26 -30.19 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.50 7.93 -2.38 -0.02 1.48 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.13 0.52 7.87 -2.38 -0.02 0.50 16 36 H 0.16 1.88 7.91 -2.39 -0.02 1.86 16 37 H 0.09 2.31 7.68 -2.39 -0.02 2.29 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.80 5.94 -2.39 -0.01 1.79 16 40 H 0.09 2.15 8.14 -2.38 -0.02 2.14 16 41 H 0.03 1.32 7.53 -2.38 -0.02 1.30 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.04 1.73 6.82 -2.38 -0.02 1.72 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.38 10.45 9.12 -74.06 -0.68 9.78 16 47 H 0.36 22.74 7.65 -92.71 -0.71 22.03 16 48 H 0.24 16.12 8.31 -92.71 -0.77 15.34 16 49 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16 50 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -102.97 387.93 0.97 -102.01 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.42 Total: 42.30 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 6.51 Total: 32.90 kcal Atomic # 7 Polarization: -143.57 SS G_CDS: -6.15 Total: -149.72 kcal Atomic # 8 Polarization: -79.49 SS G_CDS: -1.00 Total: -80.49 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.03 Total: 53.00 kcal Total: -102.97 0.97 -102.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733823545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.250 kcal (2) G-P(sol) polarization free energy of solvation -102.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds