Wall clock time and date at job start Tue Mar 31 2020 23:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99615 * 2 1 4 4 C 1.52997 * 109.46900 * 179.97438 * 3 2 1 5 5 C 1.50695 * 112.85424 * 309.66974 * 4 3 2 6 6 O 1.21282 * 120.00383 * 228.80142 * 5 4 3 7 7 N 1.34779 * 120.00024 * 48.79917 * 5 4 3 8 8 C 1.46496 * 120.00092 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47064 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.78472 * 284.18945 * 9 8 7 11 11 C 1.53509 * 113.47430 * 153.38126 * 9 8 7 12 12 C 1.53517 * 83.57536 * 219.20766 * 11 9 8 13 13 N 1.47473 * 113.47472 * 55.00003 * 9 8 7 14 14 C 1.46895 * 111.00172 * 253.46865 * 13 9 8 15 15 C 1.50700 * 109.47527 * 198.36959 * 14 13 9 16 16 O 1.21290 * 119.99899 * 353.85353 * 15 14 13 17 17 N 1.34779 * 120.00289 * 173.85462 * 15 14 13 18 18 C 1.37091 * 120.00229 * 180.02562 * 17 15 14 19 19 H 1.08009 * 120.00099 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00119 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00193 * 359.72620 * 20 18 17 22 22 Si 1.86804 * 119.99824 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47084 * 120.00289 * 22 20 18 25 25 H 1.48503 * 109.46718 * 240.00158 * 22 20 18 26 26 C 1.53784 * 113.68993 * 80.93640 * 4 3 2 27 27 C 1.53783 * 87.07805 * 89.12379 * 26 4 3 28 28 C 1.53778 * 87.08131 * 25.43683 * 27 26 4 29 29 H 1.08994 * 109.47689 * 59.99720 * 1 2 3 30 30 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46854 * 299.99277 * 1 2 3 32 32 H 1.09005 * 109.46775 * 60.00596 * 3 2 1 33 33 H 1.08999 * 109.46841 * 300.00300 * 3 2 1 34 34 H 0.97004 * 119.99846 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47442 * 60.00402 * 8 7 5 36 36 H 1.09000 * 109.47369 * 300.00065 * 8 7 5 37 37 H 1.09002 * 114.17215 * 105.55870 * 11 9 8 38 38 H 1.09003 * 114.34777 * 332.86478 * 11 9 8 39 39 H 1.08995 * 113.47564 * 271.26088 * 12 11 9 40 40 H 1.08998 * 113.52651 * 140.80095 * 12 11 9 41 41 H 1.09007 * 109.47379 * 78.36792 * 14 13 9 42 42 H 1.09004 * 109.46985 * 318.36991 * 14 13 9 43 43 H 0.97002 * 119.99768 * 359.97438 * 17 15 14 44 44 H 0.96999 * 120.00213 * 179.97438 * 21 20 18 45 45 H 1.08999 * 113.62049 * 203.67145 * 26 4 3 46 46 H 1.09001 * 113.61482 * 334.57982 * 26 4 3 47 47 H 1.09002 * 113.61948 * 270.87855 * 27 26 4 48 48 H 1.09003 * 113.61154 * 139.98343 * 27 26 4 49 49 H 1.09003 * 113.61255 * 220.01931 * 28 27 26 50 50 H 1.08995 * 113.61882 * 89.11434 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.0484 0.2551 1.0699 6 8 4.9518 0.6081 1.7981 7 7 3.5033 -0.9687 1.2171 8 6 4.0017 -1.8723 2.2570 9 6 3.2185 -3.1859 2.2093 10 1 2.2194 -3.0974 2.6361 11 6 4.0082 -4.3883 2.7452 12 6 3.3369 -5.1291 1.5801 13 7 3.2363 -3.8327 0.8841 14 6 1.9366 -3.6947 0.2135 15 6 1.8310 -4.7135 -0.8919 16 8 2.7877 -5.4036 -1.1740 17 7 0.6734 -4.8579 -1.5670 18 6 0.5771 -5.7851 -2.5722 19 1 1.4291 -6.3996 -2.8235 20 6 -0.6164 -5.9342 -3.2678 21 7 -1.6546 -5.1903 -2.9586 22 14 -0.7473 -7.1972 -4.6380 23 1 0.5499 -7.9052 -4.7842 24 1 -1.8117 -8.1783 -4.3068 25 1 -1.0843 -6.5123 -5.9118 26 6 4.1344 0.9146 -1.3897 27 6 4.2021 2.4403 -1.5703 28 6 4.2607 2.5403 -0.0369 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6886 1.8464 0.8901 33 1 1.6884 1.8464 -0.8900 34 1 2.7810 -1.2512 0.6346 35 1 3.8730 -1.4075 3.2345 36 1 5.0593 -2.0739 2.0869 37 1 3.6909 -4.7270 3.7315 38 1 5.0899 -4.2941 2.6500 39 1 2.3694 -5.5592 1.8389 40 1 3.9943 -5.8405 1.0803 41 1 1.8489 -2.6926 -0.2064 42 1 1.1362 -3.8575 0.9354 43 1 -0.0918 -4.3062 -1.3411 44 1 -2.4877 -5.2942 -3.4444 45 1 5.1126 0.4349 -1.3581 46 1 3.4432 0.4241 -2.0752 47 1 3.2978 2.8696 -2.0018 48 1 5.1115 2.7815 -2.0652 49 1 3.6714 3.3622 0.3699 50 1 5.2734 2.5049 0.3646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754488974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:31 Heat of formation + Delta-G solvation = -81.296865 kcal Electronic energy + Delta-G solvation = -31349.920337 eV Core-core repulsion = 27185.318350 eV Total energy + Delta-G solvation = -4164.601988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89856 -41.32638 -39.60537 -38.94150 -38.05395 -35.97223 -35.39724 -33.33301 -32.07471 -30.53817 -28.97034 -27.55004 -27.14962 -26.56596 -25.38453 -25.35642 -23.87344 -21.87412 -21.09923 -20.79773 -19.92346 -19.78449 -18.45672 -17.80255 -17.38531 -17.23662 -17.02795 -16.63275 -16.50212 -16.45828 -16.11716 -15.80077 -15.60413 -15.50889 -15.21303 -15.10336 -14.71456 -14.22400 -13.82085 -13.67530 -13.55823 -13.37711 -13.26674 -13.06080 -12.91299 -12.82597 -12.71159 -12.43990 -12.36595 -12.20618 -12.14404 -12.12929 -11.91162 -11.64712 -11.48139 -11.44089 -11.32620 -10.76426 -10.50012 -10.30898 -10.01216 -9.94799 -9.77875 -8.46995 -5.94848 1.35525 1.41652 1.55018 1.63004 2.02802 2.23299 2.28932 2.64845 2.84797 3.19572 3.25131 3.48756 3.55833 3.58295 3.76840 3.82585 3.89907 3.95212 4.08383 4.19274 4.26045 4.33826 4.36016 4.42010 4.45314 4.53331 4.56920 4.62168 4.62972 4.67079 4.76826 4.83443 4.86169 4.88998 4.95991 4.99377 5.01339 5.07876 5.15179 5.19853 5.34457 5.41781 5.43833 5.62179 5.91833 6.09501 6.14181 6.60154 6.70186 7.12995 7.33875 7.55169 8.11444 8.70436 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.003493 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.603285 B = 8013.826372 C = 9560.454178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.089 3.911 4 C -0.113 4.113 5 C 0.522 3.478 6 O -0.589 6.589 7 N -0.706 5.706 8 C 0.138 3.862 9 C 0.017 3.983 10 H 0.101 0.899 11 C -0.115 4.115 12 C 0.006 3.994 13 N -0.463 5.463 14 C 0.025 3.975 15 C 0.440 3.560 16 O -0.618 6.618 17 N -0.569 5.569 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.916 5.916 22 Si 0.988 3.012 23 H -0.276 1.276 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.104 4.104 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 15.719 9.698 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C 0.012 3.988 4 C -0.117 4.117 5 C 0.309 3.691 6 O -0.471 6.471 7 N -0.361 5.361 8 C 0.013 3.987 9 C -0.093 4.093 10 H 0.119 0.881 11 C -0.153 4.153 12 C -0.123 4.123 13 N -0.187 5.187 14 C -0.107 4.107 15 C 0.228 3.772 16 O -0.504 6.504 17 N -0.207 5.207 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.557 5.557 22 Si 0.812 3.188 23 H -0.201 1.201 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.255 0.745 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.011 15.510 9.398 18.573 hybrid contribution -1.678 -0.846 -0.507 1.946 sum 2.334 14.664 8.890 17.306 Atomic orbital electron populations 1.22905 0.78803 1.03703 1.01293 1.87556 1.21755 1.28507 1.95625 1.22325 0.88841 0.84975 1.02622 1.22350 0.96108 0.97902 0.95297 1.20735 0.81623 0.82557 0.84150 1.90620 1.31956 1.76866 1.47632 1.46330 1.38811 1.14631 1.36303 1.21330 0.97732 0.88108 0.91502 1.23827 1.00545 0.94268 0.90612 0.88090 1.23158 1.00579 0.93137 0.98443 1.23547 1.00569 0.93498 0.94644 1.68880 1.27599 1.07586 1.14597 1.22401 0.93273 0.98929 0.96094 1.20644 0.83194 0.87163 0.86234 1.90505 1.38859 1.50389 1.70631 1.41882 1.12089 1.35041 1.31647 1.19651 0.98712 1.15723 1.12086 0.90641 1.25943 0.94269 0.99863 1.00729 1.69656 1.02902 1.40562 1.42603 0.84940 0.78143 0.77900 0.77782 1.20093 1.19543 1.19561 1.22898 1.00700 0.98998 0.93759 1.22871 1.03993 0.93921 0.95546 1.22788 1.00749 0.93398 0.97214 0.92763 0.89542 0.92385 0.91402 0.89746 0.74506 0.90363 0.92569 0.87323 0.88558 0.91600 0.91886 0.88009 0.90442 0.76989 0.91288 0.91223 0.90590 0.87783 0.89926 0.88971 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -8.89 7.59 -148.98 -1.13 -10.02 16 3 C 0.09 1.58 5.26 71.98 0.38 1.96 16 4 C -0.11 -2.49 1.12 -52.40 -0.06 -2.54 16 5 C 0.52 15.11 6.93 87.65 0.61 15.72 16 6 O -0.59 -20.45 15.90 -3.04 -0.05 -20.50 16 7 N -0.71 -19.57 5.15 -463.06 -2.38 -21.95 16 8 C 0.14 3.53 5.82 86.38 0.50 4.03 16 9 C 0.02 0.41 3.25 42.19 0.14 0.54 16 10 H 0.10 2.07 7.63 -2.39 -0.02 2.05 16 11 C -0.12 -2.50 8.00 30.94 0.25 -2.26 16 12 C 0.01 0.20 6.34 83.58 0.53 0.73 16 13 N -0.46 -15.19 5.74 -906.72 -5.21 -20.40 16 14 C 0.02 0.86 5.09 85.56 0.44 1.29 16 15 C 0.44 20.95 7.46 87.66 0.65 21.60 16 16 O -0.62 -34.52 14.98 -3.06 -0.05 -34.56 16 17 N -0.57 -28.72 5.29 -306.98 -1.62 -30.34 16 18 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 19 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 20 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 21 N -0.92 -47.97 13.05 21.66 0.28 -47.69 16 22 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 C -0.13 -2.73 7.20 31.12 0.22 -2.51 16 27 C -0.13 -1.93 7.73 31.12 0.24 -1.69 16 28 C -0.10 -1.89 7.00 31.12 0.22 -1.67 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.08 1.16 7.34 -2.39 -0.02 1.15 16 34 H 0.41 11.47 3.57 -92.71 -0.33 11.14 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.61 7.88 -2.39 -0.02 1.59 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 2.09 7.94 -2.39 -0.02 2.07 16 39 H 0.07 2.00 7.84 -2.39 -0.02 1.98 16 40 H 0.06 2.31 7.97 -2.39 -0.02 2.29 16 41 H 0.10 3.35 6.56 -2.38 -0.02 3.33 16 42 H 0.08 2.30 7.56 -2.38 -0.02 2.28 16 43 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 44 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 45 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 46 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 47 H 0.10 1.18 7.64 -2.39 -0.02 1.16 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 1.29 8.10 -2.39 -0.02 1.27 16 50 H 0.08 1.81 7.43 -2.39 -0.02 1.80 16 Total: -1.00 -72.74 399.97 -1.59 -74.33 By element: Atomic # 1 Polarization: 47.64 SS G_CDS: -0.11 Total: 47.54 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.65 Total: 19.15 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -8.93 Total: -120.37 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -1.23 Total: -65.08 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -72.74 -1.59 -74.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754488974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.966 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds