Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00032 * 2 1 4 4 C 1.53003 * 109.47331 * 66.04736 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47032 * 180.02562 * 5 4 3 7 7 C 1.46495 * 119.99578 * 269.99713 * 6 5 4 8 8 C 1.34774 * 120.00212 * 89.99750 * 6 5 4 9 9 O 1.21612 * 119.99795 * 4.43490 * 8 6 5 10 10 C 1.47098 * 119.99990 * 184.71129 * 8 6 5 11 11 C 1.32088 * 118.87723 * 279.77953 * 10 8 6 12 12 C 1.50265 * 122.58105 * 180.14609 * 11 10 8 13 13 O 1.42896 * 110.14380 * 344.80572 * 12 11 10 14 14 C 1.43267 * 113.09980 * 50.32829 * 13 12 11 15 15 C 1.50420 * 118.87807 * 100.05049 * 10 8 6 16 16 C 1.46898 * 111.00207 * 236.04331 * 2 1 3 17 17 C 1.50700 * 109.46954 * 293.95650 * 16 2 1 18 18 O 1.21286 * 120.00032 * 359.97438 * 17 16 2 19 19 N 1.34778 * 119.99737 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99952 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99655 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99769 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47513 * 90.00588 * 24 22 20 26 26 H 1.48510 * 109.47308 * 210.00390 * 24 22 20 27 27 H 1.48502 * 109.47341 * 330.00335 * 24 22 20 28 28 H 1.08996 * 109.46824 * 59.99570 * 1 2 3 29 29 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46963 * 300.00071 * 1 2 3 31 31 H 1.09001 * 109.47177 * 306.04415 * 3 2 1 32 32 H 1.09003 * 109.47226 * 186.04356 * 3 2 1 33 33 H 1.08996 * 109.47386 * 60.00194 * 4 3 2 34 34 H 1.08998 * 109.46776 * 299.99477 * 4 3 2 35 35 H 1.08996 * 109.46995 * 59.99752 * 5 4 3 36 36 H 1.09002 * 109.46485 * 299.99781 * 5 4 3 37 37 H 1.09000 * 109.47600 * 274.19908 * 7 6 5 38 38 H 1.09001 * 109.47458 * 34.20585 * 7 6 5 39 39 H 1.09005 * 109.46904 * 154.20063 * 7 6 5 40 40 H 1.07996 * 118.70881 * 0.37138 * 11 10 8 41 41 H 1.08999 * 109.50243 * 224.50102 * 12 11 10 42 42 H 1.09001 * 109.08014 * 104.84304 * 12 11 10 43 43 H 1.09007 * 109.63663 * 171.47515 * 14 13 12 44 44 H 1.09000 * 109.64187 * 50.86098 * 14 13 12 45 45 H 1.09000 * 109.45579 * 283.35485 * 15 10 8 46 46 H 1.08998 * 109.45381 * 43.28689 * 15 10 8 47 47 H 1.09003 * 109.46693 * 53.95457 * 16 2 1 48 48 H 1.09001 * 109.47091 * 173.95217 * 16 2 1 49 49 H 0.97003 * 119.99904 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99984 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1793 3.4861 1.3180 6 7 1.8313 4.1428 2.5805 7 6 0.5745 4.8863 2.6972 8 6 2.6675 4.0629 3.6345 9 8 3.7466 3.5152 3.5143 10 6 2.2722 4.6329 4.9317 11 6 2.3972 5.9341 5.1214 12 6 2.0222 6.6031 6.4136 13 8 1.2207 5.7259 7.2074 14 6 1.7936 4.4212 7.3558 15 6 1.7453 3.7132 5.9990 16 6 1.9955 -0.7660 -1.1375 17 6 1.6369 -2.2204 -0.9727 18 8 1.0054 -2.5832 -0.0029 19 7 2.0180 -3.1180 -1.9031 20 6 1.6923 -4.4413 -1.7529 21 1 1.1299 -4.7643 -0.8893 22 6 2.0847 -5.3665 -2.7124 23 7 2.7686 -4.9734 -3.7634 24 14 1.6415 -7.1695 -2.5074 25 1 0.3286 -7.4327 -3.1493 26 1 2.6835 -8.0115 -3.1485 27 1 1.5603 -7.4980 -1.0615 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5016 2.1492 34 1 0.5472 2.0846 1.4265 35 1 1.7446 4.0417 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7213 5.9063 2.3423 38 1 -0.1931 4.3992 2.0957 39 1 0.2598 4.9064 3.7407 40 1 2.7807 6.5414 4.3149 41 1 1.4612 7.5135 6.2025 42 1 2.9305 6.8566 6.9602 43 1 1.2209 3.8507 8.0872 44 1 2.8286 4.5108 7.6857 45 1 0.7154 3.4412 5.7678 46 1 2.3584 2.8128 6.0373 47 1 1.5611 -0.3873 -2.0627 48 1 3.0797 -0.6611 -1.1755 49 1 2.5228 -2.8278 -2.6789 50 1 3.0428 -5.6194 -4.4330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755036504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = -88.469997 kcal Electronic energy + Delta-G solvation = -29083.625218 eV Core-core repulsion = 24918.712180 eV Total energy + Delta-G solvation = -4164.913038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71550 -39.23179 -38.60784 -36.90012 -35.80735 -34.36257 -33.83725 -31.98288 -31.60151 -31.19434 -28.02047 -27.33469 -27.18611 -25.69743 -24.66860 -24.34941 -22.99820 -20.87493 -20.52908 -19.10884 -18.70243 -17.80542 -17.64163 -16.92050 -16.76417 -16.01566 -15.78796 -15.62773 -15.48435 -15.19446 -14.80208 -14.60843 -14.34484 -14.13672 -13.91696 -13.59608 -13.41479 -13.32417 -13.27027 -13.09557 -13.00065 -12.71482 -12.21637 -12.03992 -11.96461 -11.90512 -11.63061 -11.45351 -11.32539 -11.21901 -11.18985 -10.89511 -10.59898 -10.54814 -10.36938 -10.19152 -9.92996 -9.47377 -9.44929 -9.01130 -8.40603 -7.94426 -7.80247 -6.38908 -3.79521 1.24226 2.23001 2.69913 3.19601 3.28039 3.34292 3.36146 3.94112 3.99485 4.06156 4.23729 4.28324 4.42775 4.66778 4.70862 4.76434 4.81178 4.89739 4.95338 4.99060 5.07437 5.14894 5.18461 5.22013 5.24106 5.28267 5.29551 5.37248 5.44965 5.48679 5.62797 5.73044 5.75462 5.76423 5.96667 6.01254 6.03518 6.07123 6.12192 6.30529 6.33921 6.56989 6.59195 6.98981 7.32565 7.45205 7.57939 7.80867 8.09683 8.65341 9.21219 9.57905 10.10115 10.78934 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.001694 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.266192 B =16521.963498 C =17001.961223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.114 3.886 6 N -0.610 5.610 7 C 0.077 3.923 8 C 0.553 3.447 9 O -0.527 6.527 10 C -0.135 4.135 11 C -0.160 4.160 12 C 0.091 3.909 13 O -0.377 6.377 14 C 0.060 3.940 15 C -0.111 4.111 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 26.738 14.516 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.168 4.168 5 C -0.008 4.008 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.340 3.660 9 O -0.403 6.403 10 C -0.138 4.138 11 C -0.179 4.179 12 C 0.014 3.986 13 O -0.296 6.296 14 C -0.016 4.016 15 C -0.149 4.149 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.681 25.899 15.440 30.271 hybrid contribution 0.122 -0.382 -1.613 1.663 sum -2.559 25.516 13.826 29.134 Atomic orbital electron populations 1.22553 0.86948 1.04343 0.98722 1.61520 1.08589 1.11400 1.42760 1.22028 1.00343 0.88867 0.95771 1.21911 1.01312 0.94457 0.99073 1.21516 1.02113 0.92960 0.84248 1.47862 1.20991 1.52802 1.12619 1.21835 0.85475 0.95920 1.03343 1.18613 0.84127 0.79158 0.84093 1.90852 1.22024 1.43346 1.84110 1.20865 1.02202 0.95335 0.95410 1.23355 0.99638 0.94863 1.00066 1.21476 0.95983 0.92919 0.88184 1.88136 1.47438 1.23022 1.70956 1.22685 0.99276 0.83697 0.95959 1.21009 1.02472 0.98258 0.93119 1.21865 1.00704 0.94146 0.91823 1.19751 0.85368 0.86682 0.85185 1.90478 1.43904 1.80160 1.31601 1.41872 1.49538 1.07356 1.21455 1.19699 1.32885 0.82318 1.07844 0.87936 1.25256 0.96867 1.00549 0.95339 1.69615 1.38152 1.35736 1.10896 0.85858 0.77966 0.81791 0.78666 1.20475 1.20944 1.19425 0.96918 0.88695 0.92231 0.95192 0.90728 0.90556 0.91688 0.90439 0.89503 0.92487 0.90813 0.90554 0.86063 0.87204 0.91337 0.87772 0.92284 0.89200 0.88939 0.93539 0.89399 0.77503 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.06 0.54 0.91 16 2 N -0.52 -9.01 4.50 -244.37 -1.10 -10.11 16 3 C 0.06 0.77 4.96 -3.82 -0.02 0.76 16 4 C -0.13 -1.53 5.46 -26.73 -0.15 -1.67 16 5 C 0.11 1.12 5.46 -4.04 -0.02 1.10 16 6 N -0.61 -5.76 2.87 -182.98 -0.53 -6.28 16 7 C 0.08 0.48 10.15 59.84 0.61 1.08 16 8 C 0.55 6.38 6.92 -12.67 -0.09 6.29 16 9 O -0.53 -8.32 16.66 5.27 0.09 -8.23 16 10 C -0.14 -1.19 3.80 -103.09 -0.39 -1.59 16 11 C -0.16 -1.10 9.26 -36.44 -0.34 -1.44 16 12 C 0.09 0.50 7.04 35.79 0.25 0.75 16 13 O -0.38 -2.86 10.83 -35.23 -0.38 -3.24 16 14 C 0.06 0.39 6.88 37.22 0.26 0.65 16 15 C -0.11 -0.86 6.08 -27.96 -0.17 -1.03 16 16 C 0.05 0.85 5.45 -4.98 -0.03 0.83 16 17 C 0.44 10.76 7.47 -10.98 -0.08 10.68 16 18 O -0.58 -15.86 13.91 5.55 0.08 -15.79 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 1.92 5.82 -51.93 -0.30 1.62 16 30 H 0.06 0.87 6.47 -51.92 -0.34 0.53 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 35 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.08 0.45 6.57 -51.93 -0.34 0.11 16 40 H 0.12 0.74 7.99 -52.49 -0.42 0.32 16 41 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 49 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 406.70 15.07 6.13 6.13 Total: -1.00 -35.07 406.70 -8.20 -43.27 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.26 Total: 7.49 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 0.13 Total: 9.23 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.96 Total: -55.16 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.22 Total: -27.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.07 -8.20 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.198 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds