Wall clock time and date at job start Tue Mar 31 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00032 * 2 1 4 4 C 1.53003 * 109.47331 * 66.04736 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.47032 * 180.02562 * 5 4 3 7 7 C 1.46495 * 119.99578 * 269.99713 * 6 5 4 8 8 C 1.34774 * 120.00212 * 89.99750 * 6 5 4 9 9 O 1.21612 * 119.99795 * 4.43490 * 8 6 5 10 10 C 1.47098 * 119.99990 * 184.71129 * 8 6 5 11 11 C 1.32088 * 118.87723 * 279.77953 * 10 8 6 12 12 C 1.50265 * 122.58105 * 180.14609 * 11 10 8 13 13 O 1.42896 * 110.14380 * 344.80572 * 12 11 10 14 14 C 1.43267 * 113.09980 * 50.32829 * 13 12 11 15 15 C 1.50420 * 118.87807 * 100.05049 * 10 8 6 16 16 C 1.46898 * 111.00207 * 236.04331 * 2 1 3 17 17 C 1.50700 * 109.46954 * 293.95650 * 16 2 1 18 18 O 1.21286 * 120.00032 * 359.97438 * 17 16 2 19 19 N 1.34778 * 119.99737 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99952 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99655 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99981 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99769 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47513 * 90.00588 * 24 22 20 26 26 H 1.48510 * 109.47308 * 210.00390 * 24 22 20 27 27 H 1.48502 * 109.47341 * 330.00335 * 24 22 20 28 28 H 1.08996 * 109.46824 * 59.99570 * 1 2 3 29 29 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46963 * 300.00071 * 1 2 3 31 31 H 1.09001 * 109.47177 * 306.04415 * 3 2 1 32 32 H 1.09003 * 109.47226 * 186.04356 * 3 2 1 33 33 H 1.08996 * 109.47386 * 60.00194 * 4 3 2 34 34 H 1.08998 * 109.46776 * 299.99477 * 4 3 2 35 35 H 1.08996 * 109.46995 * 59.99752 * 5 4 3 36 36 H 1.09002 * 109.46485 * 299.99781 * 5 4 3 37 37 H 1.09000 * 109.47600 * 274.19908 * 7 6 5 38 38 H 1.09001 * 109.47458 * 34.20585 * 7 6 5 39 39 H 1.09005 * 109.46904 * 154.20063 * 7 6 5 40 40 H 1.07996 * 118.70881 * 0.37138 * 11 10 8 41 41 H 1.08999 * 109.50243 * 224.50102 * 12 11 10 42 42 H 1.09001 * 109.08014 * 104.84304 * 12 11 10 43 43 H 1.09007 * 109.63663 * 171.47515 * 14 13 12 44 44 H 1.09000 * 109.64187 * 50.86098 * 14 13 12 45 45 H 1.09000 * 109.45579 * 283.35485 * 15 10 8 46 46 H 1.08998 * 109.45381 * 43.28689 * 15 10 8 47 47 H 1.09003 * 109.46693 * 53.95457 * 16 2 1 48 48 H 1.09001 * 109.47091 * 173.95217 * 16 2 1 49 49 H 0.97003 * 119.99904 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99984 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1793 3.4861 1.3180 6 7 1.8313 4.1428 2.5805 7 6 0.5745 4.8863 2.6972 8 6 2.6675 4.0629 3.6345 9 8 3.7466 3.5152 3.5143 10 6 2.2722 4.6329 4.9317 11 6 2.3972 5.9341 5.1214 12 6 2.0222 6.6031 6.4136 13 8 1.2207 5.7259 7.2074 14 6 1.7936 4.4212 7.3558 15 6 1.7453 3.7132 5.9990 16 6 1.9955 -0.7660 -1.1375 17 6 1.6369 -2.2204 -0.9727 18 8 1.0054 -2.5832 -0.0029 19 7 2.0180 -3.1180 -1.9031 20 6 1.6923 -4.4413 -1.7529 21 1 1.1299 -4.7643 -0.8893 22 6 2.0847 -5.3665 -2.7124 23 7 2.7686 -4.9734 -3.7634 24 14 1.6415 -7.1695 -2.5074 25 1 0.3286 -7.4327 -3.1493 26 1 2.6835 -8.0115 -3.1485 27 1 1.5603 -7.4980 -1.0615 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3444 -0.1082 33 1 2.0658 1.5016 2.1492 34 1 0.5472 2.0846 1.4265 35 1 1.7446 4.0417 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7213 5.9063 2.3423 38 1 -0.1931 4.3992 2.0957 39 1 0.2598 4.9064 3.7407 40 1 2.7807 6.5414 4.3149 41 1 1.4612 7.5135 6.2025 42 1 2.9305 6.8566 6.9602 43 1 1.2209 3.8507 8.0872 44 1 2.8286 4.5108 7.6857 45 1 0.7154 3.4412 5.7678 46 1 2.3584 2.8128 6.0373 47 1 1.5611 -0.3873 -2.0627 48 1 3.0797 -0.6611 -1.1755 49 1 2.5228 -2.8278 -2.6789 50 1 3.0428 -5.6194 -4.4330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755036504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:55 Heat of formation + Delta-G solvation = -114.600309 kcal Electronic energy + Delta-G solvation = -29084.758314 eV Core-core repulsion = 24918.712180 eV Total energy + Delta-G solvation = -4166.046133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.45301 -40.40278 -39.81760 -38.26792 -36.79907 -35.89133 -34.99339 -33.31323 -32.91555 -32.12725 -29.47997 -28.23910 -27.85676 -26.97985 -26.07170 -24.91725 -24.15650 -21.97808 -21.31444 -20.95996 -19.85949 -19.35690 -18.27154 -17.91879 -17.51489 -17.40237 -16.78815 -16.65476 -16.46522 -16.23279 -16.13024 -15.84980 -15.76354 -15.27441 -15.06241 -14.76858 -14.66751 -14.44150 -14.03967 -13.76552 -13.67259 -13.55758 -13.49463 -13.35111 -13.08277 -12.93772 -12.87015 -12.73894 -12.55816 -12.52169 -12.40381 -12.36840 -12.12653 -11.90975 -11.56401 -11.46300 -11.27199 -10.58353 -10.29823 -10.05738 -10.00590 -9.78240 -9.18743 -8.46885 -5.95598 0.65670 1.37174 1.39015 1.40733 1.53721 1.98614 2.04873 2.28288 2.78365 2.89760 3.19718 3.39913 3.43138 3.69793 3.88829 3.90989 4.05266 4.13482 4.19204 4.23399 4.26589 4.34816 4.38146 4.43126 4.45791 4.51283 4.52542 4.56466 4.58929 4.64525 4.68224 4.71409 4.76255 4.78932 4.85410 4.92875 5.07927 5.12425 5.19613 5.26508 5.40572 5.45988 5.49878 5.88547 6.07729 6.09726 6.22639 6.25149 6.60671 6.99288 7.12703 7.56062 8.12316 8.70546 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.001694 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.266192 B =16521.963498 C =17001.961223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.118 3.882 6 N -0.607 5.607 7 C 0.073 3.927 8 C 0.547 3.453 9 O -0.583 6.583 10 C -0.161 4.161 11 C -0.137 4.137 12 C 0.086 3.914 13 O -0.390 6.390 14 C 0.063 3.937 15 C -0.109 4.109 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 29.010 14.168 32.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.066 4.066 4 C -0.156 4.156 5 C -0.005 4.005 6 N -0.338 5.338 7 C -0.069 4.069 8 C 0.336 3.664 9 O -0.464 6.464 10 C -0.164 4.164 11 C -0.156 4.156 12 C 0.010 3.990 13 O -0.309 6.309 14 C -0.014 4.014 15 C -0.147 4.147 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.100 0.900 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.490 28.219 15.069 32.181 hybrid contribution 0.345 -0.988 -1.485 1.816 sum -3.145 27.232 13.585 30.594 Atomic orbital electron populations 1.22410 0.86731 1.02113 1.00631 1.61457 1.09087 1.13895 1.42582 1.22076 1.00444 0.86837 0.97243 1.21777 1.01529 0.95154 0.97101 1.21468 1.01236 0.92223 0.85575 1.47993 1.21645 1.52157 1.11960 1.22062 0.84074 0.96670 1.04047 1.19123 0.83543 0.78412 0.85312 1.90812 1.24446 1.46023 1.85086 1.20776 1.04860 0.96242 0.94564 1.23606 0.97072 0.94134 1.00827 1.21745 0.96858 0.93140 0.87219 1.88121 1.48179 1.23357 1.71258 1.22725 0.99740 0.83569 0.95322 1.20983 1.02121 0.97734 0.93834 1.21729 1.01919 0.90214 0.93425 1.20804 0.83717 0.88841 0.83875 1.90456 1.45236 1.81473 1.32991 1.41939 1.50096 1.07054 1.22132 1.19655 1.34486 0.84078 1.08038 0.90405 1.26043 0.96255 1.04361 0.94675 1.69675 1.38098 1.37202 1.11166 0.84921 0.78296 0.76745 0.78317 1.19494 1.19505 1.19945 0.94752 0.92927 0.90467 0.92362 0.90642 0.94222 0.90813 0.87086 0.91309 0.90403 0.89586 0.90268 0.85099 0.84663 0.90023 0.86384 0.92031 0.89052 0.90633 0.91110 0.87656 0.77023 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.96 127.69 1.14 2.08 16 2 N -0.55 -18.49 4.50 -927.05 -4.17 -22.66 16 3 C 0.06 1.51 4.96 86.30 0.43 1.94 16 4 C -0.12 -2.65 5.46 30.60 0.17 -2.49 16 5 C 0.12 2.15 5.46 86.38 0.47 2.62 16 6 N -0.61 -10.76 2.87 -851.07 -2.45 -13.20 16 7 C 0.07 0.71 10.15 127.77 1.30 2.01 16 8 C 0.55 12.77 6.92 86.57 0.60 13.37 16 9 O -0.58 -19.36 16.66 -4.07 -0.07 -19.43 16 10 C -0.16 -2.78 3.80 -18.59 -0.07 -2.85 16 11 C -0.14 -1.65 9.26 24.59 0.23 -1.42 16 12 C 0.09 0.73 7.04 71.10 0.50 1.23 16 13 O -0.39 -5.16 10.83 -148.98 -1.61 -6.78 16 14 C 0.06 0.76 6.88 72.02 0.50 1.25 16 15 C -0.11 -1.71 6.08 29.80 0.18 -1.53 16 16 C 0.06 2.11 5.45 85.56 0.47 2.58 16 17 C 0.44 21.73 7.47 87.66 0.66 22.38 16 18 O -0.62 -35.10 13.91 -3.05 -0.04 -35.14 16 19 N -0.57 -30.33 5.29 -306.99 -1.62 -31.95 16 20 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 24 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 2.17 5.82 -2.39 -0.01 2.15 16 30 H 0.08 2.16 6.47 -2.38 -0.02 2.15 16 31 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.53 6.55 -2.39 -0.02 1.52 16 35 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 36 H 0.07 1.54 7.36 -2.39 -0.02 1.52 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 39 H 0.08 0.76 6.57 -2.38 -0.02 0.75 16 40 H 0.13 1.29 7.99 -2.91 -0.02 1.27 16 41 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 48 H 0.11 3.45 7.93 -2.39 -0.02 3.43 16 49 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 50 H 0.28 14.21 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -79.27 406.70 0.40 -78.88 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.21 Total: 32.30 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 7.84 Total: 22.37 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.96 Total: -117.96 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -1.72 Total: -61.35 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.27 0.40 -78.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.725 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds