Wall clock time and date at job start Tue Mar 31 2020 22:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99982 * 2 1 4 4 O 1.42897 * 109.47521 * 134.99555 * 3 2 1 5 5 C 1.42897 * 114.00505 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47055 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00485 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99660 * 180.02562 * 6 5 4 9 9 C 1.47428 * 125.64788 * 354.83747 * 8 6 5 10 10 C 1.54906 * 104.83201 * 155.91543 * 9 8 6 11 11 C 1.55156 * 101.58360 * 37.00546 * 10 9 8 12 12 C 1.47483 * 125.59279 * 174.86517 * 8 6 5 13 13 H 1.09004 * 109.96499 * 300.32876 * 12 8 6 14 14 C 1.53002 * 110.03514 * 61.63708 * 12 8 6 15 15 N 1.46894 * 109.47067 * 181.76582 * 14 12 8 16 16 C 1.46904 * 111.00080 * 72.07316 * 15 14 12 17 17 C 1.46906 * 110.99879 * 196.02460 * 15 14 12 18 18 C 1.50696 * 109.46979 * 170.00178 * 17 15 14 19 19 O 1.21293 * 120.00610 * 359.97438 * 18 17 15 20 20 N 1.34779 * 120.00032 * 180.02562 * 18 17 15 21 21 C 1.37094 * 120.00180 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00425 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00261 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00343 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47271 * 89.99590 * 25 23 21 27 27 H 1.48505 * 109.47275 * 209.99417 * 25 23 21 28 28 H 1.48504 * 109.47301 * 329.99590 * 25 23 21 29 29 H 1.07995 * 119.99862 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99958 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46752 * 14.99441 * 3 2 1 33 33 H 1.09000 * 109.46992 * 254.99503 * 3 2 1 34 34 H 1.09005 * 109.46540 * 60.00111 * 5 4 3 35 35 H 1.08998 * 109.46605 * 300.00346 * 5 4 3 36 36 H 1.08998 * 110.36819 * 37.07168 * 9 8 6 37 37 H 1.09005 * 110.36329 * 274.75100 * 9 8 6 38 38 H 1.09000 * 111.00417 * 278.93635 * 10 9 8 39 39 H 1.08992 * 111.00740 * 155.08360 * 10 9 8 40 40 H 1.09001 * 110.71927 * 82.86357 * 11 10 9 41 41 H 1.08998 * 110.72608 * 205.96113 * 11 10 9 42 42 H 1.09002 * 109.47151 * 301.77034 * 14 12 8 43 43 H 1.09003 * 109.46653 * 61.76578 * 14 12 8 44 44 H 1.08989 * 109.47094 * 54.76531 * 16 15 14 45 45 H 1.09002 * 109.46840 * 174.76875 * 16 15 14 46 46 H 1.09000 * 109.46821 * 294.76142 * 16 15 14 47 47 H 1.09002 * 109.47066 * 289.99769 * 17 15 14 48 48 H 1.08992 * 109.47180 * 50.00178 * 17 15 14 49 49 H 0.97002 * 119.99964 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99901 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0321 6 6 4.9938 2.2570 2.0622 7 8 5.0889 1.2109 2.6684 8 7 5.8589 3.2605 2.3099 9 6 5.9262 4.5376 1.5764 10 6 6.5810 5.5307 2.5686 11 6 7.6183 4.6220 3.2799 12 6 6.8949 3.2612 3.3596 13 1 6.4319 3.1443 4.3395 14 6 7.8915 2.1268 3.1132 15 7 8.8927 2.1125 4.1880 16 6 8.3085 1.6265 5.4453 17 6 10.0631 1.3107 3.8067 18 6 11.1630 1.5160 4.8161 19 8 10.9894 2.2576 5.7601 20 7 12.3402 0.8763 4.6695 21 6 13.3407 1.0626 5.5880 22 1 13.1858 1.7223 6.4290 23 6 14.5546 0.4035 5.4366 24 7 14.7433 -0.3988 4.4131 25 14 15.9180 0.6579 6.6878 26 1 15.7897 -0.3492 7.7715 27 1 17.2363 0.5030 6.0217 28 1 15.8122 2.0221 7.2648 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4756 1.4867 -0.9926 34 1 3.2688 3.2697 1.3192 35 1 4.3587 2.6396 0.0608 36 1 4.9248 4.8742 1.3081 37 1 6.5431 4.4305 0.6842 38 1 5.8478 5.9154 3.2774 39 1 7.0740 6.3452 2.0380 40 1 8.5296 4.5402 2.6875 41 1 7.8413 4.9992 4.2779 42 1 7.3614 1.1744 3.0977 43 1 8.3886 2.2815 2.1556 44 1 7.8510 0.6511 5.2801 45 1 9.0909 1.5379 6.1990 46 1 7.5504 2.3299 5.7895 47 1 9.7877 0.2564 3.7788 48 1 10.4112 1.6216 2.8218 49 1 12.4793 0.2835 3.9144 50 1 15.5905 -0.8593 4.3075 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755188190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:11 Heat of formation + Delta-G solvation = -100.633753 kcal Electronic energy + Delta-G solvation = -29467.835052 eV Core-core repulsion = 25302.394554 eV Total energy + Delta-G solvation = -4165.440498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.38829 -40.34970 -39.29186 -38.29103 -37.41326 -35.85084 -34.78038 -33.28792 -32.86393 -31.54157 -29.43532 -29.04218 -27.46034 -26.52565 -26.40699 -24.28993 -23.01213 -21.76233 -21.01244 -20.98918 -20.00868 -19.80019 -18.46504 -18.04699 -17.53289 -17.38081 -17.04836 -16.67464 -16.62932 -16.34898 -16.13772 -15.63386 -15.46836 -15.39220 -15.14382 -14.92577 -14.38875 -14.17594 -14.08303 -13.80565 -13.73863 -13.51026 -13.31370 -13.18561 -13.06310 -13.03462 -12.77271 -12.63154 -12.41361 -12.39927 -12.11036 -12.04673 -11.88513 -11.79645 -11.55164 -11.45855 -11.01151 -10.84820 -10.32810 -10.26788 -10.00245 -9.73604 -9.28438 -8.45973 -5.94818 1.16855 1.38221 1.41704 1.51176 1.54884 1.68360 2.04400 2.28712 2.70880 3.01276 3.20267 3.38192 3.48257 3.67699 3.82019 3.90135 4.05060 4.13836 4.17029 4.19928 4.23458 4.25925 4.28975 4.33117 4.40929 4.45427 4.48191 4.51530 4.59866 4.61865 4.66818 4.73683 4.85616 4.97365 5.02975 5.05731 5.10761 5.19826 5.34216 5.41472 5.44371 5.64982 5.69360 5.81583 6.00810 6.07189 6.12126 6.49394 6.60450 7.10489 7.12904 7.55864 8.11315 8.71591 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.001946 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.542217 B =14385.861385 C =15328.071805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.180 4.180 3 C 0.085 3.915 4 O -0.401 6.401 5 C 0.055 3.945 6 C 0.517 3.483 7 O -0.575 6.575 8 N -0.613 5.613 9 C 0.093 3.907 10 C -0.125 4.125 11 C -0.111 4.111 12 C 0.147 3.853 13 H 0.057 0.943 14 C 0.053 3.947 15 N -0.518 5.518 16 C 0.032 3.968 17 C 0.057 3.943 18 C 0.445 3.555 19 O -0.609 6.609 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.082 0.918 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.111 0.889 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.929 10.880 -15.003 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.010 3.990 4 O -0.320 6.320 5 C -0.024 4.024 6 C 0.306 3.694 7 O -0.454 6.454 8 N -0.348 5.348 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.149 4.149 12 C 0.043 3.957 13 H 0.075 0.925 14 C -0.076 4.076 15 N -0.242 5.242 16 C -0.116 4.116 17 C -0.074 4.074 18 C 0.233 3.767 19 O -0.495 6.495 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.129 0.871 49 H 0.228 0.772 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.714 10.969 -13.964 31.249 hybrid contribution 0.771 -1.526 0.223 1.724 sum -24.942 9.443 -13.741 30.002 Atomic orbital electron populations 1.24058 0.94965 1.03538 0.97719 1.22805 0.96401 0.98167 1.02431 1.21792 0.88231 0.96523 0.92448 1.88010 1.45591 1.36564 1.61847 1.22300 0.92279 0.89284 0.98571 1.20729 0.82443 0.82257 0.83954 1.90727 1.73679 1.28506 1.52461 1.48742 1.32803 1.18013 1.35280 1.22739 1.03601 0.81112 0.95381 1.22836 0.97866 0.97371 0.98217 1.22484 0.98235 0.91839 1.02332 1.21498 0.87254 0.96369 0.90581 0.92456 1.22443 0.92630 0.98140 0.94389 1.61509 1.06129 1.53084 1.03494 1.22381 0.99402 0.97336 0.92479 1.21749 0.90426 0.96844 0.98424 1.20572 0.84211 0.83503 0.88458 1.90459 1.81878 1.41696 1.35492 1.41934 1.12030 1.41755 1.25488 1.19681 0.93244 1.27026 1.06168 0.90112 1.26065 1.00348 0.95534 0.99452 1.69686 1.26979 1.29398 1.30237 0.84902 0.76954 0.78680 0.77630 1.19812 1.19522 1.19592 0.86971 0.86710 0.88009 0.90530 0.90384 0.87027 0.87189 0.87254 0.89416 0.90035 0.87378 0.90614 0.90754 0.95518 0.89963 0.96633 0.91898 0.90847 0.92626 0.87094 0.77155 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 14.31 67.78 0.97 -0.76 16 2 C -0.18 -2.63 9.89 25.64 0.25 -2.38 16 3 C 0.09 1.10 6.35 71.24 0.45 1.55 16 4 O -0.40 -8.55 9.86 -129.94 -1.28 -9.83 16 5 C 0.05 0.80 5.35 71.23 0.38 1.18 16 6 C 0.52 12.48 7.75 87.65 0.68 13.16 16 7 O -0.57 -20.70 15.34 16.02 0.25 -20.45 16 8 N -0.61 -11.99 3.08 -786.95 -2.43 -14.41 16 9 C 0.09 0.87 6.74 86.85 0.59 1.46 16 10 C -0.13 -1.32 7.09 31.98 0.23 -1.09 16 11 C -0.11 -2.19 6.20 31.78 0.20 -1.99 16 12 C 0.15 3.62 2.94 45.25 0.13 3.75 16 13 H 0.06 1.64 6.80 -2.38 -0.02 1.63 16 14 C 0.05 1.58 4.34 86.30 0.37 1.95 16 15 N -0.52 -18.48 4.18 -927.06 -3.87 -22.35 16 16 C 0.03 1.20 9.00 127.69 1.15 2.35 16 17 C 0.06 2.17 5.44 85.55 0.47 2.64 16 18 C 0.45 22.02 7.42 87.66 0.65 22.67 16 19 O -0.61 -34.16 13.96 -3.07 -0.04 -34.20 16 20 N -0.57 -30.46 5.29 -306.99 -1.62 -32.08 16 21 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 22 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 25 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 30 H 0.11 0.78 7.90 -2.91 -0.02 0.76 16 31 H 0.10 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.08 0.63 7.86 -2.39 -0.02 0.61 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.87 7.96 -2.38 -0.02 0.85 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.33 7.47 -2.39 -0.02 0.31 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 0.94 6.47 -2.39 -0.02 0.92 16 43 H 0.08 2.23 7.76 -2.39 -0.02 2.22 16 44 H 0.02 0.56 8.01 -2.39 -0.02 0.54 16 45 H 0.06 2.75 5.79 -2.39 -0.01 2.74 16 46 H 0.07 2.47 6.87 -2.39 -0.02 2.45 16 47 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 48 H 0.11 3.69 7.86 -2.39 -0.02 3.67 16 49 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 50 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -80.28 408.65 1.31 -78.97 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.20 Total: 33.42 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 7.80 Total: 25.78 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -7.64 Total: -119.35 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -1.08 Total: -64.48 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -80.28 1.31 -78.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755188190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.663 kcal (2) G-P(sol) polarization free energy of solvation -80.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds