Wall clock time and date at job start Tue Mar 31 2020 22:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00139 * 2 1 4 4 O 1.21282 * 120.00545 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99697 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47270 * 179.97438 * 5 3 2 7 7 O 1.42907 * 112.84916 * 53.80292 * 6 5 3 8 8 C 1.53785 * 113.61428 * 282.50302 * 6 5 3 9 9 C 1.53780 * 87.07858 * 220.01758 * 8 6 5 10 10 C 1.53776 * 113.61844 * 184.99998 * 6 5 3 11 11 C 1.46500 * 120.00241 * 180.02562 * 2 1 3 12 12 C 1.53785 * 113.68813 * 320.93416 * 11 2 1 13 13 C 1.53779 * 87.08093 * 139.99098 * 12 11 2 14 14 N 1.46900 * 113.69049 * 220.00567 * 13 12 11 15 15 C 1.46895 * 111.00037 * 252.53571 * 14 13 12 16 16 C 1.50701 * 109.47160 * 179.97438 * 15 14 13 17 17 O 1.21287 * 119.99828 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00055 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99982 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99773 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99916 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00032 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00154 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46845 * 89.99581 * 23 21 19 25 25 H 1.48494 * 109.47102 * 209.99482 * 23 21 19 26 26 H 1.48503 * 109.46987 * 329.99832 * 23 21 19 27 27 C 1.53781 * 113.61339 * 58.46924 * 11 2 1 28 28 H 1.09006 * 109.46781 * 269.99812 * 1 2 3 29 29 H 1.09007 * 109.47581 * 29.99733 * 1 2 3 30 30 H 1.09004 * 109.47550 * 149.99899 * 1 2 3 31 31 H 1.08998 * 109.47439 * 300.00253 * 5 3 2 32 32 H 1.08997 * 109.47476 * 60.00058 * 5 3 2 33 33 H 0.96704 * 113.99561 * 309.67338 * 7 6 5 34 34 H 1.09003 * 113.61011 * 334.55712 * 8 6 5 35 35 H 1.08998 * 113.61773 * 105.46665 * 8 6 5 36 36 H 1.09009 * 113.60870 * 270.88154 * 9 8 6 37 37 H 1.09000 * 113.61926 * 139.98067 * 9 8 6 38 38 H 1.09000 * 113.61677 * 254.53119 * 10 6 5 39 39 H 1.09001 * 113.61242 * 25.43535 * 10 6 5 40 40 H 1.09002 * 112.85221 * 189.66395 * 11 2 1 41 41 H 1.09003 * 113.60734 * 254.54218 * 12 11 2 42 42 H 1.08996 * 113.61146 * 25.43716 * 12 11 2 43 43 H 1.09003 * 113.61186 * 89.11185 * 13 12 11 44 44 H 1.00901 * 111.00069 * 128.58311 * 14 13 12 45 45 H 1.08999 * 109.47315 * 300.00403 * 15 14 13 46 46 H 1.09002 * 109.47268 * 59.99916 * 15 14 13 47 47 H 0.97005 * 120.00061 * 0.02562 * 18 16 15 48 48 H 0.96997 * 120.00063 * 180.02562 * 22 21 19 49 49 H 1.09005 * 113.61302 * 334.48230 * 27 11 2 50 50 H 1.08993 * 113.62030 * 105.39076 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 8 3.3313 3.5522 -1.0617 8 6 3.0117 3.9047 1.3769 9 6 2.8693 5.4030 1.0613 10 6 1.7130 5.0156 0.1245 11 6 2.1975 -1.2687 -0.0006 12 6 1.5595 -2.3509 0.8865 13 6 1.9096 -3.3559 -0.2236 14 7 0.8616 -4.3563 -0.4660 15 6 1.2655 -5.6749 0.0400 16 6 0.1677 -6.6727 -0.2254 17 8 -0.8508 -6.3200 -0.7817 18 7 0.3180 -7.9570 0.1546 19 6 -0.6810 -8.8646 -0.0864 20 1 -1.5882 -8.5504 -0.5810 21 6 -0.5258 -10.1887 0.3049 22 7 -1.4830 -11.0587 0.0735 23 14 1.0437 -10.7323 1.1598 24 1 0.8869 -10.5764 2.6282 25 1 1.3140 -12.1568 0.8393 26 1 2.1777 -9.8957 0.6915 27 6 1.8674 -2.1701 -1.2020 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 0.7583 2.5303 -0.8891 32 1 0.7590 2.5299 0.8908 33 1 3.7709 2.6935 -1.1297 34 1 2.3952 3.5742 2.2129 35 1 4.0465 3.5712 1.4548 36 1 3.7303 5.8234 0.5413 37 1 2.5565 6.0017 1.9167 38 1 1.6993 5.5789 -0.8085 39 1 0.7415 4.9887 0.6182 40 1 3.2667 -1.1402 0.1681 41 1 2.0976 -2.5246 1.8183 42 1 0.4877 -2.2187 1.0338 43 1 2.9001 -3.7979 -0.1159 44 1 0.6249 -4.4020 -1.4458 45 1 2.1771 -5.9943 -0.4651 46 1 1.4475 -5.6123 1.1129 47 1 1.1327 -8.2391 0.5992 48 1 -1.3749 -11.9831 0.3470 49 1 0.8796 -1.9885 -1.6256 50 1 2.6538 -2.1980 -1.9561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755856740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:30 Heat of formation + Delta-G solvation = -65.638841 kcal Electronic energy + Delta-G solvation = -29212.111085 eV Core-core repulsion = 25048.188081 eV Total energy + Delta-G solvation = -4163.923005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07866 -39.84893 -38.62645 -38.07245 -35.48732 -34.68969 -34.09637 -33.15969 -31.67586 -30.61148 -27.61763 -26.95775 -26.10825 -25.87675 -24.73666 -23.79097 -22.50468 -20.02307 -19.96653 -19.50431 -19.21164 -18.32097 -17.69715 -16.87828 -16.62669 -16.22113 -15.91926 -15.71844 -15.40497 -15.25373 -15.14445 -14.77085 -14.33773 -14.06596 -13.82779 -13.52784 -13.28131 -13.21475 -13.03703 -12.75747 -12.68803 -12.56498 -12.50177 -12.19643 -12.10872 -11.91940 -11.88472 -11.55417 -11.35490 -11.21875 -11.16138 -11.00748 -10.79899 -10.71037 -10.61769 -10.01138 -9.98366 -9.97360 -9.60116 -8.97943 -8.62177 -8.24623 -8.19188 -6.33751 -3.85329 2.16706 2.57327 3.00292 3.04906 3.13188 3.70881 3.74565 3.95816 4.07003 4.12002 4.17600 4.26417 4.31896 4.40170 4.46086 4.57458 4.64829 4.72264 4.79159 4.86937 4.94029 5.01092 5.15128 5.18999 5.22969 5.26981 5.30780 5.36990 5.38840 5.54447 5.55433 5.58338 5.61549 5.69478 5.72445 5.77910 5.82410 5.87103 5.88024 5.98650 6.03417 6.26268 6.97304 7.09897 7.45562 7.50666 7.55615 7.80160 8.11603 8.56858 8.92107 9.39660 9.79544 10.79316 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037331 B = 0.001639 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.867415 B =17075.714265 C =17326.392985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.598 5.598 3 C 0.518 3.482 4 O -0.547 6.547 5 C -0.163 4.163 6 C 0.128 3.872 7 O -0.549 6.549 8 C -0.162 4.162 9 C -0.135 4.135 10 C -0.128 4.128 11 C 0.118 3.882 12 C -0.135 4.135 13 C 0.063 3.937 14 N -0.654 5.654 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.566 6.566 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C -0.153 4.153 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.389 0.611 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.353 0.647 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.094 0.906 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 28.923 2.561 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.329 5.329 3 C 0.308 3.692 4 O -0.427 6.427 5 C -0.203 4.203 6 C 0.086 3.914 7 O -0.361 6.361 8 C -0.199 4.199 9 C -0.173 4.173 10 C -0.166 4.166 11 C 0.014 3.986 12 C -0.174 4.174 13 C -0.049 4.049 14 N -0.287 5.287 15 C -0.086 4.086 16 C 0.235 3.765 17 O -0.448 6.448 18 N -0.230 5.230 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.173 0.827 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.439 29.662 2.650 30.953 hybrid contribution 1.840 -1.717 0.213 2.526 sum 10.279 27.945 2.863 29.913 Atomic orbital electron populations 1.21901 0.78961 1.03933 1.02517 1.47841 1.07225 1.05671 1.72163 1.20710 0.87974 0.85376 0.75164 1.90537 1.14091 1.87130 1.50918 1.22404 1.00130 0.92481 1.05271 1.21816 0.88739 0.92815 0.88076 1.86342 1.56780 1.41676 1.51275 1.23573 1.02458 0.96640 0.97258 1.22746 0.98852 0.96386 0.99286 1.23062 0.98162 0.94645 1.00700 1.22531 0.97776 0.80941 0.97331 1.23542 1.02472 0.93838 0.97541 1.22790 0.94167 0.91129 0.96773 1.60187 1.38810 1.05078 1.24583 1.21777 0.96135 0.89438 1.01257 1.19712 0.89183 0.82783 0.84809 1.90559 1.30232 1.78450 1.45543 1.42214 1.18043 1.08364 1.54332 1.19432 0.98450 0.88428 1.37169 0.86286 1.25039 0.97635 0.95644 0.97798 1.69618 1.32332 1.03826 1.46288 0.86669 0.82960 0.79244 0.80491 1.19586 1.20166 1.19541 1.23700 1.03071 0.95285 0.97154 0.91998 0.90880 0.89727 0.87957 0.87702 0.75581 0.89875 0.90591 0.89819 0.91376 0.90455 0.88874 0.86258 0.91213 0.88411 0.90688 0.82686 0.93662 0.89478 0.79681 0.91592 0.88722 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 8.85 59.84 0.53 0.95 16 2 N -0.60 -4.95 3.09 -173.00 -0.53 -5.48 16 3 C 0.52 4.72 7.44 -10.98 -0.08 4.64 16 4 O -0.55 -6.47 13.06 -14.26 -0.19 -6.66 16 5 C -0.16 -1.06 3.90 -27.88 -0.11 -1.17 16 6 C 0.13 1.04 1.10 -89.81 -0.10 0.94 16 7 O -0.55 -5.88 13.39 -55.05 -0.74 -6.62 16 8 C -0.16 -1.27 7.17 -25.92 -0.19 -1.46 16 9 C -0.14 -0.93 8.02 -25.92 -0.21 -1.14 16 10 C -0.13 -0.83 7.47 -25.92 -0.19 -1.02 16 11 C 0.12 1.09 4.21 -67.12 -0.28 0.80 16 12 C -0.13 -1.32 7.33 -25.92 -0.19 -1.51 16 13 C 0.06 0.67 4.14 -66.90 -0.28 0.39 16 14 N -0.65 -9.34 6.19 -107.13 -0.66 -10.00 16 15 C 0.05 0.74 6.01 -4.98 -0.03 0.71 16 16 C 0.45 9.96 7.82 -10.98 -0.09 9.87 16 17 O -0.57 -14.85 15.78 5.55 0.09 -14.76 16 18 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 19 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.53 13.96 55.50 0.77 -24.76 16 23 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C -0.15 -1.42 7.18 -25.92 -0.19 -1.60 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.30 6.44 -51.92 -0.33 -0.03 16 30 H 0.08 0.58 6.33 -51.93 -0.33 0.25 16 31 H 0.10 0.55 7.40 -51.93 -0.38 0.17 16 32 H 0.10 0.48 8.01 -51.93 -0.42 0.07 16 33 H 0.39 4.21 6.19 45.56 0.28 4.50 16 34 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.12 1.21 7.21 -51.93 -0.37 0.84 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.02 6.82 -51.93 -0.35 0.66 16 43 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 44 H 0.35 5.26 8.25 -39.29 -0.32 4.93 16 45 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.09 0.89 6.81 -51.93 -0.35 0.54 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -33.73 397.51 -9.11 -42.84 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -7.43 Total: 16.18 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.65 Total: 2.72 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.48 Total: -54.15 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.84 Total: -28.04 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.73 -9.11 -42.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755856740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.796 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds