Wall clock time and date at job start Wed Apr 1 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47071 * 2 1 4 4 C 1.53000 * 109.47441 * 119.99818 * 2 1 3 5 5 C 1.50702 * 109.47462 * 184.99933 * 4 2 1 6 6 O 1.20825 * 119.99804 * 0.02562 * 5 4 2 7 7 O 1.34224 * 120.00030 * 180.02562 * 5 4 2 8 8 C 1.45203 * 117.00016 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47189 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47404 * 300.00257 * 9 8 7 11 11 C 1.53008 * 109.46993 * 60.00249 * 9 8 7 12 12 C 1.50697 * 109.47009 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00094 * 356.86533 * 12 9 8 14 14 C 1.37875 * 119.99920 * 176.86821 * 12 9 8 15 15 N 1.31517 * 120.00313 * 5.81371 * 14 12 9 16 16 Si 1.86802 * 120.00081 * 185.81987 * 14 12 9 17 17 H 1.48496 * 109.47392 * 85.02286 * 16 14 12 18 18 H 1.48496 * 109.47131 * 205.02223 * 16 14 12 19 19 H 1.48499 * 109.47130 * 325.01999 * 16 14 12 20 20 N 1.46495 * 109.47411 * 240.00056 * 2 1 3 21 21 C 1.34775 * 119.99921 * 84.99630 * 20 2 1 22 22 O 1.21280 * 120.00094 * 0.02562 * 21 20 2 23 23 C 1.50709 * 120.00193 * 180.02562 * 21 20 2 24 24 C 1.52994 * 109.46854 * 300.00441 * 23 21 20 25 25 C 1.53003 * 109.47235 * 179.97438 * 24 23 21 26 26 C 1.53001 * 109.47133 * 59.99229 * 25 24 23 27 27 C 1.53003 * 109.47212 * 300.00802 * 26 25 24 28 28 C 1.52996 * 109.47537 * 60.00020 * 27 26 25 29 29 H 1.09003 * 109.47359 * 300.00013 * 1 2 3 30 30 H 1.08997 * 109.47749 * 59.99791 * 1 2 3 31 31 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46814 * 64.99778 * 4 2 1 33 33 H 1.08996 * 109.47274 * 305.00360 * 4 2 1 34 34 H 1.08992 * 109.46941 * 300.00121 * 8 7 5 35 35 H 1.09007 * 109.46963 * 59.99841 * 8 7 5 36 36 H 1.08998 * 109.47149 * 53.82410 * 10 9 8 37 37 H 1.08999 * 109.47533 * 173.82545 * 10 9 8 38 38 H 1.09004 * 109.47339 * 293.82588 * 10 9 8 39 39 H 1.08992 * 109.47056 * 59.99530 * 11 9 8 40 40 H 1.08995 * 109.47027 * 180.02562 * 11 9 8 41 41 H 1.08999 * 109.46859 * 299.99785 * 11 9 8 42 42 H 0.96998 * 120.00209 * 180.02562 * 15 14 12 43 43 H 0.96999 * 120.00242 * 265.00538 * 20 2 1 44 44 H 1.09001 * 109.46441 * 59.99956 * 23 21 20 45 45 H 1.09009 * 109.46964 * 299.99350 * 24 23 21 46 46 H 1.09003 * 109.47820 * 59.99562 * 24 23 21 47 47 H 1.08998 * 109.46557 * 300.00081 * 25 24 23 48 48 H 1.08998 * 109.47348 * 179.97438 * 25 24 23 49 49 H 1.08994 * 109.47196 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.46575 * 60.00574 * 26 25 24 51 51 H 1.08999 * 109.46746 * 299.99344 * 27 26 25 52 52 H 1.09002 * 109.46829 * 179.97438 * 27 26 25 53 53 H 1.08998 * 109.47158 * 180.02562 * 28 27 26 54 54 H 1.08998 * 109.47027 * 59.99463 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1427 -0.0226 0.4478 7 8 4.2122 -1.1781 2.3301 8 6 5.6572 -1.0354 2.3268 9 6 6.2417 -1.7364 3.5547 10 6 5.6696 -1.1027 4.8243 11 6 5.8759 -3.2216 3.5165 12 6 7.7414 -1.5877 3.5516 13 1 8.2331 -1.0914 2.7280 14 6 8.4856 -2.0853 4.6001 15 7 7.9017 -2.7888 5.5455 16 14 10.3235 -1.7601 4.6781 17 1 10.5664 -0.4424 5.3182 18 1 10.9814 -2.8264 5.4752 19 1 10.8837 -1.7532 3.3029 20 7 2.0183 -0.6906 -1.1961 21 6 2.1470 -0.0182 -2.3571 22 8 1.8589 1.1586 -2.4114 23 6 2.6489 -0.7287 -3.5878 24 6 4.0512 -1.2797 -3.3222 25 6 4.5606 -2.0016 -4.5714 26 6 4.6120 -1.0189 -5.7430 27 6 3.2095 -0.4679 -6.0084 28 6 2.7002 0.2540 -4.7593 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 6.0647 -1.4865 1.4222 35 1 5.9179 0.0227 2.3544 36 1 4.5807 -1.1116 4.7759 37 1 5.9992 -1.6706 5.6943 38 1 6.0211 -0.0742 4.9073 39 1 6.2834 -3.6730 2.6121 40 1 6.2919 -3.7208 4.3916 41 1 4.7912 -3.3287 3.5190 42 1 8.4252 -3.1385 6.2834 43 1 2.2490 -1.6317 -1.1526 44 1 1.9759 -1.5505 -3.8325 45 1 4.7242 -0.4578 -3.0774 46 1 4.0146 -1.9801 -2.4878 47 1 3.8876 -2.8234 -4.8158 48 1 5.5599 -2.3937 -4.3824 49 1 4.9752 -1.5330 -6.6328 50 1 5.2850 -0.1970 -5.4985 51 1 2.5365 -1.2898 -6.2529 52 1 3.2462 0.2325 -6.8428 53 1 1.7009 0.6461 -4.9483 54 1 3.3732 1.0758 -4.5149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184774708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:24 Heat of formation + Delta-G solvation = -183.957227 kcal Electronic energy + Delta-G solvation = -30919.781133 eV Core-core repulsion = 26854.267801 eV Total energy + Delta-G solvation = -4065.513332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68093 -41.01813 -38.83902 -38.27351 -36.88714 -36.41480 -33.38340 -33.15821 -31.69306 -31.37198 -29.50736 -27.56985 -27.45801 -26.91525 -25.04861 -23.53413 -23.03740 -21.59043 -21.41836 -20.69811 -20.59353 -18.69707 -18.24972 -17.79586 -17.66491 -17.21768 -16.97687 -16.53766 -16.40920 -15.59750 -15.22990 -15.06250 -15.01772 -14.87692 -14.77278 -14.65885 -14.13845 -13.70682 -13.63021 -13.47432 -13.43531 -13.20030 -13.13019 -13.10331 -12.99877 -12.85375 -12.77675 -12.63560 -12.32113 -12.25915 -12.15829 -12.07546 -12.03439 -11.70792 -11.56324 -11.55643 -11.37798 -11.26290 -11.14394 -11.03742 -10.74518 -10.62531 -10.40407 -10.07626 -8.06876 -6.23388 1.29120 1.41464 1.43585 1.51170 1.67497 1.84338 2.24217 2.44235 3.17015 3.53758 3.62140 3.71421 3.77277 3.81637 4.14396 4.22221 4.26168 4.26500 4.27430 4.28448 4.38146 4.43968 4.53118 4.56683 4.56922 4.62635 4.65612 4.66440 4.80908 4.88007 4.94206 5.04128 5.05509 5.09745 5.15050 5.19249 5.22070 5.23123 5.23374 5.30252 5.32827 5.37329 5.38105 5.51150 5.56084 5.61649 5.64532 5.72077 6.07264 6.18105 6.36328 6.55464 6.78743 6.87541 7.29483 7.44329 8.93192 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.002673 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.023830 B =10472.479926 C =12134.324357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.059 0.941 4 C -0.113 4.113 5 C 0.444 3.556 6 O -0.541 6.541 7 O -0.353 6.353 8 C 0.101 3.899 9 C 0.062 3.938 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.538 4.538 13 H 0.046 0.954 14 C 0.031 3.969 15 N -0.897 5.897 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.274 1.274 20 N -0.711 5.711 21 C 0.517 3.483 22 O -0.587 6.587 23 C -0.098 4.098 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.097 4.097 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.409 0.591 44 H 0.125 0.875 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.080 0.920 52 H 0.070 0.930 53 H 0.063 0.937 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.123 -1.753 -16.901 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 H 0.077 0.923 4 C -0.150 4.150 5 C 0.288 3.712 6 O -0.431 6.431 7 O -0.269 6.269 8 C 0.028 3.972 9 C 0.061 3.939 10 C -0.175 4.175 11 C -0.175 4.175 12 C -0.576 4.576 13 H 0.064 0.936 14 C -0.169 4.169 15 N -0.535 5.535 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.199 1.199 20 N -0.362 5.362 21 C 0.305 3.695 22 O -0.468 6.468 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.161 4.161 27 C -0.149 4.149 28 C -0.135 4.135 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.245 0.755 44 H 0.142 0.858 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.065 -0.857 -16.973 23.386 hybrid contribution 1.780 0.297 0.356 1.840 sum -14.285 -0.561 -16.617 21.920 Atomic orbital electron populations 1.22075 0.91890 1.03924 1.02973 1.20749 0.95443 0.96317 0.82773 0.92291 1.21907 0.85082 1.06818 1.01191 1.24564 0.93183 0.74844 0.78578 1.90679 1.71594 1.40926 1.39885 1.86506 1.23280 1.70191 1.46941 1.23115 0.74678 0.99376 1.00074 1.18245 0.93155 0.92843 0.89608 1.21604 0.97190 0.98191 1.00528 1.21620 0.97631 0.97665 1.00548 1.21201 0.91844 1.38284 1.06238 0.93605 1.25464 1.01918 0.94268 0.95280 1.69949 1.36750 1.34656 1.12178 0.85731 0.80955 0.77868 0.78029 1.20370 1.20568 1.19901 1.45947 1.66797 1.14249 1.09234 1.21125 0.75982 0.86780 0.85639 1.90646 1.52231 1.17924 1.85952 1.21371 0.98692 0.99735 0.92075 1.21463 0.94092 0.99569 0.99286 1.21527 1.01737 0.98294 0.93580 1.21587 0.97088 0.98745 0.98674 1.21528 0.96718 1.00376 0.96313 1.21307 1.01312 0.96893 0.94036 0.89566 0.93443 0.89759 0.83866 0.83662 0.93517 0.94089 0.94374 0.92137 0.96450 0.96154 0.91964 0.94502 0.92806 0.75540 0.85759 0.94372 0.91311 0.89729 0.91741 0.90338 0.93473 0.90102 0.91164 0.91868 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.15 3.15 2.14 44.99 0.10 3.25 16 3 H 0.06 1.70 7.39 -2.39 -0.02 1.68 16 4 C -0.11 -2.05 5.35 29.85 0.16 -1.89 16 5 C 0.44 13.70 7.82 71.24 0.56 14.26 16 6 O -0.54 -20.53 15.10 21.97 0.33 -20.20 16 7 O -0.35 -12.80 8.77 -51.36 -0.45 -13.25 16 8 C 0.10 4.39 4.26 71.98 0.31 4.70 16 9 C 0.06 2.97 0.58 -52.93 -0.03 2.94 16 10 C -0.12 -5.53 8.06 71.98 0.58 -4.95 16 11 C -0.12 -5.41 8.14 71.98 0.59 -4.83 16 12 C -0.54 -28.82 8.01 25.60 0.20 -28.61 16 13 H 0.05 2.48 7.75 -2.91 -0.02 2.46 16 14 C 0.03 1.65 5.13 84.65 0.43 2.09 16 15 N -0.90 -48.41 9.46 21.45 0.20 -48.20 16 16 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 N -0.71 -14.99 4.11 -442.54 -1.82 -16.81 16 21 C 0.52 13.30 7.12 87.66 0.62 13.92 16 22 O -0.59 -20.17 15.65 -3.03 -0.05 -20.21 16 23 C -0.10 -1.87 2.52 -11.54 -0.03 -1.90 16 24 C -0.11 -2.12 5.10 30.59 0.16 -1.97 16 25 C -0.11 -1.74 5.92 30.60 0.18 -1.56 16 26 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 27 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 28 C -0.10 -1.96 4.49 30.59 0.14 -1.82 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 35 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.04 1.58 7.50 -2.39 -0.02 1.57 16 37 H 0.06 3.09 6.25 -2.39 -0.01 3.07 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 3.17 6.11 -2.39 -0.01 3.15 16 41 H 0.04 1.50 7.68 -2.39 -0.02 1.48 16 42 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 43 H 0.41 6.60 8.02 -92.71 -0.74 5.86 16 44 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.07 1.32 7.56 -2.39 -0.02 1.30 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 52 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 54 H 0.04 1.04 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -69.54 421.10 5.37 -64.18 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.11 Total: 20.88 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.01 Total: -10.96 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -1.62 Total: -65.01 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.17 Total: -53.66 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.54 5.37 -64.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.781 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds