Wall clock time and date at job start Tue Mar 31 2020 22:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00281 * 2 1 4 4 C 1.52995 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47239 * 66.58398 * 4 3 2 6 6 C 1.36938 * 119.99960 * 275.74359 * 5 4 3 7 7 H 1.08002 * 119.99447 * 142.39000 * 6 5 4 8 8 C 1.38806 * 120.00011 * 322.39020 * 6 5 4 9 9 N 1.31624 * 119.99755 * 155.12409 * 8 6 5 10 10 Si 1.86802 * 120.00156 * 335.12598 * 8 6 5 11 11 H 1.48504 * 109.46994 * 95.30878 * 10 8 6 12 12 H 1.48498 * 109.47001 * 215.30714 * 10 8 6 13 13 H 1.48498 * 109.47050 * 335.30642 * 10 8 6 14 14 C 1.46505 * 119.99738 * 95.74728 * 5 4 3 15 15 N 1.46499 * 109.46746 * 269.99649 * 14 5 4 16 16 C 1.33878 * 124.19604 * 89.97964 * 15 14 5 17 17 O 1.21541 * 123.79078 * 359.93297 * 16 15 14 18 18 N 1.34689 * 112.42194 * 179.97438 * 16 15 14 19 19 C 1.46807 * 106.36339 * 0.05121 * 18 16 15 20 20 C 1.50210 * 111.91530 * 238.80518 * 19 18 16 21 21 C 1.54388 * 112.22519 * 332.73443 * 20 19 18 22 22 C 1.54167 * 112.69232 * 318.51605 * 21 20 19 23 23 C 1.50435 * 112.50871 * 318.48416 * 22 21 20 24 24 C 1.54164 * 108.53128 * 94.43420 * 23 22 21 25 25 C 1.45670 * 112.43309 * 279.57618 * 24 23 22 26 26 C 1.34953 * 124.19968 * 269.95178 * 15 14 5 27 27 O 1.21241 * 127.27403 * 0.02562 * 26 15 14 28 28 H 1.09006 * 109.47203 * 59.99850 * 1 2 3 29 29 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47168 * 300.00257 * 1 2 3 31 31 H 1.09008 * 109.46719 * 59.99791 * 3 2 1 32 32 H 1.09001 * 109.46785 * 300.00092 * 3 2 1 33 33 H 1.08997 * 109.47323 * 306.58133 * 4 3 2 34 34 H 1.09005 * 109.46904 * 186.59055 * 4 3 2 35 35 H 0.96999 * 119.99767 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.46841 * 149.99959 * 14 5 4 37 37 H 1.08999 * 109.47422 * 29.99668 * 14 5 4 38 38 H 0.97003 * 126.82068 * 180.02562 * 18 16 15 39 39 H 1.09003 * 108.92879 * 93.43792 * 20 19 18 40 40 H 1.08994 * 108.93088 * 212.02478 * 20 19 18 41 41 H 1.09004 * 108.83393 * 197.69128 * 21 20 19 42 42 H 1.09000 * 108.83926 * 79.34873 * 21 20 19 43 43 H 1.08996 * 108.87260 * 197.70124 * 22 21 20 44 44 H 1.09000 * 108.87599 * 79.26078 * 22 21 20 45 45 H 1.09001 * 109.62596 * 334.71696 * 23 22 21 46 46 H 1.09003 * 109.62667 * 214.14858 * 23 22 21 47 47 H 1.08996 * 108.89000 * 158.81266 * 24 23 22 48 48 H 1.09002 * 108.89145 * 40.33157 * 24 23 22 49 49 H 1.09003 * 108.99495 * 300.97385 * 25 24 23 50 50 H 1.08996 * 109.00500 * 182.20582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9794 0.5986 -1.2665 6 6 3.9884 -0.7614 -1.4260 7 1 3.7129 -1.1955 -2.3758 8 6 4.3516 -1.5820 -0.3670 9 7 3.9177 -2.8237 -0.3178 10 14 5.4560 -0.9241 0.9884 11 1 4.6205 -0.4440 2.1183 12 1 6.3556 -2.0061 1.4627 13 1 6.2697 0.2008 0.4615 14 6 4.4139 1.4677 -2.3630 15 7 3.2628 1.8046 -3.2044 16 6 2.4734 2.8681 -3.0088 17 8 2.6289 3.6687 -2.1077 18 7 1.4870 2.9506 -3.9222 19 6 1.6562 1.8004 -4.8187 20 6 1.8520 2.2260 -6.2458 21 6 1.1895 3.5880 -6.5452 22 6 -0.1997 3.7299 -5.8921 23 6 -1.0178 2.4720 -5.9994 24 6 -0.8206 1.6479 -4.7115 25 6 0.4202 0.8848 -4.7244 26 6 2.8670 1.0818 -4.2730 27 8 3.3756 0.0689 -4.7035 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 3.8489 0.5456 0.8261 34 1 3.9782 2.1737 0.1186 35 1 4.1718 -3.3972 0.4220 36 1 5.1628 0.9498 -2.9622 37 1 4.8445 2.3815 -1.9536 38 1 0.8008 3.6340 -3.9766 39 1 2.9203 2.3001 -6.4493 40 1 1.4202 1.4707 -6.9025 41 1 1.0840 3.6983 -7.6245 42 1 1.8360 4.3831 -6.1737 43 1 -0.7373 4.5429 -6.3801 44 1 -0.0705 3.9776 -4.8385 45 1 -0.6855 1.8915 -6.8601 46 1 -2.0711 2.7288 -6.1121 47 1 -1.6577 0.9586 -4.6020 48 1 -0.8094 2.3251 -3.8574 49 1 0.4126 0.2097 -5.5801 50 1 0.4840 0.2955 -3.8097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840155152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:33 Heat of formation + Delta-G solvation = -38.878558 kcal Electronic energy + Delta-G solvation = -33551.670297 eV Core-core repulsion = 29388.907705 eV Total energy + Delta-G solvation = -4162.762592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40431 -38.79848 -38.00270 -37.23236 -35.60086 -35.16117 -33.14198 -32.79440 -31.46303 -31.10152 -29.04017 -26.45719 -25.64597 -25.16204 -24.89261 -23.02256 -22.60014 -21.48859 -20.46952 -20.11018 -19.59715 -17.45714 -16.82688 -16.48706 -16.14694 -15.84369 -15.58048 -15.32462 -15.07568 -15.02549 -14.78224 -14.54999 -14.38572 -14.10041 -13.78408 -13.75769 -13.51324 -13.17425 -12.84883 -12.82005 -12.43219 -12.24574 -11.98741 -11.83082 -11.47194 -11.28018 -11.16009 -11.06381 -10.90535 -10.89660 -10.72213 -10.64484 -10.51753 -10.38768 -10.31549 -9.75513 -9.62042 -9.49054 -9.29915 -9.10642 -8.78145 -8.39561 -7.07082 -5.91106 -3.33904 2.17222 2.79767 3.38200 3.46549 3.52139 3.54994 3.58732 4.24525 4.35429 4.39039 4.59878 4.63387 4.65979 4.83028 4.91240 4.95713 5.02078 5.06694 5.13442 5.41016 5.46279 5.57815 5.59694 5.67313 5.68428 5.76692 5.82932 5.85006 5.89369 5.92337 5.93997 6.00754 6.04296 6.07158 6.08976 6.15746 6.16854 6.19168 6.19855 6.30066 6.38164 6.52529 6.80354 7.09201 7.64397 7.97162 8.00264 8.13428 8.44231 8.61490 8.98875 9.76889 10.04584 11.23680 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.004597 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.924249 B = 6088.839014 C = 6344.075427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.573 5.573 6 C -0.273 4.273 7 H 0.084 0.916 8 C 0.059 3.941 9 N -0.881 5.881 10 Si 0.867 3.133 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.270 1.270 14 C 0.347 3.653 15 N -0.579 5.579 16 C 0.697 3.303 17 O -0.558 6.558 18 N -0.728 5.728 19 C 0.125 3.875 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.112 4.112 26 C 0.534 3.466 27 O -0.458 6.458 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.430 0.570 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 13.350 -11.343 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C -0.027 4.027 4 C 0.005 3.995 5 N -0.293 5.293 6 C -0.400 4.400 7 H 0.102 0.898 8 C -0.143 4.143 9 N -0.520 5.520 10 Si 0.697 3.303 11 H -0.213 1.213 12 H -0.229 1.229 13 H -0.195 1.195 14 C 0.140 3.860 15 N -0.331 5.331 16 C 0.399 3.601 17 O -0.433 6.433 18 N -0.402 5.402 19 C 0.033 3.967 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.150 4.150 26 C 0.319 3.681 27 O -0.326 6.326 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.112 12.786 -10.880 19.102 hybrid contribution -0.192 0.761 0.982 1.257 sum -9.304 13.547 -9.898 19.185 Atomic orbital electron populations 1.22591 0.84066 1.01639 0.97989 1.88323 1.16684 1.26469 1.94783 1.23171 0.96718 0.84831 0.98007 1.21456 0.90946 0.97090 0.90023 1.44672 1.70938 1.04003 1.09668 1.18665 1.42150 0.78547 1.00674 0.89840 1.25214 0.97207 0.94768 0.97104 1.69928 1.42497 1.07855 1.31751 0.87102 0.82052 0.78294 0.82815 1.21309 1.22876 1.19496 1.21223 0.83345 0.94725 0.86698 1.48814 1.30824 1.24258 1.29207 1.16439 0.79882 0.81784 0.82010 1.90923 1.74191 1.44483 1.33740 1.46728 1.32830 1.29508 1.31098 1.20887 0.96278 0.87413 0.92108 1.21453 1.01973 0.98431 0.93004 1.21884 0.95649 0.96574 1.00757 1.21644 0.95885 0.98509 1.00284 1.21380 0.99660 0.96337 0.98377 1.20481 0.97491 0.99649 0.97967 1.20668 0.92376 0.97517 1.04454 1.20465 0.83771 0.83492 0.80359 1.90790 1.58938 1.20602 1.62241 0.95693 0.90383 0.95724 0.95634 0.94082 0.92047 0.91926 0.92878 0.88572 0.90367 0.71666 0.91094 0.89785 0.91408 0.91748 0.91674 0.92021 0.91051 0.91649 0.91347 0.91918 0.90031 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 101.05 1.11 1.74 16 2 O -0.35 -8.15 9.97 -35.23 -0.35 -8.50 16 3 C 0.05 1.11 6.27 37.16 0.23 1.35 16 4 C 0.13 2.96 5.21 -4.05 -0.02 2.93 16 5 N -0.57 -13.64 2.32 -176.95 -0.41 -14.05 16 6 C -0.27 -7.62 9.15 -15.06 -0.14 -7.75 16 7 H 0.08 2.62 7.85 -52.49 -0.41 2.21 16 8 C 0.06 1.72 5.29 -17.43 -0.09 1.62 16 9 N -0.88 -27.10 13.97 55.49 0.78 -26.32 16 10 Si 0.87 22.23 25.23 -169.99 -4.29 17.94 16 11 H -0.29 -7.24 6.64 56.52 0.38 -6.87 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.35 7.05 6.27 -63.75 -0.40 6.65 16 15 N -0.58 -10.72 2.85 -124.34 -0.35 -11.08 16 16 C 0.70 11.96 7.23 -87.80 -0.63 11.32 16 17 O -0.56 -10.82 16.64 5.33 0.09 -10.73 16 18 N -0.73 -9.50 4.20 -54.22 -0.23 -9.72 16 19 C 0.12 1.63 0.85 -133.47 -0.11 1.51 16 20 C -0.11 -1.11 4.94 -27.39 -0.14 -1.25 16 21 C -0.11 -0.86 5.40 -25.39 -0.14 -1.00 16 22 C -0.13 -0.88 5.28 -27.40 -0.14 -1.03 16 23 C -0.12 -0.87 5.60 -27.40 -0.15 -1.02 16 24 C -0.12 -1.11 5.18 -29.58 -0.15 -1.27 16 25 C -0.11 -1.37 4.61 -29.62 -0.14 -1.51 16 26 C 0.53 9.56 6.64 -10.76 -0.07 9.49 16 27 O -0.46 -9.65 17.56 5.59 0.10 -9.55 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 33 H 0.06 1.52 3.24 -51.93 -0.17 1.36 16 34 H 0.06 1.28 7.83 -51.93 -0.41 0.88 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.10 1.95 7.91 -51.93 -0.41 1.54 16 37 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 38 H 0.43 4.67 4.50 -40.82 -0.18 4.49 16 39 H 0.07 0.77 7.77 -51.93 -0.40 0.37 16 40 H 0.08 0.77 6.69 -51.93 -0.35 0.42 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.48 3.94 -51.93 -0.20 0.27 16 45 H 0.07 0.51 6.95 -51.93 -0.36 0.15 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.63 6.48 -51.93 -0.34 0.29 16 49 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 50 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -33.95 375.94 -7.68 -41.62 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.69 Total: 2.92 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: -0.98 Total: 21.81 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.22 Total: -61.18 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.16 Total: -28.78 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.29 Total: 17.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.95 -7.68 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840155152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.746 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds