Wall clock time and date at job start Tue Mar 31 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00281 * 2 1 4 4 C 1.52995 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47239 * 66.58398 * 4 3 2 6 6 C 1.36938 * 119.99960 * 275.74359 * 5 4 3 7 7 H 1.08002 * 119.99447 * 142.39000 * 6 5 4 8 8 C 1.38806 * 120.00011 * 322.39020 * 6 5 4 9 9 N 1.31624 * 119.99755 * 155.12409 * 8 6 5 10 10 Si 1.86802 * 120.00156 * 335.12598 * 8 6 5 11 11 H 1.48504 * 109.46994 * 95.30878 * 10 8 6 12 12 H 1.48498 * 109.47001 * 215.30714 * 10 8 6 13 13 H 1.48498 * 109.47050 * 335.30642 * 10 8 6 14 14 C 1.46505 * 119.99738 * 95.74728 * 5 4 3 15 15 N 1.46499 * 109.46746 * 269.99649 * 14 5 4 16 16 C 1.33878 * 124.19604 * 89.97964 * 15 14 5 17 17 O 1.21541 * 123.79078 * 359.93297 * 16 15 14 18 18 N 1.34689 * 112.42194 * 179.97438 * 16 15 14 19 19 C 1.46807 * 106.36339 * 0.05121 * 18 16 15 20 20 C 1.50210 * 111.91530 * 238.80518 * 19 18 16 21 21 C 1.54388 * 112.22519 * 332.73443 * 20 19 18 22 22 C 1.54167 * 112.69232 * 318.51605 * 21 20 19 23 23 C 1.50435 * 112.50871 * 318.48416 * 22 21 20 24 24 C 1.54164 * 108.53128 * 94.43420 * 23 22 21 25 25 C 1.45670 * 112.43309 * 279.57618 * 24 23 22 26 26 C 1.34953 * 124.19968 * 269.95178 * 15 14 5 27 27 O 1.21241 * 127.27403 * 0.02562 * 26 15 14 28 28 H 1.09006 * 109.47203 * 59.99850 * 1 2 3 29 29 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47168 * 300.00257 * 1 2 3 31 31 H 1.09008 * 109.46719 * 59.99791 * 3 2 1 32 32 H 1.09001 * 109.46785 * 300.00092 * 3 2 1 33 33 H 1.08997 * 109.47323 * 306.58133 * 4 3 2 34 34 H 1.09005 * 109.46904 * 186.59055 * 4 3 2 35 35 H 0.96999 * 119.99767 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.46841 * 149.99959 * 14 5 4 37 37 H 1.08999 * 109.47422 * 29.99668 * 14 5 4 38 38 H 0.97003 * 126.82068 * 180.02562 * 18 16 15 39 39 H 1.09003 * 108.92879 * 93.43792 * 20 19 18 40 40 H 1.08994 * 108.93088 * 212.02478 * 20 19 18 41 41 H 1.09004 * 108.83393 * 197.69128 * 21 20 19 42 42 H 1.09000 * 108.83926 * 79.34873 * 21 20 19 43 43 H 1.08996 * 108.87260 * 197.70124 * 22 21 20 44 44 H 1.09000 * 108.87599 * 79.26078 * 22 21 20 45 45 H 1.09001 * 109.62596 * 334.71696 * 23 22 21 46 46 H 1.09003 * 109.62667 * 214.14858 * 23 22 21 47 47 H 1.08996 * 108.89000 * 158.81266 * 24 23 22 48 48 H 1.09002 * 108.89145 * 40.33157 * 24 23 22 49 49 H 1.09003 * 108.99495 * 300.97385 * 25 24 23 50 50 H 1.08996 * 109.00500 * 182.20582 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9794 0.5986 -1.2665 6 6 3.9884 -0.7614 -1.4260 7 1 3.7129 -1.1955 -2.3758 8 6 4.3516 -1.5820 -0.3670 9 7 3.9177 -2.8237 -0.3178 10 14 5.4560 -0.9241 0.9884 11 1 4.6205 -0.4440 2.1183 12 1 6.3556 -2.0061 1.4627 13 1 6.2697 0.2008 0.4615 14 6 4.4139 1.4677 -2.3630 15 7 3.2628 1.8046 -3.2044 16 6 2.4734 2.8681 -3.0088 17 8 2.6289 3.6687 -2.1077 18 7 1.4870 2.9506 -3.9222 19 6 1.6562 1.8004 -4.8187 20 6 1.8520 2.2260 -6.2458 21 6 1.1895 3.5880 -6.5452 22 6 -0.1997 3.7299 -5.8921 23 6 -1.0178 2.4720 -5.9994 24 6 -0.8206 1.6479 -4.7115 25 6 0.4202 0.8848 -4.7244 26 6 2.8670 1.0818 -4.2730 27 8 3.3756 0.0689 -4.7035 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 3.8489 0.5456 0.8261 34 1 3.9782 2.1737 0.1186 35 1 4.1718 -3.3972 0.4220 36 1 5.1628 0.9498 -2.9622 37 1 4.8445 2.3815 -1.9536 38 1 0.8008 3.6340 -3.9766 39 1 2.9203 2.3001 -6.4493 40 1 1.4202 1.4707 -6.9025 41 1 1.0840 3.6983 -7.6245 42 1 1.8360 4.3831 -6.1737 43 1 -0.7373 4.5429 -6.3801 44 1 -0.0705 3.9776 -4.8385 45 1 -0.6855 1.8915 -6.8601 46 1 -2.0711 2.7288 -6.1121 47 1 -1.6577 0.9586 -4.6020 48 1 -0.8094 2.3251 -3.8574 49 1 0.4126 0.2097 -5.5801 50 1 0.4840 0.2955 -3.8097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840155152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:31 Heat of formation + Delta-G solvation = -62.682801 kcal Electronic energy + Delta-G solvation = -33552.702527 eV Core-core repulsion = 29388.907705 eV Total energy + Delta-G solvation = -4163.794821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.71034 -39.93320 -39.48630 -38.90470 -37.34234 -36.55406 -34.56995 -33.59119 -33.45515 -32.13989 -30.75145 -28.13465 -27.24040 -26.28609 -25.72442 -24.79931 -23.89232 -23.14398 -21.70855 -21.28665 -20.62104 -18.86951 -18.68466 -18.05365 -17.47898 -17.24863 -17.19773 -16.71096 -16.55988 -16.43050 -16.11223 -15.96074 -15.66488 -15.31837 -15.25013 -14.98458 -14.77444 -14.75113 -14.33125 -14.11358 -13.77498 -13.65259 -13.21513 -13.14833 -13.05716 -12.76094 -12.71800 -12.39745 -12.24758 -12.06105 -11.92589 -11.80041 -11.77361 -11.56241 -11.52627 -11.36885 -11.23744 -10.94362 -10.80132 -10.54404 -10.44657 -10.28340 -9.06616 -8.13228 -5.54411 0.74201 1.32276 1.39531 1.48145 1.52817 2.09437 2.26224 2.47474 2.97407 3.05582 3.07371 3.38303 3.40658 3.55019 3.93067 4.05057 4.09511 4.14172 4.23299 4.27162 4.29985 4.32516 4.37667 4.41613 4.46023 4.47339 4.50705 4.60311 4.63836 4.74678 4.77085 4.85453 4.89757 4.91165 4.98599 5.05722 5.09189 5.17116 5.23214 5.29171 5.33541 5.43030 5.52932 5.90926 5.94537 6.21833 6.26798 6.48710 6.57379 6.90058 7.24628 7.60421 7.94937 9.06146 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.004597 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.924249 B = 6088.839014 C = 6344.075427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.056 3.944 4 C 0.127 3.873 5 N -0.586 5.586 6 C -0.249 4.249 7 H 0.033 0.967 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.932 3.068 11 H -0.280 1.280 12 H -0.308 1.308 13 H -0.252 1.252 14 C 0.350 3.650 15 N -0.588 5.588 16 C 0.696 3.304 17 O -0.577 6.577 18 N -0.703 5.703 19 C 0.138 3.862 20 C -0.109 4.109 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.105 4.105 26 C 0.522 3.478 27 O -0.499 6.499 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.444 0.556 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 16.614 -12.308 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.022 4.022 4 C 0.002 3.998 5 N -0.307 5.307 6 C -0.378 4.378 7 H 0.051 0.949 8 C -0.192 4.192 9 N -0.576 5.576 10 Si 0.761 3.239 11 H -0.207 1.207 12 H -0.236 1.236 13 H -0.176 1.176 14 C 0.143 3.857 15 N -0.338 5.338 16 C 0.397 3.603 17 O -0.454 6.454 18 N -0.378 5.378 19 C 0.047 3.953 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.143 4.143 26 C 0.309 3.691 27 O -0.370 6.370 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.302 0.698 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.760 16.138 -11.889 22.751 hybrid contribution 0.211 -0.229 1.153 1.194 sum -10.550 15.909 -10.736 21.901 Atomic orbital electron populations 1.22738 0.81636 1.02330 0.99734 1.88252 1.19602 1.27939 1.95125 1.23109 0.95875 0.84307 0.98952 1.21525 0.92114 0.97655 0.88505 1.44608 1.72308 1.02730 1.11101 1.18254 1.40402 0.80642 0.98513 0.94889 1.25771 0.98605 0.94937 0.99844 1.70057 1.44745 1.09574 1.33181 0.86055 0.80007 0.77765 0.80092 1.20730 1.23620 1.17618 1.21246 0.83722 0.94938 0.85801 1.48403 1.30982 1.25089 1.29309 1.16414 0.80380 0.81075 0.82436 1.90907 1.74858 1.44944 1.34703 1.46681 1.31814 1.29511 1.29746 1.20911 0.93988 0.86861 0.93588 1.21519 1.02120 1.00666 0.90449 1.21892 0.95767 0.94341 1.02355 1.21649 0.95556 0.99195 0.99726 1.21364 1.00975 0.95900 0.96871 1.20484 0.95784 0.99734 0.99447 1.20668 0.93388 0.97499 1.02769 1.21278 0.84808 0.83014 0.79963 1.90762 1.60559 1.22399 1.63309 0.94591 0.90375 0.93093 0.93283 0.94225 0.93990 0.89335 0.93139 0.89501 0.88025 0.69848 0.91938 0.88349 0.89131 0.91993 0.89326 0.92877 0.90357 0.89757 0.90619 0.92397 0.89090 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 11.01 113.37 1.25 2.41 16 2 O -0.39 -18.57 9.97 -148.98 -1.49 -20.06 16 3 C 0.06 2.36 6.27 71.98 0.45 2.81 16 4 C 0.13 5.65 5.21 86.38 0.45 6.10 16 5 N -0.59 -28.23 2.32 -713.75 -1.65 -29.88 16 6 C -0.25 -14.50 9.15 84.03 0.77 -13.73 16 7 H 0.03 2.23 7.85 -2.91 -0.02 2.21 16 8 C 0.01 0.38 5.29 84.86 0.45 0.83 16 9 N -0.93 -60.02 13.97 21.65 0.30 -59.72 16 10 Si 0.93 46.98 25.23 68.60 1.73 48.71 16 11 H -0.28 -13.74 6.64 99.48 0.66 -13.08 16 12 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 13 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.35 14.34 6.27 170.96 1.07 15.41 16 15 N -0.59 -21.93 2.85 -784.37 -2.24 -24.16 16 16 C 0.70 23.16 7.23 179.36 1.30 24.45 16 17 O -0.58 -21.40 16.64 -3.85 -0.06 -21.47 16 18 N -0.70 -17.18 4.20 -443.77 -1.86 -19.05 16 19 C 0.14 3.47 0.85 2.37 0.00 3.47 16 20 C -0.11 -1.98 4.94 30.17 0.15 -1.83 16 21 C -0.11 -1.24 5.40 31.46 0.17 -1.07 16 22 C -0.12 -1.22 5.28 30.16 0.16 -1.06 16 23 C -0.11 -1.19 5.60 30.16 0.17 -1.02 16 24 C -0.12 -1.94 5.18 28.75 0.15 -1.79 16 25 C -0.10 -2.50 4.61 28.73 0.13 -2.37 16 26 C 0.52 19.21 6.64 87.72 0.58 19.79 16 27 O -0.50 -22.25 17.56 -2.91 -0.05 -22.30 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.66 5.64 -2.39 -0.01 1.64 16 33 H 0.04 2.05 3.24 -2.39 -0.01 2.04 16 34 H 0.09 3.43 7.83 -2.38 -0.02 3.42 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.09 3.66 7.91 -2.38 -0.02 3.64 16 37 H 0.10 3.66 7.58 -2.39 -0.02 3.65 16 38 H 0.44 8.48 4.50 -92.71 -0.42 8.06 16 39 H 0.06 1.27 7.77 -2.39 -0.02 1.26 16 40 H 0.10 1.54 6.69 -2.39 -0.02 1.52 16 41 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.05 0.62 3.94 -2.39 -0.01 0.61 16 45 H 0.08 0.77 6.95 -2.39 -0.02 0.76 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.06 1.02 6.48 -2.39 -0.02 1.01 16 49 H 0.09 2.00 7.53 -2.39 -0.02 1.98 16 50 H 0.03 1.09 7.93 -2.39 -0.02 1.07 16 Total: -1.00 -78.13 375.94 2.43 -75.70 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.50 Total: 19.82 kcal Atomic # 6 Polarization: 45.15 SS G_CDS: 7.25 Total: 52.40 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.45 Total: -132.81 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -1.60 Total: -63.83 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.73 Total: 48.71 kcal Total: -78.13 2.43 -75.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840155152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.021 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds