Wall clock time and date at job start Tue Mar 31 2020 23:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00089 * 2 1 4 4 C 1.53000 * 109.47456 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47635 * 180.23979 * 4 3 2 6 6 C 1.36743 * 127.13517 * 269.01044 * 5 4 3 7 7 C 1.50697 * 126.34468 * 0.03230 * 6 5 4 8 8 O 1.42905 * 109.47030 * 270.24684 * 7 6 5 9 9 C 1.42899 * 113.99888 * 180.02562 * 8 7 6 10 10 N 1.30299 * 107.30179 * 180.22582 * 6 5 4 11 11 N 1.28524 * 110.05663 * 359.76827 * 10 6 5 12 12 C 1.31218 * 109.85984 * 0.02562 * 11 10 6 13 13 N 1.38579 * 126.47406 * 179.97438 * 12 11 10 14 14 C 1.46957 * 110.99808 * 298.07282 * 13 12 11 15 15 C 1.53058 * 109.36382 * 183.18933 * 14 13 12 16 16 N 1.46960 * 109.36279 * 301.59508 * 15 14 13 17 17 C 1.46897 * 110.99893 * 183.18766 * 16 15 14 18 18 C 1.50697 * 109.46814 * 170.00188 * 17 16 15 19 19 H 1.08001 * 120.00622 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99950 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99894 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47216 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46976 * 119.99949 * 22 20 18 25 25 H 1.48502 * 109.46948 * 239.99654 * 22 20 18 26 26 C 1.46961 * 110.87712 * 59.32019 * 16 15 14 27 27 C 1.46960 * 110.99995 * 61.86862 * 13 12 11 28 28 H 1.08999 * 109.47632 * 59.99140 * 1 2 3 29 29 H 1.09002 * 109.47630 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46798 * 299.99304 * 1 2 3 31 31 H 1.09001 * 109.47173 * 60.00253 * 3 2 1 32 32 H 1.08997 * 109.47580 * 300.00481 * 3 2 1 33 33 H 1.09000 * 109.47381 * 60.23613 * 4 3 2 34 34 H 1.09004 * 109.47140 * 300.24019 * 4 3 2 35 35 H 1.08995 * 109.47715 * 30.25724 * 7 6 5 36 36 H 1.09004 * 109.46522 * 150.25403 * 7 6 5 37 37 H 1.08997 * 109.47387 * 60.00440 * 9 8 7 38 38 H 1.08997 * 109.47062 * 180.02562 * 9 8 7 39 39 H 1.08998 * 109.47228 * 300.00350 * 9 8 7 40 40 H 1.09001 * 109.48935 * 63.22155 * 14 13 12 41 41 H 1.09000 * 109.48988 * 303.15212 * 14 13 12 42 42 H 1.08997 * 109.48682 * 181.63534 * 15 14 13 43 43 H 1.08998 * 109.49073 * 61.56432 * 15 14 13 44 44 H 1.08993 * 109.47369 * 290.00273 * 17 16 15 45 45 H 1.09000 * 109.46891 * 50.00243 * 17 16 15 46 46 H 0.96999 * 120.00248 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.48426 * 60.64987 * 26 16 15 48 48 H 1.09003 * 109.48571 * 180.70842 * 26 16 15 49 49 H 1.08998 * 109.49054 * 296.78170 * 27 13 12 50 50 H 1.09000 * 109.48229 * 56.82660 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5229 0.0051 6 6 4.4843 3.2741 -1.0816 7 6 4.3320 2.8791 -2.5279 8 8 5.5120 2.2005 -2.9631 9 6 5.4711 1.7813 -4.3286 10 7 4.9804 4.3930 -0.6347 11 7 4.9606 4.4018 0.6504 12 6 4.4470 3.2795 1.0960 13 7 4.2644 2.9270 2.4237 14 6 5.5499 2.8613 3.1327 15 6 5.3131 2.3930 4.5705 16 7 4.3924 3.3223 5.2403 17 6 4.1988 2.9487 6.6477 18 6 3.4552 4.0480 7.3614 19 1 3.1559 4.9353 6.8233 20 6 3.1568 3.9211 8.7016 21 7 3.5208 2.8404 9.3568 22 14 2.2345 5.2835 9.5862 23 1 1.9413 6.3831 8.6323 24 1 0.9612 4.7468 10.1303 25 1 3.0682 5.8037 10.6996 26 6 3.1069 3.3881 4.5311 27 6 3.3437 3.8563 3.0934 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8570 0.6476 -0.8930 34 1 3.8572 0.6399 0.8870 35 1 3.4721 2.2181 -2.6355 36 1 4.1819 3.7722 -3.1345 37 1 5.3448 2.6517 -4.9723 38 1 6.4024 1.2743 -4.5810 39 1 4.6348 1.0975 -4.4738 40 1 6.0103 3.8492 3.1432 41 1 6.2096 2.1576 2.6251 42 1 6.2617 2.3714 5.1068 43 1 4.8777 1.3938 4.5605 44 1 3.6225 2.0252 6.7025 45 1 5.1694 2.7999 7.1209 46 1 3.3112 2.7513 10.2997 47 1 2.6465 2.4001 4.5207 48 1 2.4472 4.0917 5.0388 49 1 3.7791 4.8555 3.1034 50 1 2.3952 3.8783 2.5568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871082521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:55 Heat of formation + Delta-G solvation = 19.771599 kcal Electronic energy + Delta-G solvation = -30562.191993 eV Core-core repulsion = 26434.265413 eV Total energy + Delta-G solvation = -4127.926579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.17741 -38.91897 -38.45596 -38.23217 -35.50242 -35.15867 -32.57543 -31.23466 -30.63323 -30.19888 -28.38681 -27.28490 -26.72901 -25.90725 -25.07098 -23.86646 -23.22142 -22.10668 -21.26830 -20.88789 -19.21371 -17.82685 -17.20055 -16.90398 -16.60939 -16.40041 -16.30917 -16.05809 -15.92277 -15.62399 -15.17050 -14.75961 -14.42814 -14.27895 -14.07226 -13.90623 -13.60724 -13.39926 -13.00458 -12.93994 -12.76149 -12.18063 -12.03674 -11.97363 -11.89471 -11.78503 -11.63126 -11.32645 -11.00141 -10.88136 -10.80944 -10.71113 -10.52774 -10.43472 -10.37052 -10.24616 -10.14418 -9.81928 -9.21869 -9.17993 -8.74367 -8.45184 -7.30361 -6.04590 -4.06006 1.37239 1.87418 2.58327 3.26666 3.30227 3.38016 3.41718 3.42834 3.80871 4.16102 4.22757 4.40681 4.40907 4.48473 4.74124 4.76175 4.82871 4.88074 4.89399 4.92938 4.93536 5.00041 5.11139 5.24301 5.27355 5.30940 5.31236 5.34773 5.40199 5.51901 5.56019 5.72838 5.77738 5.83200 5.93706 6.04991 6.30066 6.35081 6.51509 6.55669 6.56369 6.61952 6.81002 7.21101 7.25702 7.30764 7.77167 8.03844 8.14479 8.50170 8.57878 9.01744 9.58493 11.06262 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.002619 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.646932 B =10690.524015 C =11672.042924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.051 3.949 4 C 0.115 3.885 5 N -0.456 5.456 6 C 0.168 3.832 7 C 0.155 3.845 8 O -0.384 6.384 9 C 0.032 3.968 10 N -0.262 5.262 11 N -0.304 5.304 12 C 0.369 3.631 13 N -0.469 5.469 14 C 0.072 3.928 15 C 0.058 3.942 16 N -0.537 5.537 17 C 0.194 3.806 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.070 3.930 27 C 0.070 3.930 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.033 0.967 44 H -0.007 1.007 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.031 0.969 48 H 0.095 0.905 49 H 0.062 0.938 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 -6.636 -26.658 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.027 4.027 4 C -0.009 4.009 5 N -0.150 5.150 6 C -0.099 4.099 7 C 0.076 3.924 8 O -0.302 6.302 9 C -0.065 4.065 10 N -0.105 5.105 11 N -0.148 5.148 12 C 0.013 3.987 13 N -0.196 5.196 14 C -0.055 4.055 15 C -0.071 4.071 16 N -0.262 5.262 17 C 0.069 3.931 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.059 4.059 27 C -0.057 4.057 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.051 0.949 44 H 0.011 0.989 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.380 -5.587 -26.348 27.038 hybrid contribution -1.547 -0.571 0.450 1.709 sum -3.927 -6.158 -25.898 26.908 Atomic orbital electron populations 1.22800 0.79900 1.03229 1.00398 1.87802 1.20565 1.26413 1.95542 1.22704 0.92658 0.85809 1.01512 1.21561 0.92270 0.80411 1.06639 1.46188 1.46795 1.15860 1.06202 1.24187 1.04431 0.90603 0.90679 1.20469 0.88394 0.97647 0.85872 1.87990 1.37918 1.76252 1.28028 1.22812 1.02814 0.99036 0.81804 1.74040 1.15776 1.17302 1.03355 1.74771 1.19316 1.17733 1.02994 1.22607 0.99211 0.88055 0.88849 1.59076 1.15021 1.50519 0.95008 1.22287 0.87286 1.01854 0.94029 1.22094 0.98512 0.94594 0.91881 1.62301 1.10432 1.48695 1.04810 1.19715 0.96983 0.95290 0.81097 1.21187 1.35461 1.03754 0.94206 0.91782 1.24991 0.96209 0.95883 0.97529 1.69964 1.47157 1.27092 1.09536 0.86451 0.79357 0.82022 0.79661 1.19632 1.21153 1.21001 1.22020 0.93037 1.00403 0.90464 1.22370 0.94161 0.94225 0.94913 0.93968 0.89078 0.93448 0.91798 0.93004 0.87930 0.86746 0.91334 0.89279 0.93437 0.89063 0.93728 0.91931 0.90988 0.90105 0.94878 0.98944 0.95011 0.92963 0.95095 0.88732 0.91943 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.66 10.70 -35.23 -0.38 -4.03 16 3 C 0.05 0.46 6.26 37.16 0.23 0.69 16 4 C 0.11 1.11 6.27 -4.04 -0.03 1.08 16 5 N -0.46 -5.69 2.81 -114.09 -0.32 -6.01 16 6 C 0.17 2.13 7.70 -154.01 -1.19 0.95 16 7 C 0.16 1.33 6.13 36.00 0.22 1.55 16 8 O -0.38 -3.70 10.69 -35.23 -0.38 -4.08 16 9 C 0.03 0.17 11.01 101.05 1.11 1.29 16 10 N -0.26 -4.22 12.18 32.99 0.40 -3.82 16 11 N -0.30 -5.27 12.19 30.31 0.37 -4.90 16 12 C 0.37 5.61 6.45 -318.88 -2.06 3.55 16 13 N -0.47 -7.22 4.73 -174.35 -0.82 -8.04 16 14 C 0.07 1.15 5.53 -3.76 -0.02 1.13 16 15 C 0.06 1.04 5.61 -3.76 -0.02 1.02 16 16 N -0.54 -11.36 4.70 -235.91 -1.11 -12.47 16 17 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 18 C -0.51 -13.99 8.47 -34.44 -0.29 -14.28 16 19 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.07 1.31 5.43 -3.77 -0.02 1.29 16 27 C 0.07 1.13 5.53 -3.77 -0.02 1.11 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.82 7.83 -51.93 -0.41 0.42 16 34 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 42 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 45 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -33.42 410.13 -10.12 -43.54 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.70 Total: -4.25 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.09 Total: 7.10 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.75 Total: -60.89 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.75 Total: -8.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.42 -10.12 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871082521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.316 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds